RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP7.34□□□□□ -1.24
HERC4-209ENST00000473533 MAP3K5Q99683 1374 aa7.34□□□□□ -1.24
HERC4-209ENST00000473533 PTPRUQ92729 1446 aa7.33□□□□□ -1.24
HERC4-209ENST00000473533 STX6O43752 255 aa7.33□□□□□ -1.24
HERC4-209ENST00000473533 CCDC192P0DO97 292 aa7.33□□□□□ -1.24
HERC4-209ENST00000473533 FAM208AQ9UK61 1670 aaKnown RBP7.33□□□□□ -1.24
HERC4-209ENST00000473533 CCDC171Q6TFL3 1326 aa7.33□□□□□ -1.24
HERC4-209ENST00000473533 GLRX3O76003 335 aaKnown RBP7.33□□□□□ -1.24
HERC4-209ENST00000473533 NOLC1Q14978 699 aaKnown RBP eCLIP7.33□□□□□ -1.24
HERC4-209ENST00000473533 ANKRD1Q15327 319 aa7.33□□□□□ -1.24
HERC4-209ENST00000473533 RNF214Q8ND24 703 aa7.33□□□□□ -1.24
HERC4-209ENST00000473533 SSH3Q8TE77 659 aa7.33□□□□□ -1.24
HERC4-209ENST00000473533 EXOC6BQ9Y2D4 811 aa7.33□□□□□ -1.24
HERC4-209ENST00000473533 KIF3AQ9Y496 699 aa7.33□□□□□ -1.24
HERC4-209ENST00000473533 LRRC37A3O60309 1634 aa7.33□□□□□ -1.24
HERC4-209ENST00000473533 ZKSCAN1P17029 563 aaPredicted RBP7.33□□□□□ -1.24
HERC4-209ENST00000473533 PSMA5P28066 241 aa7.33□□□□□ -1.24
HERC4-209ENST00000473533 SPTLC3Q9NUV7 552 aa7.33□□□□□ -1.24
HERC4-209ENST00000473533 GNAT3A8MTJ3 354 aa7.32□□□□□ -1.24
HERC4-209ENST00000473533 SGSM2O43147 1006 aa7.32□□□□□ -1.24
HERC4-209ENST00000473533 KDM4AO75164 1064 aa7.32□□□□□ -1.24
HERC4-209ENST00000473533 F13A1P00488 732 aa7.32□□□□□ -1.24
HERC4-209ENST00000473533 UTP14CQ5TAP6 766 aaKnown RBP7.32□□□□□ -1.24
HERC4-209ENST00000473533 TXNDC2Q86VQ3 553 aa7.32□□□□□ -1.24
HERC4-209ENST00000473533 CHMP4CQ96CF2 233 aa7.32□□□□□ -1.24
HERC4-209ENST00000473533 RPAP1Q9BWH6 1393 aaPredicted RBP7.32□□□□□ -1.24
HERC4-209ENST00000473533 ADCY5O95622 1261 aa7.32□□□□□ -1.24
HERC4-209ENST00000473533 RBM10P98175 930 aaKnown RBP7.32□□□□□ -1.24
HERC4-209ENST00000473533 VPS53Q5VIR6 699 aa7.32□□□□□ -1.24
HERC4-209ENST00000473533 XRN1Q8IZH2 1706 aaKnown RBP7.32□□□□□ -1.24
HERC4-209ENST00000473533 ACEP12821 1306 aa7.32□□□□□ -1.24
HERC4-209ENST00000473533 IGSF1Q8N6C5 1336 aa7.32□□□□□ -1.24
HERC4-209ENST00000473533 USP42Q9H9J4 1324 aaKnown RBP7.32□□□□□ -1.24
HERC4-209ENST00000473533 AMPHP49418 695 aa7.31□□□□□ -1.24
HERC4-209ENST00000473533 RNF20Q5VTR2 975 aa7.31□□□□□ -1.24
HERC4-209ENST00000473533 PDCL2Q8N4E4 241 aa7.31□□□□□ -1.24
HERC4-209ENST00000473533 CYP46A1Q9Y6A2 500 aa7.31□□□□□ -1.24
HERC4-209ENST00000473533 METP08581 1390 aa7.31□□□□□ -1.24
HERC4-209ENST00000473533 FBLN1P23142 703 aa7.31□□□□□ -1.24
HERC4-209ENST00000473533 KRT85P78386 507 aa7.31□□□□□ -1.24
HERC4-209ENST00000473533 DHX8Q14562 1220 aaKnown RBP7.31□□□□□ -1.24
HERC4-209ENST00000473533 SYCP1Q15431 976 aa7.31□□□□□ -1.24
HERC4-209ENST00000473533 FOXD4L5Q5VV16 416 aaPredicted RBP7.31□□□□□ -1.24
HERC4-209ENST00000473533 FOXD4L4Q8WXT5 416 aaPredicted RBP7.31□□□□□ -1.24
HERC4-209ENST00000473533 TAF7Q15545 349 aaPredicted RBP7.31□□□□□ -1.24
HERC4-209ENST00000473533 GTPBP4Q9BZE4 634 aaKnown RBP7.31□□□□□ -1.24
HERC4-209ENST00000473533 ZRANB1Q9UGI0 708 aa7.31□□□□□ -1.24
HERC4-209ENST00000473533 ELP1O95163 1332 aa7.31□□□□□ -1.24
HERC4-209ENST00000473533 GOLGA6L4A6NEF3 574 aa7.3□□□□□ -1.24
HERC4-209ENST00000473533 MTHFSDQ2M296 383 aaKnown RBP7.3□□□□□ -1.24
HERC4-209ENST00000473533 ARHGAP30Q7Z6I6 1101 aaPredicted RBP7.3□□□□□ -1.24
HERC4-209ENST00000473533 SCAND2PQ9GZW5 306 aaPredicted RBP7.3□□□□□ -1.24
HERC4-209ENST00000473533 LRRFIP2Q9Y608 721 aaKnown RBP7.3□□□□□ -1.24
HERC4-209ENST00000473533 SURF6O75683 361 aaKnown RBP7.3□□□□□ -1.24
HERC4-209ENST00000473533 POLA2Q14181 598 aa7.3□□□□□ -1.24
HERC4-209ENST00000473533 CLASRPQ8N2M8 674 aaKnown RBP7.3□□□□□ -1.24
HERC4-209ENST00000473533 RHPN1Q8TCX5 695 aa7.3□□□□□ -1.24
HERC4-209ENST00000473533 DDX19AQ9NUU7 478 aaKnown RBP7.3□□□□□ -1.24
HERC4-209ENST00000473533 TNRQ92752 1358 aa7.3□□□□□ -1.24
HERC4-209ENST00000473533 PLEKHG1Q9ULL1 1385 aa7.3□□□□□ -1.24
HERC4-209ENST00000473533 RIMS1Q86UR5 1692 aaKnown RBP7.3□□□□□ -1.24
HERC4-209ENST00000473533 F6X3S4 739 aa7.3□□□□□ -1.24
HERC4-209ENST00000473533 KRT24Q2M2I5 525 aa7.3□□□□□ -1.24
HERC4-209ENST00000473533 TTC14Q96N46 770 aa7.3□□□□□ -1.24
HERC4-209ENST00000473533 UPF3BQ9BZI7 483 aaKnown RBP7.3□□□□□ -1.24
HERC4-209ENST00000473533 PALD1Q9ULE6 856 aa7.3□□□□□ -1.24
HERC4-209ENST00000473533 SNX14Q9Y5W7 946 aa7.3□□□□□ -1.24
HERC4-209ENST00000473533 MAP3K19Q56UN5 1328 aa7.3□□□□□ -1.24
HERC4-209ENST00000473533 ADGRL3Q9HAR2 1447 aa7.29□□□□□ -1.24
HERC4-209ENST00000473533 NEMFO60524 1076 aa7.29□□□□□ -1.24
HERC4-209ENST00000473533 SYT1P21579 422 aa7.29□□□□□ -1.24
HERC4-209ENST00000473533 OS9Q13438 667 aaPredicted RBP7.29□□□□□ -1.24
HERC4-209ENST00000473533 MAP3K11Q16584 847 aa7.29□□□□□ -1.24
HERC4-209ENST00000473533 G2E3Q7L622 706 aa7.29□□□□□ -1.24
HERC4-209ENST00000473533 FAM200AQ8TCP9 573 aa7.29□□□□□ -1.24
HERC4-209ENST00000473533 PDRG1Q9NUG6 133 aa7.29□□□□□ -1.24
HERC4-209ENST00000473533 NSFL1CQ9UNZ2 370 aaKnown RBP7.29□□□□□ -1.24
HERC4-209ENST00000473533 TMEM2Q9UHN6 1383 aa7.29□□□□□ -1.24
HERC4-209ENST00000473533 HSP90AB2PQ58FF8 381 aa7.29□□□□□ -1.24
HERC4-209ENST00000473533 HDGFL1Q5TGJ6 251 aa7.29□□□□□ -1.24
HERC4-209ENST00000473533 NOL8Q76FK4 1167 aaKnown RBP7.29□□□□□ -1.24
HERC4-209ENST00000473533 PEAK1Q9H792 1746 aa7.29□□□□□ -1.24
HERC4-209ENST00000473533 CHD2O14647 1828 aaKnown RBP7.29□□□□□ -1.24
HERC4-209ENST00000473533 AK2P54819 239 aa7.29□□□□□ -1.24
HERC4-209ENST00000473533 EVI5LQ96CN4 794 aa7.29□□□□□ -1.24
HERC4-209ENST00000473533 FEZ1Q99689 392 aa7.29□□□□□ -1.24
HERC4-209ENST00000473533 LSG1Q9H089 658 aaKnown RBP7.29□□□□□ -1.24
HERC4-209ENST00000473533 NUP62CLQ9H1M0 184 aa7.29□□□□□ -1.24
HERC4-209ENST00000473533 ALDH8A1Q9H2A2 487 aaPredicted RBP7.29□□□□□ -1.24
HERC4-209ENST00000473533 PRR36Q9H6K5 1346 aa7.29□□□□□ -1.24
HERC4-209ENST00000473533 ANKARQ7Z5J8 1434 aa7.29□□□□□ -1.24
HERC4-209ENST00000473533 PNMA6EA0A0J9YXQ4 647 aa7.28□□□□□ -1.24
HERC4-209ENST00000473533 HCLS1P14317 486 aaPredicted RBP7.28□□□□□ -1.24
HERC4-209ENST00000473533 KRT32Q14532 448 aa7.28□□□□□ -1.24
HERC4-209ENST00000473533 KCNB2Q92953 911 aa7.28□□□□□ -1.24
HERC4-209ENST00000473533 HMG20BQ9P0W2 317 aa7.28□□□□□ -1.24
HERC4-209ENST00000473533 CNPY2Q9Y2B0 182 aa7.28□□□□□ -1.24
HERC4-209ENST00000473533 DIP2AQ14689 1571 aa7.28□□□□□ -1.24
HERC4-209ENST00000473533 GADD45BO75293 160 aaPredicted RBP7.28□□□□□ -1.24
HERC4-209ENST00000473533 ALDH1L1O75891 902 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms