RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 SURF6O75683 361 aaKnown RBP15.39■□□□□ 0.05
SHMT1-205ENST00000395684 PI4K2BQ8TCG2 481 aa15.39■□□□□ 0.05
SHMT1-205ENST00000395684 USP48Q86UV5 1035 aa15.39■□□□□ 0.05
SHMT1-205ENST00000395684 POLA2Q14181 598 aa15.38■□□□□ 0.05
SHMT1-205ENST00000395684 HDGFL1Q5TGJ6 251 aa15.38■□□□□ 0.05
SHMT1-205ENST00000395684 MAP3K5Q99683 1374 aa15.38■□□□□ 0.05
SHMT1-205ENST00000395684 EPB41L2O43491 1005 aaKnown RBP15.38■□□□□ 0.05
SHMT1-205ENST00000395684 PLEKHG5O94827 1062 aa15.38■□□□□ 0.05
SHMT1-205ENST00000395684 RHPN1Q8TCX5 695 aa15.38■□□□□ 0.05
SHMT1-205ENST00000395684 LTV1Q96GA3 475 aaPredicted RBP15.38■□□□□ 0.05
SHMT1-205ENST00000395684 TSPY26PQ9H489 355 aa15.38■□□□□ 0.05
SHMT1-205ENST00000395684 R3HCC1Q9Y3T6 440 aaKnown RBP15.38■□□□□ 0.05
SHMT1-205ENST00000395684 RAB11FIP3O75154 756 aa15.37■□□□□ 0.05
SHMT1-205ENST00000395684 TERF1P54274 439 aa15.37■□□□□ 0.05
SHMT1-205ENST00000395684 WDR33Q9C0J8 1336 aaKnown RBP15.37■□□□□ 0.05
SHMT1-205ENST00000395684 PIK3C2AO00443 1686 aa15.37■□□□□ 0.05
SHMT1-205ENST00000395684 NWD1Q149M9 1564 aa15.37■□□□□ 0.05
SHMT1-205ENST00000395684 PXDNLA1KZ92 1463 aa15.37■□□□□ 0.05
SHMT1-205ENST00000395684 SGSM2O43147 1006 aa15.37■□□□□ 0.05
SHMT1-205ENST00000395684 NBPF7P0C2Y1 421 aaPredicted RBP15.37■□□□□ 0.05
SHMT1-205ENST00000395684 BABAM1Q9NWV8 329 aa15.37■□□□□ 0.05
SHMT1-205ENST00000395684 GLIPR1L2Q4G1C9 344 aa15.36■□□□□ 0.05
SHMT1-205ENST00000395684 CCDC39Q9UFE4 941 aa15.36■□□□□ 0.05
SHMT1-205ENST00000395684 SNX14Q9Y5W7 946 aa15.36■□□□□ 0.05
SHMT1-205ENST00000395684 RAD50Q92878 1312 aa15.36■□□□□ 0.05
SHMT1-205ENST00000395684 RPAP1Q9BWH6 1393 aaPredicted RBP15.36■□□□□ 0.05
SHMT1-205ENST00000395684 SRGAP3O43295 1099 aa15.36■□□□□ 0.05
SHMT1-205ENST00000395684 CEBPAP49715 358 aaPredicted RBP15.36■□□□□ 0.05
SHMT1-205ENST00000395684 RASEFQ8IZ41 740 aa15.36■□□□□ 0.05
SHMT1-205ENST00000395684 MCM5P33992 734 aa15.35■□□□□ 0.05
SHMT1-205ENST00000395684 USHBP1Q8N6Y0 703 aa15.35■□□□□ 0.05
SHMT1-205ENST00000395684 SYAP1Q96A49 352 aaPredicted RBP15.35■□□□□ 0.05
SHMT1-205ENST00000395684 TTC14Q96N46 770 aa15.35■□□□□ 0.05
SHMT1-205ENST00000395684 LARP6Q9BRS8 491 aaKnown RBP15.35■□□□□ 0.05
SHMT1-205ENST00000395684 LSG1Q9H089 658 aaKnown RBP15.35■□□□□ 0.05
SHMT1-205ENST00000395684 EIF2S2P20042 333 aaKnown RBP15.35■□□□□ 0.05
SHMT1-205ENST00000395684 RGPD8O14715 1765 aaPredicted RBP15.35■□□□□ 0.05
SHMT1-205ENST00000395684 EID1Q9Y6B2 187 aa15.34■□□□□ 0.05
SHMT1-205ENST00000395684 AK2P54819 239 aa15.34■□□□□ 0.05
SHMT1-205ENST00000395684 KIF1BPQ96EK5 621 aa15.34■□□□□ 0.05
SHMT1-205ENST00000395684 RUFY3Q7L099 469 aa15.33■□□□□ 0.05
SHMT1-205ENST00000395684 PDCL3Q9H2J4 239 aa15.33■□□□□ 0.05
SHMT1-205ENST00000395684 TBX22Q9Y458 520 aa15.33■□□□□ 0.05
SHMT1-205ENST00000395684 DIP2AQ14689 1571 aa15.33■□□□□ 0.04
SHMT1-205ENST00000395684 CACNA1FO60840 1977 aa15.33■□□□□ 0.04
SHMT1-205ENST00000395684 CWC27Q6UX04 472 aaKnown RBP15.33■□□□□ 0.04
SHMT1-205ENST00000395684 CNPY2Q9Y2B0 182 aa15.33■□□□□ 0.04
SHMT1-205ENST00000395684 BEND3Q5T5X7 828 aa15.32■□□□□ 0.04
SHMT1-205ENST00000395684 TMEM87AQ8NBN3 555 aa15.32■□□□□ 0.04
SHMT1-205ENST00000395684 SPG7Q9UQ90 795 aa15.32■□□□□ 0.04
SHMT1-205ENST00000395684 N4BP2Q86UW6 1770 aaPredicted RBP15.32■□□□□ 0.04
SHMT1-205ENST00000395684 PI4KAP2A4QPH2 592 aa15.32■□□□□ 0.04
SHMT1-205ENST00000395684 RBM10P98175 930 aaKnown RBP15.32■□□□□ 0.04
SHMT1-205ENST00000395684 CNTROBQ8N137 903 aa15.32■□□□□ 0.04
SHMT1-205ENST00000395684 PI4KAP1Q8N8J0 262 aa15.32■□□□□ 0.04
SHMT1-205ENST00000395684 ABTB2Q8N961 1025 aa15.32■□□□□ 0.04
SHMT1-205ENST00000395684 LGR6Q9HBX8 967 aa15.32■□□□□ 0.04
SHMT1-205ENST00000395684 CHPF2Q9P2E5 772 aa15.32■□□□□ 0.04
SHMT1-205ENST00000395684 PHF14O94880 888 aa15.31■□□□□ 0.04
SHMT1-205ENST00000395684 CPA1P15085 419 aa15.31■□□□□ 0.04
SHMT1-205ENST00000395684 EIF4A1P60842 406 aaKnown RBP15.31■□□□□ 0.04
SHMT1-205ENST00000395684 PLPPR3Q6T4P5 718 aa15.31■□□□□ 0.04
SHMT1-205ENST00000395684 ZSCAN22P10073 491 aaPredicted RBP15.31■□□□□ 0.04
SHMT1-205ENST00000395684 SYT1P21579 422 aa15.31■□□□□ 0.04
SHMT1-205ENST00000395684 LIMCH1Q9UPQ0 1083 aa15.31■□□□□ 0.04
SHMT1-205ENST00000395684 CEMIPQ8WUJ3 1361 aa15.31■□□□□ 0.04
SHMT1-205ENST00000395684 KCNQ3O43525 872 aa15.3■□□□□ 0.04
SHMT1-205ENST00000395684 ANXA1P04083 346 aa15.3■□□□□ 0.04
SHMT1-205ENST00000395684 CSPP1Q1MSJ5 1256 aa15.3■□□□□ 0.04
SHMT1-205ENST00000395684 TPRNQ4KMQ1 711 aa15.3■□□□□ 0.04
SHMT1-205ENST00000395684 VSIG10Q8N0Z9 540 aa15.3■□□□□ 0.04
SHMT1-205ENST00000395684 DNAAF4Q8WXU2 420 aa15.3■□□□□ 0.04
SHMT1-205ENST00000395684 STX6O43752 255 aa15.3■□□□□ 0.04
SHMT1-205ENST00000395684 DTNBO60941 627 aa15.3■□□□□ 0.04
SHMT1-205ENST00000395684 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.3■□□□□ 0.044e-6■■■■□ 19.9
SHMT1-205ENST00000395684 TCHHQ07283 1943 aa15.3■□□□□ 0.04
SHMT1-205ENST00000395684 PTMAP06454 111 aaKnown RBP15.3■□□□□ 0.04
SHMT1-205ENST00000395684 UQCRHLA0A096LP55 91 aa15.29■□□□□ 0.04
SHMT1-205ENST00000395684 LARGE1O95461 756 aa15.29■□□□□ 0.04
SHMT1-205ENST00000395684 UQCRHP07919 91 aa15.29■□□□□ 0.04
SHMT1-205ENST00000395684 CASTP20810 708 aaKnown RBP15.29■□□□□ 0.04
SHMT1-205ENST00000395684 CCDC183Q5T5S1 534 aa15.29■□□□□ 0.04
SHMT1-205ENST00000395684 MPNDQ8N594 471 aa15.29■□□□□ 0.04
SHMT1-205ENST00000395684 HYPKQ9NX55 129 aa15.29■□□□□ 0.04
SHMT1-205ENST00000395684 MARF1Q9Y4F3 1742 aaKnown RBP15.28■□□□□ 0.04
SHMT1-205ENST00000395684 USP42Q9H9J4 1324 aaKnown RBP15.28■□□□□ 0.04
SHMT1-205ENST00000395684 PTH1RQ03431 593 aa15.28■□□□□ 0.04
SHMT1-205ENST00000395684 FAM184AQ8NB25 1140 aa15.28■□□□□ 0.04
SHMT1-205ENST00000395684 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.28■□□□□ 0.04
SHMT1-205ENST00000395684 F13A1P00488 732 aa15.28■□□□□ 0.04
SHMT1-205ENST00000395684 ADCK5Q3MIX3 580 aa15.28■□□□□ 0.04
SHMT1-205ENST00000395684 NBPF6Q5VWK0 638 aa15.28■□□□□ 0.04
SHMT1-205ENST00000395684 NBPF4Q96M43 638 aa15.28■□□□□ 0.04
SHMT1-205ENST00000395684 USP25Q9UHP3 1055 aa15.28■□□□□ 0.04
SHMT1-205ENST00000395684 SMC3Q9UQE7 1217 aa15.28■□□□□ 0.04
SHMT1-205ENST00000395684 GLRX3O76003 335 aaKnown RBP15.27■□□□□ 0.04
SHMT1-205ENST00000395684 UBE2HP62256 183 aa15.27■□□□□ 0.04
SHMT1-205ENST00000395684 UVSSAQ2YD98 709 aa15.27■□□□□ 0.04
SHMT1-205ENST00000395684 FAM13BQ9NYF5 915 aa15.27■□□□□ 0.04
SHMT1-205ENST00000395684 ADCY9O60503 1353 aa15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms