RNA–Protein interactions for RNA: ENST00000428843.5

PTPN18-205, Transcript of protein tyrosine phosphatase, non-receptor type 18, human

TSL 3

Gene PTPN18, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN18-205	ENST00000428843	LAMB4	A4D0S4	1761 aa		29.06	■■■□□ 2.24
PTPN18-205	ENST00000428843	PNPLA7	Q6ZV29	1317 aa		29.05	■■■□□ 2.24
PTPN18-205	ENST00000428843	GIGYF1	O75420	1035 aa	Predicted RBP	29.05	■■■□□ 2.24
PTPN18-205	ENST00000428843	INTS5	Q6P9B9	1019 aa	Known RBP	29.05	■■■□□ 2.24
PTPN18-205	ENST00000428843	AMIGO3	Q86WK7	504 aa		29.05	■■■□□ 2.24
PTPN18-205	ENST00000428843	CCDC87	Q9NVE4	849 aa		29.05	■■■□□ 2.24
PTPN18-205	ENST00000428843	SMIM5	Q71RC9	77 aa		29.04	■■■□□ 2.24
PTPN18-205	ENST00000428843	CASZ1	Q86V15	1759 aa		29.03	■■■□□ 2.24
PTPN18-205	ENST00000428843	KRT24	Q2M2I5	525 aa		29.03	■■■□□ 2.24
PTPN18-205	ENST00000428843	PDGFD	Q9GZP0	370 aa	Predicted RBP	29.03	■■■□□ 2.24
PTPN18-205	ENST00000428843	RPS6KA4	O75676	772 aa		29.02	■■■□□ 2.24
PTPN18-205	ENST00000428843	PHF14	O94880	888 aa		29.02	■■■□□ 2.24
PTPN18-205	ENST00000428843	TSR2	Q969E8	191 aa	Known RBP	29.02	■■■□□ 2.24
PTPN18-205	ENST00000428843	ZBTB1	Q9Y2K1	713 aa		29.01	■■■□□ 2.23
PTPN18-205	ENST00000428843	RTCB	Q9Y3I0	505 aa	Known RBP	29.01	■■■□□ 2.23
PTPN18-205	ENST00000428843	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	29	■■■□□ 2.23
PTPN18-205	ENST00000428843	A1BG	P04217	495 aa		29	■■■□□ 2.23
PTPN18-205	ENST00000428843	SSFA2	P28290	1259 aa		29	■■■□□ 2.23
PTPN18-205	ENST00000428843	COL23A1	Q86Y22	540 aa	Predicted RBP	29	■■■□□ 2.23
PTPN18-205	ENST00000428843	SPINK5	Q9NQ38	1064 aa	Predicted RBP	29	■■■□□ 2.23
PTPN18-205	ENST00000428843	FLAD1	Q8NFF5	587 aa		28.99	■■■□□ 2.23
PTPN18-205	ENST00000428843	CANX	P27824	592 aa	Known RBP	28.98	■■■□□ 2.23
PTPN18-205	ENST00000428843	HNRNPU	Q00839	825 aa	Known RBP eCLIP	28.97	■■■□□ 2.23
PTPN18-205	ENST00000428843	SOS1	Q07889	1333 aa	Predicted RBP	28.96	■■■□□ 2.23
PTPN18-205	ENST00000428843	MSH5	O43196	834 aa		28.96	■■■□□ 2.23
PTPN18-205	ENST00000428843	FANCI	Q9NVI1	1328 aa		28.95	■■■□□ 2.23
PTPN18-205	ENST00000428843	GOLGA2	Q08379	1002 aa		28.95	■■■□□ 2.22
PTPN18-205	ENST00000428843	TRAPPC3L	Q5T215	181 aa		28.95	■■■□□ 2.22
PTPN18-205	ENST00000428843	DUSP27	Q5VZP5	1158 aa		28.95	■■■□□ 2.22
PTPN18-205	ENST00000428843	C4A	P0C0L4	1744 aa		28.94	■■■□□ 2.22
PTPN18-205	ENST00000428843	ADRA2B	P18089	450 aa		28.94	■■■□□ 2.22
PTPN18-205	ENST00000428843	PIP4K2A	P48426	406 aa	Predicted RBP	28.94	■■■□□ 2.22
PTPN18-205	ENST00000428843	HOXB7	P09629	217 aa		28.93	■■■□□ 2.22
PTPN18-205	ENST00000428843	EIF2S2	P20042	333 aa	Known RBP	28.93	■■■□□ 2.22
PTPN18-205	ENST00000428843	C8orf58	Q8NAV2	365 aa		28.93	■■■□□ 2.22
PTPN18-205	ENST00000428843	ARHGEF1	Q92888	912 aa	Known RBP	28.93	■■■□□ 2.22
PTPN18-205	ENST00000428843	MYH16	Q9H6N6	1097 aa		28.93	■■■□□ 2.22
PTPN18-205	ENST00000428843	COL15A1	P39059	1388 aa		28.91	■■■□□ 2.22
PTPN18-205	ENST00000428843	NBPF26	B4DH59	902 aa		28.91	■■■□□ 2.22
PTPN18-205	ENST00000428843	ELL2	O00472	640 aa	Predicted RBP	28.91	■■■□□ 2.22
PTPN18-205	ENST00000428843	IL6ST	P40189	918 aa	Predicted RBP	28.91	■■■□□ 2.22
PTPN18-205	ENST00000428843	EIF5	P55010	431 aa	Known RBP	28.91	■■■□□ 2.22
PTPN18-205	ENST00000428843	NBPF10	Q6P3W6	841 aa	Known RBP	28.91	■■■□□ 2.22
PTPN18-205	ENST00000428843	NBPF15	Q8N660	670 aa		28.91	■■■□□ 2.22
PTPN18-205	ENST00000428843	ZBTB7A	O95365	584 aa		28.9	■■■□□ 2.22
PTPN18-205	ENST00000428843	TSPYL6	Q8N831	410 aa		28.9	■■■□□ 2.22
PTPN18-205	ENST00000428843	SLC16A10	Q8TF71	515 aa		28.9	■■■□□ 2.22
PTPN18-205	ENST00000428843	NECTIN2	Q92692	538 aa		28.9	■■■□□ 2.22
PTPN18-205	ENST00000428843		E9PSI1	815 aa		28.89	■■■□□ 2.22
PTPN18-205	ENST00000428843	RFC4	P35249	363 aa		28.89	■■■□□ 2.22
PTPN18-205	ENST00000428843	ZNF330	Q9Y3S2	320 aa	Predicted RBP	28.89	■■■□□ 2.22
PTPN18-205	ENST00000428843	SLFN5	Q08AF3	891 aa		28.88	■■■□□ 2.21
PTPN18-205	ENST00000428843	CDCA7L	Q96GN5	454 aa		28.88	■■■□□ 2.21
PTPN18-205	ENST00000428843	ERBB4	Q15303	1308 aa		28.88	■■■□□ 2.21
PTPN18-205	ENST00000428843	HDGFL1	Q5TGJ6	251 aa		28.87	■■■□□ 2.21
PTPN18-205	ENST00000428843	MTFR1L	Q9H019	292 aa		28.87	■■■□□ 2.21
PTPN18-205	ENST00000428843	EXOSC9	Q06265	439 aa	Known RBP	28.86	■■■□□ 2.21
PTPN18-205	ENST00000428843		A0A087WZG4	1122 aa		28.85	■■■□□ 2.21
PTPN18-205	ENST00000428843	MYL6B	P14649	208 aa		28.85	■■■□□ 2.21
PTPN18-205	ENST00000428843	PDIA6	Q15084	440 aa		28.85	■■■□□ 2.21
PTPN18-205	ENST00000428843	TWISTNB	Q3B726	338 aa	Predicted RBP	28.85	■■■□□ 2.21
PTPN18-205	ENST00000428843	SRP68	Q9UHB9	627 aa	Known RBP	28.85	■■■□□ 2.21
PTPN18-205	ENST00000428843	ATF5	Q9Y2D1	282 aa	Predicted RBP	28.85	■■■□□ 2.21
PTPN18-205	ENST00000428843	NPM2	Q86SE8	214 aa	Known RBP	28.84	■■■□□ 2.21
PTPN18-205	ENST00000428843	USP42	Q9H9J4	1324 aa	Known RBP	28.84	■■■□□ 2.21
PTPN18-205	ENST00000428843	COL24A1	Q17RW2	1714 aa		28.83	■■■□□ 2.21
PTPN18-205	ENST00000428843	MSL1	Q68DK7	614 aa		28.83	■■■□□ 2.21
PTPN18-205	ENST00000428843	ANXA1	P04083	346 aa		28.82	■■■□□ 2.2
PTPN18-205	ENST00000428843	PROSER3	Q2NL68	480 aa		28.82	■■■□□ 2.2
PTPN18-205	ENST00000428843	SPON1	Q9HCB6	807 aa		28.82	■■■□□ 2.2
PTPN18-205	ENST00000428843	CHPF2	Q9P2E5	772 aa		28.82	■■■□□ 2.2
PTPN18-205	ENST00000428843	NARF	Q9UHQ1	456 aa		28.82	■■■□□ 2.2
PTPN18-205	ENST00000428843	ZBED9	Q6R2W3	1325 aa		28.81	■■■□□ 2.2
PTPN18-205	ENST00000428843	ZPR1	O75312	459 aa		28.81	■■■□□ 2.2
PTPN18-205	ENST00000428843	GYS1	P13807	737 aa		28.81	■■■□□ 2.2
PTPN18-205	ENST00000428843	USPL1	Q5W0Q7	1092 aa		28.81	■■■□□ 2.2
PTPN18-205	ENST00000428843	TRMT2A	Q8IZ69	625 aa	Known RBP	28.81	■■■□□ 2.2
PTPN18-205	ENST00000428843	ARX	Q96QS3	562 aa		28.81	■■■□□ 2.2
PTPN18-205	ENST00000428843	DDX21	Q9NR30	783 aa	Known RBP eCLIP	28.81	■■■□□ 2.2
PTPN18-205	ENST00000428843	TBC1D2B	Q9UPU7	963 aa		28.81	■■■□□ 2.2
PTPN18-205	ENST00000428843	LRP10	Q7Z4F1	713 aa		28.8	■■■□□ 2.2
PTPN18-205	ENST00000428843	DZIP3	Q86Y13	1208 aa	Known RBP	28.8	■■■□□ 2.2
PTPN18-205	ENST00000428843	VAMP4	O75379	141 aa		28.79	■■■□□ 2.2
PTPN18-205	ENST00000428843	BCOR	Q6W2J9	1755 aa		28.79	■■■□□ 2.2
PTPN18-205	ENST00000428843	SCN7A	Q01118	1682 aa		28.79	■■■□□ 2.2
PTPN18-205	ENST00000428843	CCDC30	Q5VVM6	783 aa		28.78	■■■□□ 2.2
PTPN18-205	ENST00000428843	DBF4	Q9UBU7	674 aa	Predicted RBP	28.78	■■■□□ 2.2
PTPN18-205	ENST00000428843	LRP5	O75197	1615 aa		28.77	■■■□□ 2.2
PTPN18-205	ENST00000428843	PTGER2	P43116	358 aa		28.77	■■■□□ 2.2
PTPN18-205	ENST00000428843	CHMP4A	Q9BY43	222 aa		28.77	■■■□□ 2.2
PTPN18-205	ENST00000428843	BCL2L12	Q9HB09	334 aa		28.77	■■■□□ 2.2
PTPN18-205	ENST00000428843	CAMTA2	O94983	1202 aa		28.76	■■■□□ 2.19
PTPN18-205	ENST00000428843	FKBP8	Q14318	412 aa		28.76	■■■□□ 2.19
PTPN18-205	ENST00000428843	SGIP1	Q9BQI5	828 aa		28.76	■■■□□ 2.19
PTPN18-205	ENST00000428843	TTLL7	Q6ZT98	887 aa		28.75	■■■□□ 2.19
PTPN18-205	ENST00000428843	NLGN1	Q8N2Q7	840 aa		28.75	■■■□□ 2.19
PTPN18-205	ENST00000428843	TCERG1	O14776	1098 aa	Known RBP	28.74	■■■□□ 2.19
PTPN18-205	ENST00000428843	XAGE3	Q8WTP9	111 aa		28.73	■■■□□ 2.19
PTPN18-205	ENST00000428843	HYPK	Q9NX55	129 aa		28.73	■■■□□ 2.19
PTPN18-205	ENST00000428843	POLD1	P28340	1107 aa		28.72	■■■□□ 2.19

Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms