RNA–Protein interactions for RNA: ENST00000414411.3

DDB1-202, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 2

Gene DDB1, Length 1,904 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-202ENST00000414411 TSPYL6Q8N831 410 aa12.78□□□□□ -0.36
DDB1-202ENST00000414411 SMARCC1Q92922 1105 aaPredicted RBP12.78□□□□□ -0.36
DDB1-202ENST00000414411 RNF39Q9H2S5 420 aa12.78□□□□□ -0.36
DDB1-202ENST00000414411 GIGYF1O75420 1035 aaPredicted RBP12.78□□□□□ -0.36
DDB1-202ENST00000414411 FMNL2Q96PY5 1086 aa12.78□□□□□ -0.36
DDB1-202ENST00000414411 SLC4A9Q96Q91 983 aa12.78□□□□□ -0.36
DDB1-202ENST00000414411 PTCD1O75127 700 aaKnown RBP12.77□□□□□ -0.37
DDB1-202ENST00000414411 VAMP4O75379 141 aa12.77□□□□□ -0.37
DDB1-202ENST00000414411 VSIG10Q8N0Z9 540 aa12.76□□□□□ -0.37
DDB1-202ENST00000414411 ANP32EQ9BTT0 268 aa12.76□□□□□ -0.37
DDB1-202ENST00000414411 PALLDQ8WX93 1383 aa12.76□□□□□ -0.37
DDB1-202ENST00000414411 SOS1Q07889 1333 aaPredicted RBP12.76□□□□□ -0.37
DDB1-202ENST00000414411 ELL2O00472 640 aaPredicted RBP12.76□□□□□ -0.37
DDB1-202ENST00000414411 HOXB7P09629 217 aa12.76□□□□□ -0.37
DDB1-202ENST00000414411 CT47B1P0C2W7 299 aaPredicted RBP12.76□□□□□ -0.37
DDB1-202ENST00000414411 TWISTNBQ3B726 338 aaPredicted RBP12.76□□□□□ -0.37
DDB1-202ENST00000414411 LOC102724428A0A0B4J2F2 783 aa12.75□□□□□ -0.37
DDB1-202ENST00000414411 PRAMEF22A3QJZ6 481 aa12.75□□□□□ -0.37
DDB1-202ENST00000414411 PLSCR1O15162 318 aa12.75□□□□□ -0.37
DDB1-202ENST00000414411 SNRPA1P09661 255 aaKnown RBP12.75□□□□□ -0.37
DDB1-202ENST00000414411 SIK1P57059 783 aa12.75□□□□□ -0.37
DDB1-202ENST00000414411 LY75O60449 1722 aa12.75□□□□□ -0.37
DDB1-202ENST00000414411 TNS1Q9HBL0 1735 aaKnown RBP12.75□□□□□ -0.37
DDB1-202ENST00000414411 ZNF831Q5JPB2 1677 aa12.75□□□□□ -0.37
DDB1-202ENST00000414411 RBM42Q9BTD8 480 aaKnown RBP12.74□□□□□ -0.37
DDB1-202ENST00000414411 PLIN1O60240 522 aa12.74□□□□□ -0.37
DDB1-202ENST00000414411 APBA3O96018 575 aa12.74□□□□□ -0.37
DDB1-202ENST00000414411 PROM2Q8N271 834 aa12.74□□□□□ -0.37
DDB1-202ENST00000414411 USP16Q9Y5T5 823 aa12.74□□□□□ -0.37
DDB1-202ENST00000414411 ZNF428Q96B54 188 aa12.73□□□□□ -0.37
DDB1-202ENST00000414411 TEX13AQ9BXU3 409 aaPredicted RBP12.73□□□□□ -0.37
DDB1-202ENST00000414411 C5P01031 1676 aa12.73□□□□□ -0.37
DDB1-202ENST00000414411 ILDR2Q71H61 639 aa12.72□□□□□ -0.37
DDB1-202ENST00000414411 CICQ96RK0 1608 aaPredicted RBP12.72□□□□□ -0.37
DDB1-202ENST00000414411 ATP6V1AP38606 617 aa12.72□□□□□ -0.37
DDB1-202ENST00000414411 ITPK1Q13572 414 aa12.72□□□□□ -0.37
DDB1-202ENST00000414411 CCDC125Q86Z20 511 aa12.72□□□□□ -0.37
DDB1-202ENST00000414411 DNAJC10Q8IXB1 793 aa12.72□□□□□ -0.37
DDB1-202ENST00000414411 CRBNQ96SW2 442 aa12.71□□□□□ -0.37
DDB1-202ENST00000414411 LRRC4BQ9NT99 713 aa12.71□□□□□ -0.37
DDB1-202ENST00000414411 TJP1Q07157 1748 aa12.71□□□□□ -0.37
DDB1-202ENST00000414411 CYP19A1P11511 503 aaPredicted RBP12.7□□□□□ -0.38
DDB1-202ENST00000414411 RARSP54136 660 aaKnown RBP12.7□□□□□ -0.38
DDB1-202ENST00000414411 KCNQ4P56696 695 aa12.7□□□□□ -0.38
DDB1-202ENST00000414411 SLC27A3Q5K4L6 730 aa12.7□□□□□ -0.38
DDB1-202ENST00000414411 HDGFL1Q5TGJ6 251 aa12.7□□□□□ -0.38
DDB1-202ENST00000414411 CACNA1FO60840 1977 aa12.7□□□□□ -0.38
DDB1-202ENST00000414411 RGPD3A6NKT7 1758 aaPredicted RBP12.7□□□□□ -0.38
DDB1-202ENST00000414411 RGPD4Q7Z3J3 1758 aa12.7□□□□□ -0.38
DDB1-202ENST00000414411 EIF2S2P20042 333 aaKnown RBP12.7□□□□□ -0.38
DDB1-202ENST00000414411 POLA2Q14181 598 aa12.7□□□□□ -0.38
DDB1-202ENST00000414411 PDIA6Q15084 440 aa12.7□□□□□ -0.38
DDB1-202ENST00000414411 TXNRD1Q16881 649 aa12.7□□□□□ -0.38
DDB1-202ENST00000414411 ALDH1L2Q3SY69 923 aa12.7□□□□□ -0.38
DDB1-202ENST00000414411 SSH1Q8WYL5 1049 aa12.7□□□□□ -0.38
DDB1-202ENST00000414411 CAMKK2Q96RR4 588 aa12.7□□□□□ -0.38
DDB1-202ENST00000414411 CHMP4AQ9BY43 222 aa12.7□□□□□ -0.38
DDB1-202ENST00000414411 CCNL1Q9UK58 526 aaPredicted RBP12.7□□□□□ -0.38
DDB1-202ENST00000414411 MYH14Q7Z406 1995 aaKnown RBP12.7□□□□□ -0.38
DDB1-202ENST00000414411 TAF1LQ8IZX4 1826 aa12.69□□□□□ -0.38
DDB1-202ENST00000414411 SPDYE4A6NLX3 237 aa12.69□□□□□ -0.38
DDB1-202ENST00000414411 STARD3NLO95772 234 aa12.69□□□□□ -0.38
DDB1-202ENST00000414411 CCDC30Q5VVM6 783 aa12.69□□□□□ -0.38
DDB1-202ENST00000414411 LAMB4A4D0S4 1761 aa12.69□□□□□ -0.38
DDB1-202ENST00000414411 COL5A3P25940 1745 aaPredicted RBP12.68□□□□□ -0.38
DDB1-202ENST00000414411 NBPF26B4DH59 902 aa12.68□□□□□ -0.38
DDB1-202ENST00000414411 CAPN15O75808 1086 aa12.68□□□□□ -0.38
DDB1-202ENST00000414411 BRPF1P55201 1214 aaPredicted RBP12.68□□□□□ -0.38
DDB1-202ENST00000414411 C20orf194Q5TEA3 1177 aa12.68□□□□□ -0.38
DDB1-202ENST00000414411 NBPF14Q5TI25 921 aa12.68□□□□□ -0.38
DDB1-202ENST00000414411 NBPF10Q6P3W6 841 aaKnown RBP12.68□□□□□ -0.38
DDB1-202ENST00000414411 NBPF15Q8N660 670 aa12.68□□□□□ -0.38
DDB1-202ENST00000414411 LINC00116Q8NCU8 138 aa12.68□□□□□ -0.38
DDB1-202ENST00000414411 NECTIN2Q92692 538 aa12.68□□□□□ -0.38
DDB1-202ENST00000414411 UPF1Q92900 1129 aaKnown RBP eCLIP12.68□□□□□ -0.38
DDB1-202ENST00000414411 A1BGP04217 495 aa12.68□□□□□ -0.38
DDB1-202ENST00000414411 EN1Q05925 392 aaPredicted RBP12.68□□□□□ -0.38
DDB1-202ENST00000414411 INTS5Q6P9B9 1019 aaKnown RBP12.68□□□□□ -0.38
DDB1-202ENST00000414411 LRP10Q7Z4F1 713 aa12.68□□□□□ -0.38
DDB1-202ENST00000414411 ERBB4Q15303 1308 aa12.68□□□□□ -0.38
DDB1-202ENST00000414411 TCERG1O14776 1098 aaKnown RBP12.67□□□□□ -0.38
DDB1-202ENST00000414411 BCAR3O75815 825 aa12.67□□□□□ -0.38
DDB1-202ENST00000414411 SF3B2Q13435 895 aaKnown RBP12.67□□□□□ -0.38
DDB1-202ENST00000414411 MRPL50Q8N5N7 158 aaKnown RBP12.67□□□□□ -0.38
DDB1-202ENST00000414411 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.67□□□□□ -0.38
DDB1-202ENST00000414411 DDX21Q9NR30 783 aaKnown RBP eCLIP12.67□□□□□ -0.38
DDB1-202ENST00000414411 DBF4Q9UBU7 674 aaPredicted RBP12.67□□□□□ -0.38
DDB1-202ENST00000414411 CRKLP46109 303 aaKnown RBP12.66□□□□□ -0.38
DDB1-202ENST00000414411 BAG6P46379 1132 aa12.66□□□□□ -0.38
DDB1-202ENST00000414411 PROSER3Q2NL68 480 aa12.66□□□□□ -0.38
DDB1-202ENST00000414411 RC3H1Q5TC82 1133 aaKnown RBP12.66□□□□□ -0.38
DDB1-202ENST00000414411 DEFB132Q7Z7B7 95 aa12.66□□□□□ -0.38
DDB1-202ENST00000414411 CHPF2Q9P2E5 772 aa12.66□□□□□ -0.38
DDB1-202ENST00000414411 CNTNAP4Q9C0A0 1308 aa12.66□□□□□ -0.38
DDB1-202ENST00000414411 EZH2Q15910 746 aaKnown RBP12.66□□□□□ -0.38
DDB1-202ENST00000414411 BCL2L13Q9BXK5 485 aa12.66□□□□□ -0.38
DDB1-202ENST00000414411 RREB1Q92766 1687 aa12.65□□□□□ -0.38
DDB1-202ENST00000414411 HMGB2P26583 209 aaKnown RBP12.65□□□□□ -0.38
DDB1-202ENST00000414411 STK31Q9BXU1 1019 aa12.65□□□□□ -0.38
DDB1-202ENST00000414411 SMC4Q9NTJ3 1288 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms