RNA–Protein interactions for RNA: ENST00000428287.6

RIF1-203, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RIF1, Length 7,722 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-203ENST00000428287 CHMP7Q8WUX9 453 aaPredicted RBP6.15□□□□□ -1.42
RIF1-203ENST00000428287 GRWD1Q9BQ67 446 aaKnown RBP eCLIP6.15□□□□□ -1.427e-7■■■□□ 15.4
RIF1-203ENST00000428287 EFCC1Q9HA90 598 aa6.15□□□□□ -1.42
RIF1-203ENST00000428287 GADD45BO75293 160 aaPredicted RBP6.15□□□□□ -1.42
RIF1-203ENST00000428287 PTMAP06454 111 aaKnown RBP6.15□□□□□ -1.42
RIF1-203ENST00000428287 PLA2G4DQ86XP0 818 aa6.15□□□□□ -1.42
RIF1-203ENST00000428287 HSPA4P34932 840 aa6.15□□□□□ -1.42
RIF1-203ENST00000428287 NFE2L2Q16236 605 aa6.15□□□□□ -1.42
RIF1-203ENST00000428287 PTPRCP08575 1304 aa6.15□□□□□ -1.42
RIF1-203ENST00000428287 KIF2AO00139 706 aaPredicted RBP6.15□□□□□ -1.43
RIF1-203ENST00000428287 ESYT1Q9BSJ8 1104 aa6.15□□□□□ -1.43
RIF1-203ENST00000428287 BCL11BQ9C0K0 894 aaPredicted RBP6.15□□□□□ -1.43
RIF1-203ENST00000428287 ATP7BP35670 1465 aa6.15□□□□□ -1.43
RIF1-203ENST00000428287 PARP4Q9UKK3 1724 aaKnown RBP6.15□□□□□ -1.43
RIF1-203ENST00000428287 CACTINQ8WUQ7 758 aaKnown RBP6.15□□□□□ -1.43
RIF1-203ENST00000428287 KCNB2Q92953 911 aa6.15□□□□□ -1.43
RIF1-203ENST00000428287 FEZ2Q9UHY8 353 aaPredicted RBP6.15□□□□□ -1.43
RIF1-203ENST00000428287 AOX1Q06278 1338 aa6.15□□□□□ -1.43
RIF1-203ENST00000428287 SOS1Q07889 1333 aaPredicted RBP6.15□□□□□ -1.43
RIF1-203ENST00000428287 GOLGA6L6A8MZA4 724 aa6.14□□□□□ -1.43
RIF1-203ENST00000428287 NEMFO60524 1076 aa6.14□□□□□ -1.43
RIF1-203ENST00000428287 SYT1P21579 422 aa6.14□□□□□ -1.43
RIF1-203ENST00000428287 GNAI1P63096 354 aa6.14□□□□□ -1.43
RIF1-203ENST00000428287 SPDYE4A6NLX3 237 aa6.14□□□□□ -1.43
RIF1-203ENST00000428287 ATG3Q9NT62 314 aa6.14□□□□□ -1.43
RIF1-203ENST00000428287 KDM3BQ7LBC6 1761 aa6.14□□□□□ -1.43
RIF1-203ENST00000428287 TDRD7Q8NHU6 1098 aaKnown RBP6.14□□□□□ -1.43
RIF1-203ENST00000428287 ZNF446Q9NWS9 450 aa6.14□□□□□ -1.43
RIF1-203ENST00000428287 ARHGEF10O15013 1369 aa6.14□□□□□ -1.43
RIF1-203ENST00000428287 IQCB1Q15051 598 aa6.14□□□□□ -1.43
RIF1-203ENST00000428287 C17orf53Q8N3J3 647 aaPredicted RBP6.14□□□□□ -1.43
RIF1-203ENST00000428287 ZNF397Q8NF99 534 aaPredicted RBP6.14□□□□□ -1.43
RIF1-203ENST00000428287 ZNF215Q9UL58 517 aaPredicted RBP6.14□□□□□ -1.43
RIF1-203ENST00000428287 ERO1AQ96HE7 468 aa6.14□□□□□ -1.43
RIF1-203ENST00000428287 SRCIN1Q9C0H9 1055 aa6.14□□□□□ -1.43
RIF1-203ENST00000428287 DLC1Q96QB1 1528 aa6.14□□□□□ -1.43
RIF1-203ENST00000428287 CCDC192P0DO97 292 aa6.14□□□□□ -1.43
RIF1-203ENST00000428287 CCDC93Q567U6 631 aa6.14□□□□□ -1.43
RIF1-203ENST00000428287 RICTORQ6R327 1708 aa6.14□□□□□ -1.43
RIF1-203ENST00000428287 TUBB4AP04350 444 aa6.13□□□□□ -1.43
RIF1-203ENST00000428287 GEMIN8Q9NWZ8 242 aaKnown RBP6.13□□□□□ -1.43
RIF1-203ENST00000428287 USP54Q70EL1 1684 aa6.13□□□□□ -1.43
RIF1-203ENST00000428287 SPEF2Q9C093 1822 aa6.13□□□□□ -1.43
RIF1-203ENST00000428287 GIGYF1O75420 1035 aaPredicted RBP6.13□□□□□ -1.43
RIF1-203ENST00000428287 FOXD4L1Q9NU39 408 aa6.13□□□□□ -1.43
RIF1-203ENST00000428287 DNAJC5BQ9UF47 199 aa6.13□□□□□ -1.43
RIF1-203ENST00000428287 MSH6P52701 1360 aa6.13□□□□□ -1.43
RIF1-203ENST00000428287 ATP8B1O43520 1251 aa6.13□□□□□ -1.43
RIF1-203ENST00000428287 FBXO38Q6PIJ6 1188 aa6.13□□□□□ -1.43
RIF1-203ENST00000428287 MRFAP1L1Q96HT8 127 aa6.13□□□□□ -1.43
RIF1-203ENST00000428287 PSD3Q9NYI0 1048 aa6.13□□□□□ -1.43
RIF1-203ENST00000428287 DIP2AQ14689 1571 aa6.13□□□□□ -1.43
RIF1-203ENST00000428287 ZSCAN22P10073 491 aaPredicted RBP6.13□□□□□ -1.43
RIF1-203ENST00000428287 TSPYL6Q8N831 410 aa6.13□□□□□ -1.43
RIF1-203ENST00000428287 IQUBQ8NA54 791 aa6.13□□□□□ -1.43
RIF1-203ENST00000428287 RIMS2Q9UQ26 1411 aa6.13□□□□□ -1.43
RIF1-203ENST00000428287 BAZ2AQ9UIF9 1905 aaKnown RBP6.13□□□□□ -1.43
RIF1-203ENST00000428287 CHMLP26374 656 aa6.13□□□□□ -1.43
RIF1-203ENST00000428287 KCNJ4P48050 445 aa6.13□□□□□ -1.43
RIF1-203ENST00000428287 IGSF3O75054 1194 aa6.13□□□□□ -1.43
RIF1-203ENST00000428287 RAD51AP2Q09MP3 1159 aa6.13□□□□□ -1.43
RIF1-203ENST00000428287 OTUD7AQ8TE49 926 aaPredicted RBP6.13□□□□□ -1.43
RIF1-203ENST00000428287 PALD1Q9ULE6 856 aa6.13□□□□□ -1.43
RIF1-203ENST00000428287 V9GYY5 206 aaPredicted RBP6.13□□□□□ -1.43
RIF1-203ENST00000428287 CHL1O00533 1208 aa6.12□□□□□ -1.43
RIF1-203ENST00000428287 STX6O43752 255 aa6.12□□□□□ -1.43
RIF1-203ENST00000428287 CDC25BP30305 580 aa6.12□□□□□ -1.43
RIF1-203ENST00000428287 C16orf71Q8IYS4 520 aaPredicted RBP6.12□□□□□ -1.43
RIF1-203ENST00000428287 MTMR6Q9Y217 621 aa6.12□□□□□ -1.43
RIF1-203ENST00000428287 MARF1Q9Y4F3 1742 aaKnown RBP6.12□□□□□ -1.43
RIF1-203ENST00000428287 PHACTR3Q96KR7 559 aa6.12□□□□□ -1.43
RIF1-203ENST00000428287 FAM177BA6PVY3 158 aa6.12□□□□□ -1.43
RIF1-203ENST00000428287 PDCP20941 246 aa6.12□□□□□ -1.43
RIF1-203ENST00000428287 NAA30Q147X3 362 aaPredicted RBP6.12□□□□□ -1.43
RIF1-203ENST00000428287 CASC1Q6TDU7 716 aa6.12□□□□□ -1.43
RIF1-203ENST00000428287 NOP2P46087 812 aaKnown RBP6.12□□□□□ -1.43
RIF1-203ENST00000428287 SNRKQ9NRH2 765 aa6.12□□□□□ -1.43
RIF1-203ENST00000428287 SPATA31D1Q6ZQQ2 1576 aa6.12□□□□□ -1.43
RIF1-203ENST00000428287 ZBTB22O15209 634 aa6.12□□□□□ -1.43
RIF1-203ENST00000428287 RPS6KA5O75582 802 aa6.12□□□□□ -1.43
RIF1-203ENST00000428287 PNMA6AP0CW24 399 aaPredicted RBP6.12□□□□□ -1.43
RIF1-203ENST00000428287 LRMPQ12912 555 aa6.12□□□□□ -1.43
RIF1-203ENST00000428287 CCDC112Q8NEF3 446 aa6.12□□□□□ -1.43
RIF1-203ENST00000428287 GDPD2Q9HCC8 539 aa6.12□□□□□ -1.43
RIF1-203ENST00000428287 RGPD2P0DJD1 1756 aa6.12□□□□□ -1.43
RIF1-203ENST00000428287 ZSCAN25Q6NSZ9 544 aa6.12□□□□□ -1.43
RIF1-203ENST00000428287 LRRC8AQ8IWT6 810 aa6.12□□□□□ -1.43
RIF1-203ENST00000428287 OSBPL5Q9H0X9 879 aaPredicted RBP6.12□□□□□ -1.43
RIF1-203ENST00000428287 POLKQ9UBT6 870 aa6.12□□□□□ -1.43
RIF1-203ENST00000428287 TNNT1P13805 278 aa6.12□□□□□ -1.43
RIF1-203ENST00000428287 AFAP1Q8N556 730 aa6.12□□□□□ -1.43
RIF1-203ENST00000428287 FHOD1Q9Y613 1164 aa6.12□□□□□ -1.43
RIF1-203ENST00000428287 MLH3Q9UHC1 1453 aa6.11□□□□□ -1.43
RIF1-203ENST00000428287 SMCHD1A6NHR9 2005 aa6.11□□□□□ -1.43
RIF1-203ENST00000428287 LTN1O94822 1766 aa6.11□□□□□ -1.43
RIF1-203ENST00000428287 SGSM2O43147 1006 aa6.11□□□□□ -1.43
RIF1-203ENST00000428287 TTC6Q86TZ1 520 aa6.11□□□□□ -1.43
RIF1-203ENST00000428287 ZKSCAN7Q9P0L1 754 aaPredicted RBP6.11□□□□□ -1.43
RIF1-203ENST00000428287 DIAPH1O60610 1272 aaKnown RBP6.11□□□□□ -1.43
RIF1-203ENST00000428287 TYRO3Q06418 890 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms