RNA–Protein interactions for RNA: ENST00000391813.5

SHANK1-203, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 1 (best) BASIC

Gene SHANK1, Length 4,785 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-203ENST00000391813 EPS15P42566 896 aa23.03■■□□□ 1.28
SHANK1-203ENST00000391813 NME9Q86XW9 330 aa23.03■■□□□ 1.28
SHANK1-203ENST00000391813 GIMAP7Q8NHV1 300 aa23.03■■□□□ 1.28
SHANK1-203ENST00000391813 POTEB2H3BUK9 544 aa23.03■■□□□ 1.28
SHANK1-203ENST00000391813 CWC27Q6UX04 472 aaKnown RBP23.03■■□□□ 1.28
SHANK1-203ENST00000391813 DNAJC2Q99543 621 aaKnown RBP23.03■■□□□ 1.28
SHANK1-203ENST00000391813 GNAT3A8MTJ3 354 aa23.02■■□□□ 1.28
SHANK1-203ENST00000391813 CCDC171Q6TFL3 1326 aa23.02■■□□□ 1.28
SHANK1-203ENST00000391813 TRIM27P14373 513 aa23.02■■□□□ 1.28
SHANK1-203ENST00000391813 RBM25P49756 843 aaKnown RBP23.02■■□□□ 1.28
SHANK1-203ENST00000391813 FERMT3Q86UX7 667 aa23.02■■□□□ 1.28
SHANK1-203ENST00000391813 C19orf44Q9H6X5 657 aa23.02■■□□□ 1.28
SHANK1-203ENST00000391813 STIM1Q13586 685 aa23.02■■□□□ 1.28
SHANK1-203ENST00000391813 CCDC83Q8IWF9 413 aa23.02■■□□□ 1.28
SHANK1-203ENST00000391813 TTC21AQ8NDW8 1320 aa23.02■■□□□ 1.28
SHANK1-203ENST00000391813 SMC5Q8IY18 1101 aa23.02■■□□□ 1.28
SHANK1-203ENST00000391813 ATP2B1P20020 1258 aa23.01■■□□□ 1.27
SHANK1-203ENST00000391813 CCDC148Q8NFR7 591 aa23.01■■□□□ 1.27
SHANK1-203ENST00000391813 TTC21BQ7Z4L5 1316 aa23.01■■□□□ 1.27
SHANK1-203ENST00000391813 GOLGA6L9A6NEM1 432 aa23.01■■□□□ 1.27
SHANK1-203ENST00000391813 POLR3GO15318 223 aaPredicted RBP23.01■■□□□ 1.27
SHANK1-203ENST00000391813 CDKL5O76039 1030 aa23.01■■□□□ 1.27
SHANK1-203ENST00000391813 STARD3NLO95772 234 aa23.01■■□□□ 1.27
SHANK1-203ENST00000391813 RRAGDQ9NQL2 400 aaPredicted RBP23.01■■□□□ 1.27
SHANK1-203ENST00000391813 GLRX3O76003 335 aaKnown RBP23■■□□□ 1.27
SHANK1-203ENST00000391813 TRIM22Q8IYM9 498 aa23■■□□□ 1.27
SHANK1-203ENST00000391813 UHRF1BP1Q6BDS2 1440 aa23■■□□□ 1.27
SHANK1-203ENST00000391813 RBM27Q9P2N5 1060 aaKnown RBP23■■□□□ 1.27
SHANK1-203ENST00000391813 RAB3GAP1Q15042 981 aa23■■□□□ 1.27
SHANK1-203ENST00000391813 CEP135Q66GS9 1140 aa23■■□□□ 1.27
SHANK1-203ENST00000391813 KIF5CO60282 957 aa22.99■■□□□ 1.27
SHANK1-203ENST00000391813 TBC1D2BQ9UPU7 963 aa22.99■■□□□ 1.27
SHANK1-203ENST00000391813 BTBD11A6QL63 1104 aa22.99■■□□□ 1.27
SHANK1-203ENST00000391813 SRGAP3O43295 1099 aa22.99■■□□□ 1.27
SHANK1-203ENST00000391813 ZNF165P49910 485 aa22.99■■□□□ 1.27
SHANK1-203ENST00000391813 FEZ1Q99689 392 aa22.99■■□□□ 1.27
SHANK1-203ENST00000391813 ACEP12821 1306 aa22.99■■□□□ 1.27
SHANK1-203ENST00000391813 RAB11FIP3O75154 756 aa22.98■■□□□ 1.27
SHANK1-203ENST00000391813 CT47A1Q5JQC4 288 aaPredicted RBP22.98■■□□□ 1.27
SHANK1-203ENST00000391813 CASQ1P31415 396 aa22.98■■□□□ 1.27
SHANK1-203ENST00000391813 HCLS1P14317 486 aaPredicted RBP22.98■■□□□ 1.27
SHANK1-203ENST00000391813 BBXQ8WY36 941 aaPredicted RBP22.98■■□□□ 1.27
SHANK1-203ENST00000391813 KIF1BPQ96EK5 621 aa22.98■■□□□ 1.27
SHANK1-203ENST00000391813 PUS7Q96PZ0 661 aaKnown RBP22.98■■□□□ 1.27
SHANK1-203ENST00000391813 STX6O43752 255 aa22.98■■□□□ 1.27
SHANK1-203ENST00000391813 EXOC6BQ9Y2D4 811 aa22.97■■□□□ 1.27
SHANK1-203ENST00000391813 EXOC5O00471 708 aa22.97■■□□□ 1.27
SHANK1-203ENST00000391813 SNW1Q13573 536 aaKnown RBP22.97■■□□□ 1.27
SHANK1-203ENST00000391813 PTPRKQ15262 1439 aa22.97■■□□□ 1.27
SHANK1-203ENST00000391813 IL1RAPL2Q9NP60 686 aa22.97■■□□□ 1.27
SHANK1-203ENST00000391813 TMOD3Q9NYL9 352 aa22.97■■□□□ 1.27
SHANK1-203ENST00000391813 TUBB4AP04350 444 aa22.97■■□□□ 1.27
SHANK1-203ENST00000391813 TOP1P11387 765 aaKnown RBP22.97■■□□□ 1.27
SHANK1-203ENST00000391813 KIF20AO95235 890 aa22.96■■□□□ 1.27
SHANK1-203ENST00000391813 CTNNA3Q9UI47 895 aa22.96■■□□□ 1.27
SHANK1-203ENST00000391813 DDX11Q96FC9 970 aa22.96■■□□□ 1.27
SHANK1-203ENST00000391813 TRMT1Q9NXH9 659 aaKnown RBP22.96■■□□□ 1.27
SHANK1-203ENST00000391813 MAPKBP1O60336 1514 aa22.95■■□□□ 1.27
SHANK1-203ENST00000391813 FAM193AP78312 1265 aa22.95■■□□□ 1.26
SHANK1-203ENST00000391813 ZRSR2Q15696 482 aaKnown RBP22.95■■□□□ 1.26
SHANK1-203ENST00000391813 KIF4BQ2VIQ3 1234 aa22.95■■□□□ 1.26
SHANK1-203ENST00000391813 TRERF1Q96PN7 1200 aa22.95■■□□□ 1.26
SHANK1-203ENST00000391813 MAP4K4O95819 1239 aaPredicted RBP22.95■■□□□ 1.26
SHANK1-203ENST00000391813 NUCB1Q02818 461 aa22.95■■□□□ 1.26
SHANK1-203ENST00000391813 LRRFIP2Q9Y608 721 aaKnown RBP22.95■■□□□ 1.26
SHANK1-203ENST00000391813 CKAP2LQ8IYA6 745 aa22.94■■□□□ 1.26
SHANK1-203ENST00000391813 GDPD2Q9HCC8 539 aa22.94■■□□□ 1.26
SHANK1-203ENST00000391813 STX1AQ16623 288 aa22.94■■□□□ 1.26
SHANK1-203ENST00000391813 HSPA2P54652 639 aa22.94■■□□□ 1.26
SHANK1-203ENST00000391813 HSP90AB2PQ58FF8 381 aa22.94■■□□□ 1.26
SHANK1-203ENST00000391813 ATP7AQ04656 1500 aa22.94■■□□□ 1.26
SHANK1-203ENST00000391813 AACSQ86V21 672 aa22.93■■□□□ 1.26
SHANK1-203ENST00000391813 CCDC150Q8NCX0 1101 aa22.93■■□□□ 1.26
SHANK1-203ENST00000391813 NOL7Q9UMY1 257 aaKnown RBP22.93■■□□□ 1.26
SHANK1-203ENST00000391813 MICALCLQ6ZW33 695 aa22.93■■□□□ 1.26
SHANK1-203ENST00000391813 NCBP3Q53F19 620 aaKnown RBP22.93■■□□□ 1.26
SHANK1-203ENST00000391813 ODF2Q5BJF6 829 aa22.93■■□□□ 1.26
SHANK1-203ENST00000391813 CFAP43Q8NDM7 1665 aa22.93■■□□□ 1.26
SHANK1-203ENST00000391813 CENPHQ9H3R5 247 aa22.93■■□□□ 1.26
SHANK1-203ENST00000391813 FAM200AQ8TCP9 573 aa22.92■■□□□ 1.26
SHANK1-203ENST00000391813 INCENPQ9NQS7 918 aa22.92■■□□□ 1.26
SHANK1-203ENST00000391813 PCDHB15Q9Y5E8 787 aa22.92■■□□□ 1.26
SHANK1-203ENST00000391813 FAM177BA6PVY3 158 aa22.92■■□□□ 1.26
SHANK1-203ENST00000391813 PRIM1P49642 420 aaKnown RBP22.92■■□□□ 1.26
SHANK1-203ENST00000391813 TTC22Q5TAA0 569 aa22.91■■□□□ 1.26
SHANK1-203ENST00000391813 CTDP1Q9Y5B0 961 aaPredicted RBP22.91■■□□□ 1.26
SHANK1-203ENST00000391813 SAMD9Q5K651 1589 aa22.91■■□□□ 1.26
SHANK1-203ENST00000391813 IMMTQ16891 758 aaKnown RBP22.91■■□□□ 1.26
SHANK1-203ENST00000391813 ZNF652Q9Y2D9 606 aa22.91■■□□□ 1.26
SHANK1-203ENST00000391813 SMARCC1Q92922 1105 aaPredicted RBP22.91■■□□□ 1.26
SHANK1-203ENST00000391813 IVLP07476 585 aa22.9■■□□□ 1.26
SHANK1-203ENST00000391813 PRPF40BQ6NWY9 871 aaKnown RBP22.9■■□□□ 1.26
SHANK1-203ENST00000391813 DDX24Q9GZR7 859 aaKnown RBP eCLIP22.9■■□□□ 1.26
SHANK1-203ENST00000391813 GNL3LQ9NVN8 582 aaKnown RBP22.9■■□□□ 1.26
SHANK1-203ENST00000391813 IL16Q14005 1332 aa22.9■■□□□ 1.26
SHANK1-203ENST00000391813 TMX3Q96JJ7 454 aa22.9■■□□□ 1.26
SHANK1-203ENST00000391813 ANKRD36BQ8N2N9 1353 aa22.9■■□□□ 1.26
SHANK1-203ENST00000391813 CCDC158Q5M9N0 1113 aa22.9■■□□□ 1.26
SHANK1-203ENST00000391813 LMAN1P49257 510 aa22.89■■□□□ 1.26
SHANK1-203ENST00000391813 KIAA1328Q86T90 577 aa22.89■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms