RNA–Protein interactions for RNA: ENST00000424143.5

C9orf3-204, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 1,605 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-204ENST00000424143 FKBP5Q13451 457 aaPredicted RBP18.36■□□□□ 0.53
C9orf3-204ENST00000424143 TAF7Q15545 349 aaPredicted RBP18.36■□□□□ 0.53
C9orf3-204ENST00000424143 USP48Q86UV5 1035 aa18.36■□□□□ 0.53
C9orf3-204ENST00000424143 PRIMPOLQ96LW4 560 aa18.36■□□□□ 0.53
C9orf3-204ENST00000424143 EYA1Q99502 592 aa18.36■□□□□ 0.53
C9orf3-204ENST00000424143 NWD1Q149M9 1564 aa18.36■□□□□ 0.53
C9orf3-204ENST00000424143 UBTFL1P0CB47 393 aaPredicted RBP18.35■□□□□ 0.53
C9orf3-204ENST00000424143 ZSCAN22P10073 491 aaPredicted RBP18.35■□□□□ 0.53
C9orf3-204ENST00000424143 UBE2HP62256 183 aa18.35■□□□□ 0.53
C9orf3-204ENST00000424143 KIF1BPQ96EK5 621 aa18.35■□□□□ 0.53
C9orf3-204ENST00000424143 TM6SF1Q9BZW5 370 aa18.35■□□□□ 0.53
C9orf3-204ENST00000424143 LRRFIP2Q9Y608 721 aaKnown RBP18.35■□□□□ 0.53
C9orf3-204ENST00000424143 TTC41PQ6P2S7 1318 aa18.35■□□□□ 0.53
C9orf3-204ENST00000424143 FOXO3O43524 673 aa18.34■□□□□ 0.53
C9orf3-204ENST00000424143 TPM3P06753 285 aa18.34■□□□□ 0.53
C9orf3-204ENST00000424143 XPCQ01831 940 aaPredicted RBP18.34■□□□□ 0.53
C9orf3-204ENST00000424143 FAM69CQ0P6D2 419 aa18.34■□□□□ 0.53
C9orf3-204ENST00000424143 VSIG10Q8N0Z9 540 aa18.34■□□□□ 0.53
C9orf3-204ENST00000424143 PI4K2BQ8TCG2 481 aa18.34■□□□□ 0.53
C9orf3-204ENST00000424143 RILPL2Q969X0 211 aa18.34■□□□□ 0.53
C9orf3-204ENST00000424143 LIMCH1Q9UPQ0 1083 aa18.34■□□□□ 0.53
C9orf3-204ENST00000424143 ANKARQ7Z5J8 1434 aa18.34■□□□□ 0.53
C9orf3-204ENST00000424143 UQCRHLA0A096LP55 91 aa18.34■□□□□ 0.53
C9orf3-204ENST00000424143 UQCRHP07919 91 aa18.34■□□□□ 0.53
C9orf3-204ENST00000424143 HMGN5P82970 282 aaKnown RBP18.34■□□□□ 0.53
C9orf3-204ENST00000424143 ZSCAN31Q96LW9 406 aaPredicted RBP18.34■□□□□ 0.53
C9orf3-204ENST00000424143 LSG1Q9H089 658 aaKnown RBP18.34■□□□□ 0.53
C9orf3-204ENST00000424143 MIS18AQ9NYP9 233 aa18.34■□□□□ 0.53
C9orf3-204ENST00000424143 CNTROBQ8N137 903 aa18.33■□□□□ 0.52
C9orf3-204ENST00000424143 PIBF1Q8WXW3 757 aa18.33■□□□□ 0.52
C9orf3-204ENST00000424143 ZMYND15Q9H091 742 aa18.33■□□□□ 0.52
C9orf3-204ENST00000424143 MED1Q15648 1581 aaPredicted RBP18.32■□□□□ 0.52
C9orf3-204ENST00000424143 PIK3C2AO00443 1686 aa18.32■□□□□ 0.52
C9orf3-204ENST00000424143 GTF2F1P35269 517 aaKnown RBP eCLIP18.32■□□□□ 0.527e-6■■■■□ 21.3
C9orf3-204ENST00000424143 SPTLC3Q9NUV7 552 aa18.32■□□□□ 0.52
C9orf3-204ENST00000424143 SNX14Q9Y5W7 946 aa18.32■□□□□ 0.52
C9orf3-204ENST00000424143 CHD2O14647 1828 aaKnown RBP18.31■□□□□ 0.52
C9orf3-204ENST00000424143 MTX1Q13505 466 aa18.31■□□□□ 0.52
C9orf3-204ENST00000424143 UNC5CLQ8IV45 518 aa18.31■□□□□ 0.52
C9orf3-204ENST00000424143 MYRIPQ8NFW9 859 aa18.31■□□□□ 0.52
C9orf3-204ENST00000424143 RHPN1Q8TCX5 695 aa18.31■□□□□ 0.52
C9orf3-204ENST00000424143 ESF1Q9H501 851 aaKnown RBP18.31■□□□□ 0.52
C9orf3-204ENST00000424143 SH2B1Q9NRF2 756 aaPredicted RBP18.31■□□□□ 0.52
C9orf3-204ENST00000424143 AMPHP49418 695 aa18.31■□□□□ 0.52
C9orf3-204ENST00000424143 RUFY2Q8WXA3 655 aa18.31■□□□□ 0.52
C9orf3-204ENST00000424143 HDAC5Q9UQL6 1122 aa18.31■□□□□ 0.52
C9orf3-204ENST00000424143 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP18.31■□□□□ 0.52
C9orf3-204ENST00000424143 TCHHQ07283 1943 aa18.3■□□□□ 0.52
C9orf3-204ENST00000424143 CEMIPQ8WUJ3 1361 aa18.3■□□□□ 0.52
C9orf3-204ENST00000424143 STX6O43752 255 aa18.3■□□□□ 0.52
C9orf3-204ENST00000424143 GADD45BO75293 160 aaPredicted RBP18.3■□□□□ 0.52
C9orf3-204ENST00000424143 PTMAP06454 111 aaKnown RBP18.3■□□□□ 0.52
C9orf3-204ENST00000424143 TBX22Q9Y458 520 aa18.3■□□□□ 0.52
C9orf3-204ENST00000424143 GLRX3O76003 335 aaKnown RBP18.29■□□□□ 0.52
C9orf3-204ENST00000424143 F13A1P00488 732 aa18.29■□□□□ 0.52
C9orf3-204ENST00000424143 VPS53Q5VIR6 699 aa18.29■□□□□ 0.52
C9orf3-204ENST00000424143 IL17REQ8NFR9 667 aa18.29■□□□□ 0.52
C9orf3-204ENST00000424143 CHAMP1Q96JM3 812 aa18.29■□□□□ 0.52
C9orf3-204ENST00000424143 FUCA2Q9BTY2 467 aa18.29■□□□□ 0.52
C9orf3-204ENST00000424143 SLIT1O75093 1534 aa18.29■□□□□ 0.52
C9orf3-204ENST00000424143 MARF1Q9Y4F3 1742 aaKnown RBP18.29■□□□□ 0.52
C9orf3-204ENST00000424143 ARHGAP23Q9P227 1491 aa18.29■□□□□ 0.52
C9orf3-204ENST00000424143 TSHZ3Q63HK5 1081 aa18.28■□□□□ 0.52
C9orf3-204ENST00000424143 PPP1R42Q7Z4L9 355 aa18.28■□□□□ 0.52
C9orf3-204ENST00000424143 RNF214Q8ND24 703 aa18.28■□□□□ 0.52
C9orf3-204ENST00000424143 UPF3BQ9BZI7 483 aaKnown RBP18.28■□□□□ 0.52
C9orf3-204ENST00000424143 USP25Q9UHP3 1055 aa18.28■□□□□ 0.52
C9orf3-204ENST00000424143 CCDC171Q6TFL3 1326 aa18.28■□□□□ 0.52
C9orf3-204ENST00000424143 KDM4AO75164 1064 aa18.27■□□□□ 0.52
C9orf3-204ENST00000424143 FOXD4L5Q5VV16 416 aaPredicted RBP18.27■□□□□ 0.52
C9orf3-204ENST00000424143 FOXD4L4Q8WXT5 416 aaPredicted RBP18.27■□□□□ 0.52
C9orf3-204ENST00000424143 ALDH8A1Q9H2A2 487 aaPredicted RBP18.27■□□□□ 0.52
C9orf3-204ENST00000424143 SNRKQ9NRH2 765 aa18.27■□□□□ 0.52
C9orf3-204ENST00000424143 KDM3BQ7LBC6 1761 aa18.27■□□□□ 0.52
C9orf3-204ENST00000424143 ADGRL3Q9HAR2 1447 aa18.27■□□□□ 0.51
C9orf3-204ENST00000424143 SURF6O75683 361 aaKnown RBP18.27■□□□□ 0.51
C9orf3-204ENST00000424143 SYT1P21579 422 aa18.27■□□□□ 0.51
C9orf3-204ENST00000424143 RUFY3Q7L099 469 aa18.27■□□□□ 0.51
C9orf3-204ENST00000424143 PKNOX2Q96KN3 472 aa18.27■□□□□ 0.51
C9orf3-204ENST00000424143 SMC3Q9UQE7 1217 aa18.27■□□□□ 0.51
C9orf3-204ENST00000424143 AK2P54819 239 aa18.26■□□□□ 0.51
C9orf3-204ENST00000424143 ZSWIM6Q9HCJ5 1215 aa18.26■□□□□ 0.51
C9orf3-204ENST00000424143 TSPOAP1O95153 1857 aa18.26■□□□□ 0.51
C9orf3-204ENST00000424143 HOXC9P31274 260 aa18.25■□□□□ 0.51
C9orf3-204ENST00000424143 NOLC1Q14978 699 aaKnown RBP eCLIP18.25■□□□□ 0.51
C9orf3-204ENST00000424143 HDGFL1Q5TGJ6 251 aa18.25■□□□□ 0.51
C9orf3-204ENST00000424143 ERC1Q8IUD2 1116 aa18.25■□□□□ 0.51
C9orf3-204ENST00000424143 HYPKQ9NX55 129 aa18.25■□□□□ 0.51
C9orf3-204ENST00000424143 HIP1O00291 1037 aa18.24■□□□□ 0.51
C9orf3-204ENST00000424143 ADCY5O95622 1261 aa18.24■□□□□ 0.51
C9orf3-204ENST00000424143 BEND3Q5T5X7 828 aa18.24■□□□□ 0.51
C9orf3-204ENST00000424143 IL25Q9H293 177 aa18.24■□□□□ 0.51
C9orf3-204ENST00000424143 ELP1O95163 1332 aa18.24■□□□□ 0.51
C9orf3-204ENST00000424143 OVOS2A0A0G2JMS6 1433 aa18.24■□□□□ 0.51
C9orf3-204ENST00000424143 ALDH1L1O75891 902 aa18.23■□□□□ 0.51
C9orf3-204ENST00000424143 SMAP1Q8IYB5 467 aaPredicted RBP18.23■□□□□ 0.51
C9orf3-204ENST00000424143 CNPY2Q9Y2B0 182 aa18.23■□□□□ 0.51
C9orf3-204ENST00000424143 NUTM1Q86Y26 1132 aa18.23■□□□□ 0.51
C9orf3-204ENST00000424143 RASEFQ8IZ41 740 aa18.23■□□□□ 0.51
C9orf3-204ENST00000424143 FAM13BQ9NYF5 915 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms