RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 SLC15A2Q16348 729 aa13.09□□□□□ -0.31
VPS53-202ENST00000389040 AKT1S1Q96B36 256 aa13.09□□□□□ -0.31
VPS53-202ENST00000389040 SPINK5Q9NQ38 1064 aaPredicted RBP13.09□□□□□ -0.31
VPS53-202ENST00000389040 MIS18AQ9NYP9 233 aa13.09□□□□□ -0.31
VPS53-202ENST00000389040 PAPPAQ13219 1627 aa13.09□□□□□ -0.31
VPS53-202ENST00000389040 KAT6BQ8WYB5 2073 aa13.08□□□□□ -0.31
VPS53-202ENST00000389040 SIPA1L3O60292 1781 aaPredicted RBP13.08□□□□□ -0.31
VPS53-202ENST00000389040 DLG5Q8TDM6 1919 aa13.08□□□□□ -0.32
VPS53-202ENST00000389040 ITPK1Q13572 414 aa13.08□□□□□ -0.32
VPS53-202ENST00000389040 MBIPQ9NS73 344 aa13.08□□□□□ -0.32
VPS53-202ENST00000389040 KCNQ3O43525 872 aa13.07□□□□□ -0.32
VPS53-202ENST00000389040 CYP19A1P11511 503 aaPredicted RBP13.07□□□□□ -0.32
VPS53-202ENST00000389040 LAS1LQ9Y4W2 734 aaKnown RBP13.07□□□□□ -0.32
VPS53-202ENST00000389040 ERBB4Q15303 1308 aa13.07□□□□□ -0.32
VPS53-202ENST00000389040 CICQ96RK0 1608 aaPredicted RBP13.07□□□□□ -0.32
VPS53-202ENST00000389040 SSFA2P28290 1259 aa13.07□□□□□ -0.32
VPS53-202ENST00000389040 LINC00116Q8NCU8 138 aa13.07□□□□□ -0.32
VPS53-202ENST00000389040 AK7Q96M32 723 aa13.07□□□□□ -0.32
VPS53-202ENST00000389040 RREB1Q92766 1687 aa13.06□□□□□ -0.32
VPS53-202ENST00000389040 DNAJC10Q8IXB1 793 aa13.06□□□□□ -0.32
VPS53-202ENST00000389040 TFCP2L1Q9NZI6 479 aa13.06□□□□□ -0.32
VPS53-202ENST00000389040 RPS6KA4O75676 772 aa13.05□□□□□ -0.32
VPS53-202ENST00000389040 FOXD4L1Q9NU39 408 aa13.05□□□□□ -0.32
VPS53-202ENST00000389040 CCDC87Q9NVE4 849 aa13.05□□□□□ -0.32
VPS53-202ENST00000389040 RTCBQ9Y3I0 505 aaKnown RBP13.05□□□□□ -0.32
VPS53-202ENST00000389040 CRKLP46109 303 aaKnown RBP13.05□□□□□ -0.32
VPS53-202ENST00000389040 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.05□□□□□ -0.32
VPS53-202ENST00000389040 SLC16A10Q8TF71 515 aa13.05□□□□□ -0.32
VPS53-202ENST00000389040 CRBNQ96SW2 442 aa13.05□□□□□ -0.32
VPS53-202ENST00000389040 UBR2Q8IWV8 1755 aa13.05□□□□□ -0.32
VPS53-202ENST00000389040 IL6STP40189 918 aaPredicted RBP13.04□□□□□ -0.32
VPS53-202ENST00000389040 KCNQ4P56696 695 aa13.04□□□□□ -0.32
VPS53-202ENST00000389040 INTS5Q6P9B9 1019 aaKnown RBP13.04□□□□□ -0.32
VPS53-202ENST00000389040 C5P01031 1676 aa13.04□□□□□ -0.32
VPS53-202ENST00000389040 RGL2O15211 777 aa13.03□□□□□ -0.32
VPS53-202ENST00000389040 MAPK8IP2Q13387 824 aaPredicted RBP13.03□□□□□ -0.32
VPS53-202ENST00000389040 NPM2Q86SE8 214 aaKnown RBP13.03□□□□□ -0.32
VPS53-202ENST00000389040 ZNF428Q96B54 188 aa13.03□□□□□ -0.32
VPS53-202ENST00000389040 USP16Q9Y5T5 823 aa13.03□□□□□ -0.32
VPS53-202ENST00000389040 A0A087WZG4 1122 aa13.03□□□□□ -0.32
VPS53-202ENST00000389040 CT47B1P0C2W7 299 aaPredicted RBP13.03□□□□□ -0.32
VPS53-202ENST00000389040 ZNF827Q17R98 1081 aa13.03□□□□□ -0.32
VPS53-202ENST00000389040 TRAPPC3LQ5T215 181 aa13.03□□□□□ -0.32
VPS53-202ENST00000389040 C20orf194Q5TEA3 1177 aa13.03□□□□□ -0.32
VPS53-202ENST00000389040 ANO8Q9HCE9 1232 aaPredicted RBP13.03□□□□□ -0.32
VPS53-202ENST00000389040 FANCIQ9NVI1 1328 aa13.03□□□□□ -0.32
VPS53-202ENST00000389040 VIRMAQ69YN4 1812 aaKnown RBP13.03□□□□□ -0.32
VPS53-202ENST00000389040 KDM3BQ7LBC6 1761 aa13.02□□□□□ -0.32
VPS53-202ENST00000389040 GNPATO15228 680 aa13.02□□□□□ -0.32
VPS53-202ENST00000389040 NUP188Q5SRE5 1749 aa13.02□□□□□ -0.33
VPS53-202ENST00000389040 EIF5P55010 431 aaKnown RBP13.01□□□□□ -0.33
VPS53-202ENST00000389040 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.01□□□□□ -0.33
VPS53-202ENST00000389040 CCDC30Q5VVM6 783 aa13.01□□□□□ -0.33
VPS53-202ENST00000389040 DBF4Q9UBU7 674 aaPredicted RBP13.01□□□□□ -0.33
VPS53-202ENST00000389040 C4BP0C0L5 1744 aa13.01□□□□□ -0.33
VPS53-202ENST00000389040 R3HDM1Q15032 1099 aaKnown RBP13□□□□□ -0.33
VPS53-202ENST00000389040 HDGFL1Q5TGJ6 251 aa13□□□□□ -0.33
VPS53-202ENST00000389040 TSR2Q969E8 191 aaKnown RBP13□□□□□ -0.33
VPS53-202ENST00000389040 PNPLA7Q6ZV29 1317 aa13□□□□□ -0.33
VPS53-202ENST00000389040 RFC4P35249 363 aa13□□□□□ -0.33
VPS53-202ENST00000389040 TWISTNBQ3B726 338 aaPredicted RBP13□□□□□ -0.33
VPS53-202ENST00000389040 C8orf58Q8NAV2 365 aa13□□□□□ -0.33
VPS53-202ENST00000389040 ZBTB1Q9Y2K1 713 aa13□□□□□ -0.33
VPS53-202ENST00000389040 DDX21Q9NR30 783 aaKnown RBP eCLIP12.99□□□□□ -0.33
VPS53-202ENST00000389040 HYPKQ9NX55 129 aa12.99□□□□□ -0.33
VPS53-202ENST00000389040 PRAMEF22A3QJZ6 481 aa12.98□□□□□ -0.33
VPS53-202ENST00000389040 BCAR3O75815 825 aa12.98□□□□□ -0.33
VPS53-202ENST00000389040 A1BGP04217 495 aa12.98□□□□□ -0.33
VPS53-202ENST00000389040 ARHGEF1Q92888 912 aaKnown RBP12.98□□□□□ -0.33
VPS53-202ENST00000389040 COL5A3P25940 1745 aaPredicted RBP12.98□□□□□ -0.33
VPS53-202ENST00000389040 ZPR1O75312 459 aa12.98□□□□□ -0.33
VPS53-202ENST00000389040 VAMP4O75379 141 aa12.98□□□□□ -0.33
VPS53-202ENST00000389040 EIF2S2P20042 333 aaKnown RBP12.98□□□□□ -0.33
VPS53-202ENST00000389040 CANXP27824 592 aaKnown RBP12.98□□□□□ -0.33
VPS53-202ENST00000389040 EXOSC9Q06265 439 aaKnown RBP12.98□□□□□ -0.33
VPS53-202ENST00000389040 COL23A1Q86Y22 540 aaPredicted RBP12.98□□□□□ -0.33
VPS53-202ENST00000389040 NLGN1Q8N2Q7 840 aa12.98□□□□□ -0.33
VPS53-202ENST00000389040 MTFR1LQ9H019 292 aa12.98□□□□□ -0.33
VPS53-202ENST00000389040 NARFQ9UHQ1 456 aa12.98□□□□□ -0.33
VPS53-202ENST00000389040 TJP1Q07157 1748 aa12.97□□□□□ -0.33
VPS53-202ENST00000389040 TAF1LQ8IZX4 1826 aa12.97□□□□□ -0.33
VPS53-202ENST00000389040 NBPF26B4DH59 902 aa12.97□□□□□ -0.33
VPS53-202ENST00000389040 NBPF10Q6P3W6 841 aaKnown RBP12.97□□□□□ -0.33
VPS53-202ENST00000389040 CLEC4GQ6UXB4 293 aa12.97□□□□□ -0.33
VPS53-202ENST00000389040 NBPF15Q8N660 670 aa12.97□□□□□ -0.33
VPS53-202ENST00000389040 STK31Q9BXU1 1019 aa12.97□□□□□ -0.33
VPS53-202ENST00000389040 COL15A1P39059 1388 aa12.97□□□□□ -0.33
VPS53-202ENST00000389040 ERVV-1B6SEH8 477 aa12.96□□□□□ -0.33
VPS53-202ENST00000389040 PDIA6Q15084 440 aa12.96□□□□□ -0.33
VPS53-202ENST00000389040 KRT24Q2M2I5 525 aa12.96□□□□□ -0.33
VPS53-202ENST00000389040 USP42Q9H9J4 1324 aaKnown RBP12.96□□□□□ -0.34
VPS53-202ENST00000389040 TSPYL6Q8N831 410 aa12.96□□□□□ -0.34
VPS53-202ENST00000389040 QSER1Q2KHR3 1735 aa12.95□□□□□ -0.34
VPS53-202ENST00000389040 ELL2O00472 640 aaPredicted RBP12.95□□□□□ -0.34
VPS53-202ENST00000389040 PHF14O94880 888 aa12.95□□□□□ -0.34
VPS53-202ENST00000389040 LRP10Q7Z4F1 713 aa12.95□□□□□ -0.34
VPS53-202ENST00000389040 ZNF652Q9Y2D9 606 aa12.95□□□□□ -0.34
VPS53-202ENST00000389040 PSDA5PKW4 1024 aaPredicted RBP12.94□□□□□ -0.34
VPS53-202ENST00000389040 MSH5O43196 834 aa12.94□□□□□ -0.34
VPS53-202ENST00000389040 RARSP54136 660 aaKnown RBP12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms