RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 PASKQ96RG2 1323 aa8.29□□□□□ -1.08
HMGB1-207ENST00000468384 LORP23490 312 aaPredicted RBP8.29□□□□□ -1.08
HMGB1-207ENST00000468384 ZNF454Q8N9F8 522 aa8.29□□□□□ -1.08
HMGB1-207ENST00000468384 KIAA0232Q92628 1395 aa8.29□□□□□ -1.08
HMGB1-207ENST00000468384 KIF1AQ12756 1690 aa8.29□□□□□ -1.08
HMGB1-207ENST00000468384 RANBP2P49792 3224 aaKnown RBP8.28□□□□□ -1.08
HMGB1-207ENST00000468384 PRKCSHP14314 528 aaPredicted RBP8.28□□□□□ -1.08
HMGB1-207ENST00000468384 COL23A1Q86Y22 540 aaPredicted RBP8.28□□□□□ -1.08
HMGB1-207ENST00000468384 HIRIP3Q9BW71 556 aaPredicted RBP8.28□□□□□ -1.08
HMGB1-207ENST00000468384 MKI67P46013 3256 aaKnown RBP8.27□□□□□ -1.09
HMGB1-207ENST00000468384 LTBP1Q14766 1721 aa8.27□□□□□ -1.09
HMGB1-207ENST00000468384 FAM181BA6NEQ2 426 aa8.27□□□□□ -1.09
HMGB1-207ENST00000468384 PTPREP23469 700 aa8.27□□□□□ -1.09
HMGB1-207ENST00000468384 VSIG10Q8N0Z9 540 aa8.27□□□□□ -1.09
HMGB1-207ENST00000468384 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.27□□□□□ -1.09
HMGB1-207ENST00000468384 PRR36Q9H6K5 1346 aa8.27□□□□□ -1.09
HMGB1-207ENST00000468384 FAM187AA6NFU0 413 aa8.26□□□□□ -1.09
HMGB1-207ENST00000468384 GLTPD2A6NH11 291 aa8.26□□□□□ -1.09
HMGB1-207ENST00000468384 PPEF1O14829 653 aaPredicted RBP8.26□□□□□ -1.09
HMGB1-207ENST00000468384 CA12O43570 354 aa8.26□□□□□ -1.09
HMGB1-207ENST00000468384 TJAP1Q5JTD0 557 aa8.26□□□□□ -1.09
HMGB1-207ENST00000468384 PSMG3-AS1Q96PY0 264 aa8.26□□□□□ -1.09
HMGB1-207ENST00000468384 SPATA31E1Q6ZUB1 1445 aa8.26□□□□□ -1.09
HMGB1-207ENST00000468384 TUBGCP6Q96RT7 1819 aa8.25□□□□□ -1.09
HMGB1-207ENST00000468384 TMC2Q8TDI7 906 aa8.25□□□□□ -1.09
HMGB1-207ENST00000468384 IGSF5Q9NSI5 407 aa8.25□□□□□ -1.09
HMGB1-207ENST00000468384 NAIPQ13075 1403 aa8.24□□□□□ -1.09
HMGB1-207ENST00000468384 CHD8Q9HCK8 2581 aa8.24□□□□□ -1.09
HMGB1-207ENST00000468384 LRRC37A3O60309 1634 aa8.24□□□□□ -1.09
HMGB1-207ENST00000468384 FCHSD2O94868 740 aa8.23□□□□□ -1.09
HMGB1-207ENST00000468384 SLC27A3Q5K4L6 730 aa8.23□□□□□ -1.09
HMGB1-207ENST00000468384 GPR101Q96P66 508 aaPredicted RBP8.23□□□□□ -1.09
HMGB1-207ENST00000468384 GMPR2Q9P2T1 348 aaKnown RBP8.23□□□□□ -1.09
HMGB1-207ENST00000468384 BAHCC1Q9P281 2608 aa8.23□□□□□ -1.09
HMGB1-207ENST00000468384 ERBB4Q15303 1308 aa8.23□□□□□ -1.09
HMGB1-207ENST00000468384 ZC3H4Q9UPT8 1303 aaKnown RBP8.23□□□□□ -1.09
HMGB1-207ENST00000468384 THSD7BQ9C0I4 1608 aa8.22□□□□□ -1.09
HMGB1-207ENST00000468384 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.22□□□□□ -1.09
HMGB1-207ENST00000468384 FBXO22Q8NEZ5 403 aa8.22□□□□□ -1.09
HMGB1-207ENST00000468384 CAPNS2Q96L46 248 aa8.22□□□□□ -1.09
HMGB1-207ENST00000468384 TAOK2Q9UL54 1235 aa8.22□□□□□ -1.09
HMGB1-207ENST00000468384 SYNGAP1Q96PV0 1343 aa8.22□□□□□ -1.09
HMGB1-207ENST00000468384 BRCA2P51587 3418 aa8.21□□□□□ -1.09
HMGB1-207ENST00000468384 ZC3H6P61129 1189 aaKnown RBP8.21□□□□□ -1.1
HMGB1-207ENST00000468384 PROX2Q3B8N5 592 aa8.21□□□□□ -1.1
HMGB1-207ENST00000468384 SPOCK2Q92563 424 aa8.21□□□□□ -1.1
HMGB1-207ENST00000468384 ZFRQ96KR1 1074 aaKnown RBP8.21□□□□□ -1.1
HMGB1-207ENST00000468384 CASKIN1Q8WXD9 1431 aa8.2□□□□□ -1.1
HMGB1-207ENST00000468384 NRXN1Q9ULB1 1477 aa8.2□□□□□ -1.1
HMGB1-207ENST00000468384 KCNQ4P56696 695 aa8.2□□□□□ -1.1
HMGB1-207ENST00000468384 CCDC24Q8N4L8 307 aa8.2□□□□□ -1.1
HMGB1-207ENST00000468384 BBXQ8WY36 941 aaPredicted RBP8.2□□□□□ -1.1
HMGB1-207ENST00000468384 ACSBG1Q96GR2 724 aa8.2□□□□□ -1.1
HMGB1-207ENST00000468384 HPS5Q9UPZ3 1129 aa8.2□□□□□ -1.1
HMGB1-207ENST00000468384 KDM2AQ9Y2K7 1162 aa8.2□□□□□ -1.1
HMGB1-207ENST00000468384 A0A0G2JLW4 131 aa8.19□□□□□ -1.1
HMGB1-207ENST00000468384 ECM2O94769 699 aaPredicted RBP8.19□□□□□ -1.1
HMGB1-207ENST00000468384 ECE1P42892 770 aa8.19□□□□□ -1.1
HMGB1-207ENST00000468384 ABT1Q9ULW3 272 aaKnown RBP8.19□□□□□ -1.1
HMGB1-207ENST00000468384 ERBINQ96RT1 1412 aa8.19□□□□□ -1.1
HMGB1-207ENST00000468384 GRM1Q13255 1194 aa8.18□□□□□ -1.1
HMGB1-207ENST00000468384 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.18□□□□□ -1.1
HMGB1-207ENST00000468384 ANKRD30BQ9BXX2 1392 aa8.18□□□□□ -1.1
HMGB1-207ENST00000468384 MAP2K2P36507 400 aa8.17□□□□□ -1.1
HMGB1-207ENST00000468384 TGFB2P61812 414 aa8.17□□□□□ -1.1
HMGB1-207ENST00000468384 CYP4F22Q6NT55 531 aa8.17□□□□□ -1.1
HMGB1-207ENST00000468384 PAXIP1Q6ZW49 1069 aaPredicted RBP8.17□□□□□ -1.1
HMGB1-207ENST00000468384 ZSCAN1Q8NBB4 408 aa8.17□□□□□ -1.1
HMGB1-207ENST00000468384 RABGEF1Q9UJ41 708 aa8.17□□□□□ -1.1
HMGB1-207ENST00000468384 USP6P35125 1406 aa8.17□□□□□ -1.1
HMGB1-207ENST00000468384 CRYBG1Q9Y4K1 1723 aa8.17□□□□□ -1.1
HMGB1-207ENST00000468384 MUC3AQ02505 3323 aa8.16□□□□□ -1.1
HMGB1-207ENST00000468384 CRB1P82279 1406 aa8.16□□□□□ -1.1
HMGB1-207ENST00000468384 NHSQ6T4R5 1651 aa8.16□□□□□ -1.1
HMGB1-207ENST00000468384 TRPM1Q7Z4N2 1603 aa8.16□□□□□ -1.1
HMGB1-207ENST00000468384 ZNF516Q92618 1163 aa8.16□□□□□ -1.1
HMGB1-207ENST00000468384 EMID1Q96A84 441 aaPredicted RBP8.16□□□□□ -1.1
HMGB1-207ENST00000468384 CIZ1Q9ULV3 898 aaPredicted RBP8.16□□□□□ -1.1
HMGB1-207ENST00000468384 COL18A1P39060 1754 aa8.15□□□□□ -1.1
HMGB1-207ENST00000468384 ALS2Q96Q42 1657 aa8.15□□□□□ -1.1
HMGB1-207ENST00000468384 TERTO14746 1132 aaKnown RBP8.15□□□□□ -1.1
HMGB1-207ENST00000468384 AOC2O75106 756 aa8.15□□□□□ -1.1
HMGB1-207ENST00000468384 NLRP6P59044 892 aa8.15□□□□□ -1.1
HMGB1-207ENST00000468384 MAP3K12Q12852 859 aa8.15□□□□□ -1.1
HMGB1-207ENST00000468384 TSR3Q9UJK0 312 aaKnown RBP8.15□□□□□ -1.1
HMGB1-207ENST00000468384 STXBP5LQ9Y2K9 1186 aa8.15□□□□□ -1.1
HMGB1-207ENST00000468384 AKAP12Q02952 1782 aa8.15□□□□□ -1.11
HMGB1-207ENST00000468384 RGL2O15211 777 aa8.14□□□□□ -1.11
HMGB1-207ENST00000468384 SMIM5Q71RC9 77 aa8.14□□□□□ -1.11
HMGB1-207ENST00000468384 LDHDQ86WU2 507 aa8.14□□□□□ -1.11
HMGB1-207ENST00000468384 NKX2-3Q8TAU0 364 aa8.14□□□□□ -1.11
HMGB1-207ENST00000468384 DCAF5Q96JK2 942 aa8.14□□□□□ -1.11
HMGB1-207ENST00000468384 RBM27Q9P2N5 1060 aaKnown RBP8.14□□□□□ -1.11
HMGB1-207ENST00000468384 KNDC1Q76NI1 1749 aa8.13□□□□□ -1.11
HMGB1-207ENST00000468384 TRPM3Q9HCF6 1732 aaPredicted RBP8.13□□□□□ -1.11
HMGB1-207ENST00000468384 TNFRSF10AO00220 468 aa8.13□□□□□ -1.11
HMGB1-207ENST00000468384 DPEP1P16444 411 aa8.13□□□□□ -1.11
HMGB1-207ENST00000468384 BRPF1P55201 1214 aaPredicted RBP8.13□□□□□ -1.11
HMGB1-207ENST00000468384 CTU1Q7Z7A3 348 aaKnown RBP8.13□□□□□ -1.11
HMGB1-207ENST00000468384 MTRQ99707 1265 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms