RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 C6orf163Q5TEZ5 329 aa14.41□□□□□ -0.1
VPS13A-204ENST00000376634 NAPBQ9H115 298 aa14.41□□□□□ -0.1
VPS13A-204ENST00000376634 ESPNB1AK53 854 aa14.41□□□□□ -0.1
VPS13A-204ENST00000376634 PAFAH1B1P43034 410 aa14.41□□□□□ -0.1
VPS13A-204ENST00000376634 PUS7Q96PZ0 661 aaKnown RBP14.41□□□□□ -0.1
VPS13A-204ENST00000376634 HLTFQ14527 1009 aaKnown RBP eCLIP14.41□□□□□ -0.11e-6■■□□□ 13.4
VPS13A-204ENST00000376634 PPP1R14CQ8TAE6 165 aa14.41□□□□□ -0.1
VPS13A-204ENST00000376634 PTPN23Q9H3S7 1636 aa14.4□□□□□ -0.1
VPS13A-204ENST00000376634 TTLL12Q14166 644 aaPredicted RBP14.4□□□□□ -0.1
VPS13A-204ENST00000376634 WDR63Q8IWG1 891 aa14.4□□□□□ -0.1
VPS13A-204ENST00000376634 SCAND2PQ9GZW5 306 aaPredicted RBP14.4□□□□□ -0.1
VPS13A-204ENST00000376634 YEATS4O95619 227 aa14.4□□□□□ -0.1
VPS13A-204ENST00000376634 CTCFLQ8NI51 663 aaPredicted RBP14.4□□□□□ -0.1
VPS13A-204ENST00000376634 NUTM2BA6NNL0 878 aaPredicted RBP14.4□□□□□ -0.1
VPS13A-204ENST00000376634 NUTM2EB1AL46 878 aaPredicted RBP14.4□□□□□ -0.1
VPS13A-204ENST00000376634 KIF20AO95235 890 aa14.4□□□□□ -0.1
VPS13A-204ENST00000376634 NUTM2AQ8IVF1 878 aaPredicted RBP14.4□□□□□ -0.1
VPS13A-204ENST00000376634 SLF2Q8IX21 1173 aa14.4□□□□□ -0.1
VPS13A-204ENST00000376634 MYCNP04198 464 aaPredicted RBP14.4□□□□□ -0.1
VPS13A-204ENST00000376634 C8orf76Q96K31 380 aa14.4□□□□□ -0.1
VPS13A-204ENST00000376634 TNNT1P13805 278 aa14.4□□□□□ -0.1
VPS13A-204ENST00000376634 PRKCSHP14314 528 aaPredicted RBP14.4□□□□□ -0.1
VPS13A-204ENST00000376634 FAM114A1Q8IWE2 563 aa14.4□□□□□ -0.1
VPS13A-204ENST00000376634 CLIP2Q9UDT6 1046 aa14.4□□□□□ -0.1
VPS13A-204ENST00000376634 DDX12PQ92771 950 aa14.4□□□□□ -0.1
VPS13A-204ENST00000376634 RTEL1-TNFRSF6BF6WH68 1400 aa14.4□□□□□ -0.1
VPS13A-204ENST00000376634 CDK19Q9BWU1 502 aa14.4□□□□□ -0.1
VPS13A-204ENST00000376634 SH2B1Q9NRF2 756 aaPredicted RBP14.4□□□□□ -0.1
VPS13A-204ENST00000376634 PRDM11Q9NQV5 511 aa14.4□□□□□ -0.1
VPS13A-204ENST00000376634 SPECC1Q5M775 1068 aa14.39□□□□□ -0.11
VPS13A-204ENST00000376634 SLC12A7Q9Y666 1083 aa14.39□□□□□ -0.11
VPS13A-204ENST00000376634 CASKIN1Q8WXD9 1431 aa14.39□□□□□ -0.11
VPS13A-204ENST00000376634 KIF4BQ2VIQ3 1234 aa14.39□□□□□ -0.11
VPS13A-204ENST00000376634 CTAGE5O15320 804 aa14.39□□□□□ -0.11
VPS13A-204ENST00000376634 MINDY4BA8MYZ0 360 aa14.39□□□□□ -0.11
VPS13A-204ENST00000376634 IL27Q8NEV9 243 aa14.39□□□□□ -0.11
VPS13A-204ENST00000376634 CEP112Q8N8E3 955 aa14.39□□□□□ -0.11
VPS13A-204ENST00000376634 IPO4Q8TEX9 1081 aaKnown RBP14.39□□□□□ -0.11
VPS13A-204ENST00000376634 CATIPQ7Z7H3 387 aa14.38□□□□□ -0.11
VPS13A-204ENST00000376634 TXNDC2Q86VQ3 553 aa14.38□□□□□ -0.11
VPS13A-204ENST00000376634 RAB11FIP3O75154 756 aa14.38□□□□□ -0.11
VPS13A-204ENST00000376634 ZWINTO95229 277 aa14.38□□□□□ -0.11
VPS13A-204ENST00000376634 TDRD12Q587J7 1177 aaKnown RBP14.38□□□□□ -0.11
VPS13A-204ENST00000376634 HFM1A2PYH4 1435 aa14.38□□□□□ -0.11
VPS13A-204ENST00000376634 BICDL1Q6ZP65 573 aa14.38□□□□□ -0.11
VPS13A-204ENST00000376634 HMGB1P09429 215 aaKnown RBP14.38□□□□□ -0.11
VPS13A-204ENST00000376634 LMAN1P49257 510 aa14.37□□□□□ -0.11
VPS13A-204ENST00000376634 STX1AQ16623 288 aa14.37□□□□□ -0.11
VPS13A-204ENST00000376634 IQCA1Q86XH1 822 aa14.37□□□□□ -0.11
VPS13A-204ENST00000376634 LRRC45Q96CN5 670 aa14.37□□□□□ -0.11
VPS13A-204ENST00000376634 STXBP4Q6ZWJ1 553 aa14.37□□□□□ -0.11
VPS13A-204ENST00000376634 EHBP1Q8NDI1 1231 aa14.37□□□□□ -0.11
VPS13A-204ENST00000376634 CCDC12Q8WUD4 166 aaPredicted RBP14.37□□□□□ -0.11
VPS13A-204ENST00000376634 ANKRD30BQ9BXX2 1392 aa14.37□□□□□ -0.11
VPS13A-204ENST00000376634 GOLGA8BA8MQT2 603 aa14.37□□□□□ -0.11
VPS13A-204ENST00000376634 SYNCQ9H7C4 482 aa14.37□□□□□ -0.11
VPS13A-204ENST00000376634 CUL7Q14999 1698 aa14.37□□□□□ -0.11
VPS13A-204ENST00000376634 SSRP1Q08945 709 aaKnown RBP14.37□□□□□ -0.11
VPS13A-204ENST00000376634 PRPF4BQ13523 1007 aaKnown RBP14.37□□□□□ -0.11
VPS13A-204ENST00000376634 ZSCAN30Q86W11 494 aa14.37□□□□□ -0.11
VPS13A-204ENST00000376634 SYCP3Q8IZU3 236 aa14.37□□□□□ -0.11
VPS13A-204ENST00000376634 MPHOSPH6Q99547 160 aaKnown RBP14.37□□□□□ -0.11
VPS13A-204ENST00000376634 ATAD2BQ9ULI0 1458 aa14.37□□□□□ -0.11
VPS13A-204ENST00000376634 RBM25P49756 843 aaKnown RBP14.37□□□□□ -0.11
VPS13A-204ENST00000376634 CCDC194A0A1B0GVG4 234 aa14.37□□□□□ -0.11
VPS13A-204ENST00000376634 ACTN2P35609 894 aa14.37□□□□□ -0.11
VPS13A-204ENST00000376634 CCDC141Q6ZP82 1450 aa14.36□□□□□ -0.11
VPS13A-204ENST00000376634 DAPK1P53355 1430 aa14.36□□□□□ -0.11
VPS13A-204ENST00000376634 POLR3GO15318 223 aaPredicted RBP14.36□□□□□ -0.11
VPS13A-204ENST00000376634 WDR97A6NE52 1622 aa14.36□□□□□ -0.11
VPS13A-204ENST00000376634 WDR78Q5VTH9 848 aa14.36□□□□□ -0.11
VPS13A-204ENST00000376634 PRDM10Q9NQV6 1147 aa14.36□□□□□ -0.11
VPS13A-204ENST00000376634 MAATS1Q7Z4T9 603 aa14.36□□□□□ -0.11
VPS13A-204ENST00000376634 ZNF692Q9BU19 519 aaPredicted RBP14.36□□□□□ -0.11
VPS13A-204ENST00000376634 GNAT3A8MTJ3 354 aa14.36□□□□□ -0.11
VPS13A-204ENST00000376634 RPGRQ92834 1020 aaKnown RBP14.36□□□□□ -0.11
VPS13A-204ENST00000376634 CALML4Q96GE6 196 aa14.36□□□□□ -0.11
VPS13A-204ENST00000376634 GSDMDP57764 484 aa14.36□□□□□ -0.11
VPS13A-204ENST00000376634 KIF5BP33176 963 aa14.36□□□□□ -0.11
VPS13A-204ENST00000376634 CDCA7LQ96GN5 454 aa14.36□□□□□ -0.11
VPS13A-204ENST00000376634 PUF60Q9UHX1 559 aaKnown RBP14.36□□□□□ -0.11
VPS13A-204ENST00000376634 NKTRP30414 1462 aaKnown RBP14.36□□□□□ -0.11
VPS13A-204ENST00000376634 DAAM2Q86T65 1068 aa14.36□□□□□ -0.11
VPS13A-204ENST00000376634 RAB3IL1Q8TBN0 382 aa14.36□□□□□ -0.11
VPS13A-204ENST00000376634 CCDC85AQ96PX6 553 aaPredicted RBP14.36□□□□□ -0.11
VPS13A-204ENST00000376634 MAP3K12Q12852 859 aa14.35□□□□□ -0.11
VPS13A-204ENST00000376634 RNF41Q9H4P4 317 aaPredicted RBP14.35□□□□□ -0.11
VPS13A-204ENST00000376634 A0A1W2PRG0 241 aa14.35□□□□□ -0.11
VPS13A-204ENST00000376634 BAG4O95429 457 aaKnown RBP14.35□□□□□ -0.11
VPS13A-204ENST00000376634 SLC5A1P13866 664 aa14.35□□□□□ -0.11
VPS13A-204ENST00000376634 KIF1BPQ96EK5 621 aa14.35□□□□□ -0.11
VPS13A-204ENST00000376634 CFTRP13569 1480 aa14.35□□□□□ -0.11
VPS13A-204ENST00000376634 PLVAPQ9BX97 442 aa14.35□□□□□ -0.11
VPS13A-204ENST00000376634 AMPD3Q01432 767 aa14.35□□□□□ -0.11
VPS13A-204ENST00000376634 RANBP6O60518 1105 aaKnown RBP14.35□□□□□ -0.11
VPS13A-204ENST00000376634 TBC1D5Q92609 795 aa14.35□□□□□ -0.11
VPS13A-204ENST00000376634 TMCO5BA8MYB1 307 aa14.35□□□□□ -0.11
VPS13A-204ENST00000376634 MTIF2P46199 727 aaKnown RBP14.35□□□□□ -0.11
VPS13A-204ENST00000376634 SPTY2D1Q68D10 685 aaPredicted RBP14.35□□□□□ -0.11
VPS13A-204ENST00000376634 PYM1Q9BRP8 204 aaKnown RBP14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms