RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-204ENST00000468545 ABCC1P33527 1531 aa5.96□□□□□ -1.46
TMEM39A-204ENST00000468545 ARAP3Q8WWN8 1544 aa5.96□□□□□ -1.46
TMEM39A-204ENST00000468545 LMOD1P29536 600 aaPredicted RBP5.96□□□□□ -1.46
TMEM39A-204ENST00000468545 NCOA4Q13772 614 aa5.96□□□□□ -1.46
TMEM39A-204ENST00000468545 EML3Q32P44 896 aa5.96□□□□□ -1.46
TMEM39A-204ENST00000468545 TSGA10IPQ3SY00 556 aa5.96□□□□□ -1.46
TMEM39A-204ENST00000468545 OXLD1Q5BKU9 147 aa5.96□□□□□ -1.46
TMEM39A-204ENST00000468545 ZNF784Q8NCA9 323 aaPredicted RBP5.96□□□□□ -1.46
TMEM39A-204ENST00000468545 TMPRSS4Q9NRS4 437 aa5.96□□□□□ -1.46
TMEM39A-204ENST00000468545 KIF15Q9NS87 1388 aa5.95□□□□□ -1.46
TMEM39A-204ENST00000468545 KIF3BO15066 747 aa5.95□□□□□ -1.46
TMEM39A-204ENST00000468545 MYCP01106 439 aaPredicted RBP5.95□□□□□ -1.46
TMEM39A-204ENST00000468545 ERVK-9P63128 1117 aa5.95□□□□□ -1.46
TMEM39A-204ENST00000468545 ARHGEF5Q12774 1597 aa5.95□□□□□ -1.46
TMEM39A-204ENST00000468545 NAIPQ13075 1403 aa5.95□□□□□ -1.46
TMEM39A-204ENST00000468545 USP4Q13107 963 aa5.95□□□□□ -1.46
TMEM39A-204ENST00000468545 NCOA1Q15788 1441 aa5.95□□□□□ -1.46
TMEM39A-204ENST00000468545 CC2D2BQ6DHV5 1058 aa5.95□□□□□ -1.46
TMEM39A-204ENST00000468545 DEPDC4Q8N2C3 294 aa5.95□□□□□ -1.46
TMEM39A-204ENST00000468545 PBXIP1Q96AQ6 731 aa5.95□□□□□ -1.46
TMEM39A-204ENST00000468545 ZNF775Q96BV0 537 aaPredicted RBP5.95□□□□□ -1.46
TMEM39A-204ENST00000468545 SIRT1Q96EB6 747 aa5.95□□□□□ -1.46
TMEM39A-204ENST00000468545 CDCA7Q9BWT1 371 aaPredicted RBP5.95□□□□□ -1.46
TMEM39A-204ENST00000468545 KLF16Q9BXK1 252 aaPredicted RBP5.95□□□□□ -1.46
TMEM39A-204ENST00000468545 CFAP74Q9C0B2 1584 aa5.95□□□□□ -1.46
TMEM39A-204ENST00000468545 ROCK1Q13464 1354 aa5.94□□□□□ -1.46
TMEM39A-204ENST00000468545 POGZQ7Z3K3 1410 aa5.94□□□□□ -1.46
TMEM39A-204ENST00000468545 ATP5J2-PTCD1G3V325 749 aa5.94□□□□□ -1.46
TMEM39A-204ENST00000468545 AXIN1O15169 862 aa5.94□□□□□ -1.46
TMEM39A-204ENST00000468545 AVPP01185 164 aa5.94□□□□□ -1.46
TMEM39A-204ENST00000468545 TIMP2P16035 220 aa5.94□□□□□ -1.46
TMEM39A-204ENST00000468545 RFX1P22670 979 aa5.94□□□□□ -1.46
TMEM39A-204ENST00000468545 SCTRP47872 440 aa5.94□□□□□ -1.46
TMEM39A-204ENST00000468545 WDR4P57081 412 aaKnown RBP5.94□□□□□ -1.46
TMEM39A-204ENST00000468545 MLECQ14165 292 aa5.94□□□□□ -1.46
TMEM39A-204ENST00000468545 GGT6Q6P531 493 aa5.94□□□□□ -1.46
TMEM39A-204ENST00000468545 CRIPAKQ8N1N5 446 aa5.94□□□□□ -1.46
TMEM39A-204ENST00000468545 HPS1Q92902 700 aa5.94□□□□□ -1.46
TMEM39A-204ENST00000468545 CYLDQ9NQC7 956 aa5.94□□□□□ -1.46
TMEM39A-204ENST00000468545 DACH1Q9UI36 760 aa5.94□□□□□ -1.46
TMEM39A-204ENST00000468545 NOD1Q9Y239 953 aa5.94□□□□□ -1.46
TMEM39A-204ENST00000468545 PPRC1Q5VV67 1664 aaKnown RBP5.94□□□□□ -1.46
TMEM39A-204ENST00000468545 ARID4BQ4LE39 1312 aaPredicted RBP5.94□□□□□ -1.46
TMEM39A-204ENST00000468545 HFM1A2PYH4 1435 aa5.93□□□□□ -1.46
TMEM39A-204ENST00000468545 ANKRD50Q9ULJ7 1429 aa5.93□□□□□ -1.46
TMEM39A-204ENST00000468545 LILRA1O75019 489 aa5.93□□□□□ -1.46
TMEM39A-204ENST00000468545 PPP1R15AO75807 674 aaPredicted RBP5.93□□□□□ -1.46
TMEM39A-204ENST00000468545 ZIC2O95409 532 aaPredicted RBP5.93□□□□□ -1.46
TMEM39A-204ENST00000468545 NEUROD1Q13562 356 aa5.93□□□□□ -1.46
TMEM39A-204ENST00000468545 TRIM50Q86XT4 487 aa5.93□□□□□ -1.46
TMEM39A-204ENST00000468545 ITPKCQ96DU7 683 aa5.93□□□□□ -1.46
TMEM39A-204ENST00000468545 MPHOSPH9Q99550 1183 aa5.93□□□□□ -1.46
TMEM39A-204ENST00000468545 ESF1Q9H501 851 aaKnown RBP5.93□□□□□ -1.46
TMEM39A-204ENST00000468545 ZNF518AQ6AHZ1 1483 aa5.93□□□□□ -1.46
TMEM39A-204ENST00000468545 COL17A1Q9UMD9 1497 aaPredicted RBP5.93□□□□□ -1.46
TMEM39A-204ENST00000468545 NUP155O75694 1391 aa5.93□□□□□ -1.46
TMEM39A-204ENST00000468545 RTEL1-TNFRSF6BF6WH68 1400 aa5.92□□□□□ -1.46
TMEM39A-204ENST00000468545 ADGRL2O95490 1459 aa5.92□□□□□ -1.46
TMEM39A-204ENST00000468545 SHANK2Q9UPX8 1470 aa5.92□□□□□ -1.46
TMEM39A-204ENST00000468545 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP5.92□□□□□ -1.46
TMEM39A-204ENST00000468545 ATP1A2P50993 1020 aa5.92□□□□□ -1.46
TMEM39A-204ENST00000468545 SRPK2P78362 688 aaKnown RBP5.92□□□□□ -1.46
TMEM39A-204ENST00000468545 CTC1Q2NKJ3 1217 aa5.92□□□□□ -1.46
TMEM39A-204ENST00000468545 CYP2U1Q7Z449 544 aa5.92□□□□□ -1.46
TMEM39A-204ENST00000468545 ZFAND3Q9H8U3 227 aa5.92□□□□□ -1.46
TMEM39A-204ENST00000468545 VRTNQ9H8Y1 702 aa5.92□□□□□ -1.46
TMEM39A-204ENST00000468545 MKRN1Q9UHC7 482 aaKnown RBP5.92□□□□□ -1.46
TMEM39A-204ENST00000468545 KDM6BO15054 1643 aa5.92□□□□□ -1.46
TMEM39A-204ENST00000468545 DHX29Q7Z478 1369 aaKnown RBP5.92□□□□□ -1.46
TMEM39A-204ENST00000468545 YEATS2Q9ULM3 1422 aa5.91□□□□□ -1.46
TMEM39A-204ENST00000468545 ATP7AQ04656 1500 aa5.91□□□□□ -1.46
TMEM39A-204ENST00000468545 GTF2IP78347 998 aa5.91□□□□□ -1.46
TMEM39A-204ENST00000468545 Q6ZVU0 165 aa5.91□□□□□ -1.46
TMEM39A-204ENST00000468545 OSBPL3Q9H4L5 887 aa5.91□□□□□ -1.46
TMEM39A-204ENST00000468545 CROCC2H7BZ55 1655 aa5.91□□□□□ -1.46
TMEM39A-204ENST00000468545 ADGBQ8N7X0 1667 aa5.91□□□□□ -1.46
TMEM39A-204ENST00000468545 MLH3Q9UHC1 1453 aa5.9□□□□□ -1.46
TMEM39A-204ENST00000468545 MAST1Q9Y2H9 1570 aa5.9□□□□□ -1.46
TMEM39A-204ENST00000468545 FAM196BA6NMK8 535 aa5.9□□□□□ -1.46
TMEM39A-204ENST00000468545 CAPN5O15484 640 aaPredicted RBP5.9□□□□□ -1.46
TMEM39A-204ENST00000468545 ADH1AP07327 375 aa5.9□□□□□ -1.46
TMEM39A-204ENST00000468545 SMCPP49901 116 aaPredicted RBP5.9□□□□□ -1.46
TMEM39A-204ENST00000468545 OGFOD1Q8N543 542 aa5.9□□□□□ -1.46
TMEM39A-204ENST00000468545 MEIOBQ8N635 442 aa5.9□□□□□ -1.46
TMEM39A-204ENST00000468545 SIN3AQ96ST3 1273 aa5.9□□□□□ -1.46
TMEM39A-204ENST00000468545 GMPR2Q9P2T1 348 aaKnown RBP5.9□□□□□ -1.46
TMEM39A-204ENST00000468545 DHX57Q6P158 1386 aaKnown RBP5.9□□□□□ -1.47
TMEM39A-204ENST00000468545 A2MP01023 1474 aa5.9□□□□□ -1.47
TMEM39A-204ENST00000468545 ZFYVE16Q7Z3T8 1539 aa5.89□□□□□ -1.47
TMEM39A-204ENST00000468545 DUOX2Q9NRD8 1548 aa5.89□□□□□ -1.47
TMEM39A-204ENST00000468545 KIDINS220Q9ULH0 1771 aa5.89□□□□□ -1.47
TMEM39A-204ENST00000468545 USP17L15C9J2P7 530 aa5.89□□□□□ -1.47
TMEM39A-204ENST00000468545 USP17L10C9JJH3 530 aa5.89□□□□□ -1.47
TMEM39A-204ENST00000468545 USP17L13C9JLJ4 530 aa5.89□□□□□ -1.47
TMEM39A-204ENST00000468545 USP17L12C9JPN9 530 aa5.89□□□□□ -1.47
TMEM39A-204ENST00000468545 USP17L11C9JVI0 530 aa5.89□□□□□ -1.47
TMEM39A-204ENST00000468545 USP17L21D6R901 530 aa5.89□□□□□ -1.47
TMEM39A-204ENST00000468545 USP17L18D6R9N7 530 aa5.89□□□□□ -1.47
TMEM39A-204ENST00000468545 USP17L22D6RA61 530 aa5.89□□□□□ -1.47
TMEM39A-204ENST00000468545 USP17L17D6RBQ6 530 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 130.2 ms