RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 ANO8Q9HCE9 1232 aaPredicted RBP5.23□□□□□ -1.57
LIG4-201ENST00000356922 TNS1Q9HBL0 1735 aaKnown RBP5.23□□□□□ -1.57
LIG4-201ENST00000356922 TWISTNBQ3B726 338 aaPredicted RBP5.23□□□□□ -1.57
LIG4-201ENST00000356922 C5P01031 1676 aa5.23□□□□□ -1.57
LIG4-201ENST00000356922 UBR2Q8IWV8 1755 aa5.23□□□□□ -1.57
LIG4-201ENST00000356922 PAPPAQ13219 1627 aa5.23□□□□□ -1.57
LIG4-201ENST00000356922 PLSCR1O15162 318 aa5.23□□□□□ -1.57
LIG4-201ENST00000356922 ZNF827Q17R98 1081 aa5.23□□□□□ -1.57
LIG4-201ENST00000356922 SSH1Q8WYL5 1049 aa5.23□□□□□ -1.57
LIG4-201ENST00000356922 PLIN1O60240 522 aa5.23□□□□□ -1.57
LIG4-201ENST00000356922 TTC5Q8N0Z6 440 aa5.23□□□□□ -1.57
LIG4-201ENST00000356922 NGEFQ8N5V2 710 aa5.23□□□□□ -1.57
LIG4-201ENST00000356922 FMNL2Q96PY5 1086 aa5.23□□□□□ -1.57
LIG4-201ENST00000356922 CCNL1Q9UK58 526 aaPredicted RBP5.23□□□□□ -1.57
LIG4-201ENST00000356922 ZBTB1Q9Y2K1 713 aa5.23□□□□□ -1.57
LIG4-201ENST00000356922 MYL6BP14649 208 aa5.22□□□□□ -1.57
LIG4-201ENST00000356922 CHPF2Q9P2E5 772 aa5.22□□□□□ -1.57
LIG4-201ENST00000356922 SNRPA1P09661 255 aaKnown RBP5.22□□□□□ -1.57
LIG4-201ENST00000356922 CRKLP46109 303 aaKnown RBP5.22□□□□□ -1.57
LIG4-201ENST00000356922 RARSP54136 660 aaKnown RBP5.22□□□□□ -1.57
LIG4-201ENST00000356922 CANXP27824 592 aaKnown RBP5.22□□□□□ -1.57
LIG4-201ENST00000356922 MYH16Q9H6N6 1097 aa5.22□□□□□ -1.57
LIG4-201ENST00000356922 LY75O60449 1722 aa5.21□□□□□ -1.57
LIG4-201ENST00000356922 SLC4A2P04920 1241 aa5.21□□□□□ -1.57
LIG4-201ENST00000356922 TJP1Q07157 1748 aa5.21□□□□□ -1.57
LIG4-201ENST00000356922 TTLL7Q6ZT98 887 aa5.21□□□□□ -1.57
LIG4-201ENST00000356922 BABAM1Q9NWV8 329 aa5.21□□□□□ -1.57
LIG4-201ENST00000356922 C20orf194Q5TEA3 1177 aa5.21□□□□□ -1.58
LIG4-201ENST00000356922 CALD1Q05682 793 aaKnown RBP5.21□□□□□ -1.58
LIG4-201ENST00000356922 HDGFL1Q5TGJ6 251 aa5.21□□□□□ -1.58
LIG4-201ENST00000356922 AIMP1Q12904 312 aaKnown RBP5.2□□□□□ -1.58
LIG4-201ENST00000356922 VSIG10Q8N0Z9 540 aa5.2□□□□□ -1.58
LIG4-201ENST00000356922 MRPL50Q8N5N7 158 aaKnown RBP5.2□□□□□ -1.58
LIG4-201ENST00000356922 AKT1S1Q96B36 256 aa5.2□□□□□ -1.58
LIG4-201ENST00000356922 TBC1D2BQ9UPU7 963 aa5.2□□□□□ -1.58
LIG4-201ENST00000356922 F6X3S4 739 aa5.2□□□□□ -1.58
LIG4-201ENST00000356922 PHF14O94880 888 aa5.2□□□□□ -1.58
LIG4-201ENST00000356922 SMARCC1Q92922 1105 aaPredicted RBP5.2□□□□□ -1.58
LIG4-201ENST00000356922 ZNF330Q9Y3S2 320 aaPredicted RBP5.2□□□□□ -1.58
LIG4-201ENST00000356922 TAF1LQ8IZX4 1826 aa5.2□□□□□ -1.58
LIG4-201ENST00000356922 RLBP1P12271 317 aa5.2□□□□□ -1.58
LIG4-201ENST00000356922 EIF5P55010 431 aaKnown RBP5.2□□□□□ -1.58
LIG4-201ENST00000356922 HLFQ16534 295 aa5.2□□□□□ -1.58
LIG4-201ENST00000356922 COPS6Q7L5N1 327 aa5.2□□□□□ -1.58
LIG4-201ENST00000356922 SRP68Q9UHB9 627 aaKnown RBP5.2□□□□□ -1.58
LIG4-201ENST00000356922 ARHGEF1Q92888 912 aaKnown RBP5.19□□□□□ -1.58
LIG4-201ENST00000356922 BCL2L12Q9HB09 334 aa5.19□□□□□ -1.58
LIG4-201ENST00000356922 NOB1Q9ULX3 412 aaKnown RBP5.19□□□□□ -1.58
LIG4-201ENST00000356922 SUPT16HQ9Y5B9 1047 aaKnown RBP5.19□□□□□ -1.58
LIG4-201ENST00000356922 GNPATO15228 680 aa5.19□□□□□ -1.58
LIG4-201ENST00000356922 COL23A1Q86Y22 540 aaPredicted RBP5.19□□□□□ -1.58
LIG4-201ENST00000356922 XAGE3Q8WTP9 111 aa5.19□□□□□ -1.58
LIG4-201ENST00000356922 COL5A3P25940 1745 aaPredicted RBP5.19□□□□□ -1.58
LIG4-201ENST00000356922 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP5.19□□□□□ -1.58
LIG4-201ENST00000356922 PSDA5PKW4 1024 aaPredicted RBP5.19□□□□□ -1.58
LIG4-201ENST00000356922 CLUAP1Q96AJ1 413 aa5.19□□□□□ -1.58
LIG4-201ENST00000356922 DDX21Q9NR30 783 aaKnown RBP eCLIP5.19□□□□□ -1.58
LIG4-201ENST00000356922 CCDC87Q9NVE4 849 aa5.19□□□□□ -1.58
LIG4-201ENST00000356922 RCAN3Q9UKA8 241 aa5.19□□□□□ -1.58
LIG4-201ENST00000356922 STARD3NLO95772 234 aa5.18□□□□□ -1.58
LIG4-201ENST00000356922 BAG6P46379 1132 aa5.18□□□□□ -1.58
LIG4-201ENST00000356922 IRX6P78412 446 aaPredicted RBP5.18□□□□□ -1.58
LIG4-201ENST00000356922 SLC27A3Q5K4L6 730 aa5.18□□□□□ -1.58
LIG4-201ENST00000356922 SYNE4Q8N205 404 aa5.18□□□□□ -1.58
LIG4-201ENST00000356922 PNPLA7Q6ZV29 1317 aa5.18□□□□□ -1.58
LIG4-201ENST00000356922 JARID2Q92833 1246 aaPredicted RBP5.18□□□□□ -1.58
LIG4-201ENST00000356922 FRAT1Q92837 279 aaPredicted RBP5.18□□□□□ -1.58
LIG4-201ENST00000356922 ARXQ96QS3 562 aa5.18□□□□□ -1.58
LIG4-201ENST00000356922 ZBTB3Q9H5J0 574 aa5.18□□□□□ -1.58
LIG4-201ENST00000356922 SMC4Q9NTJ3 1288 aa5.18□□□□□ -1.58
LIG4-201ENST00000356922 DBF4Q9UBU7 674 aaPredicted RBP5.18□□□□□ -1.58
LIG4-201ENST00000356922 C4BP0C0L5 1744 aa5.18□□□□□ -1.58
LIG4-201ENST00000356922 SOS1Q07889 1333 aaPredicted RBP5.18□□□□□ -1.58
LIG4-201ENST00000356922 PI4KAP2A4QPH2 592 aa5.18□□□□□ -1.58
LIG4-201ENST00000356922 HOXB7P09629 217 aa5.18□□□□□ -1.58
LIG4-201ENST00000356922 FLIIQ13045 1269 aa5.18□□□□□ -1.58
LIG4-201ENST00000356922 SF3B2Q13435 895 aaKnown RBP5.18□□□□□ -1.58
LIG4-201ENST00000356922 R3HDM1Q15032 1099 aaKnown RBP5.18□□□□□ -1.58
LIG4-201ENST00000356922 SLC15A2Q16348 729 aa5.18□□□□□ -1.58
LIG4-201ENST00000356922 CCDC125Q86Z20 511 aa5.18□□□□□ -1.58
LIG4-201ENST00000356922 PI4KAP1Q8N8J0 262 aa5.18□□□□□ -1.58
LIG4-201ENST00000356922 ADCY9O60503 1353 aa5.18□□□□□ -1.58
LIG4-201ENST00000356922 RPS6KA4O75676 772 aa5.18□□□□□ -1.58
LIG4-201ENST00000356922 TRIM27P14373 513 aa5.18□□□□□ -1.58
LIG4-201ENST00000356922 CCDC30Q5VVM6 783 aa5.18□□□□□ -1.58
LIG4-201ENST00000356922 PANK1Q8TE04 598 aa5.18□□□□□ -1.58
LIG4-201ENST00000356922 TFCP2L1Q9NZI6 479 aa5.18□□□□□ -1.58
LIG4-201ENST00000356922 ATP5J2-PTCD1G3V325 749 aa5.17□□□□□ -1.58
LIG4-201ENST00000356922 CAMTA2O94983 1202 aa5.17□□□□□ -1.58
LIG4-201ENST00000356922 FKBP8Q14318 412 aa5.17□□□□□ -1.58
LIG4-201ENST00000356922 RC3H1Q5TC82 1133 aaKnown RBP5.17□□□□□ -1.58
LIG4-201ENST00000356922 USPL1Q5W0Q7 1092 aa5.17□□□□□ -1.58
LIG4-201ENST00000356922 CCDC24Q8N4L8 307 aa5.17□□□□□ -1.58
LIG4-201ENST00000356922 TUBGCP6Q96RT7 1819 aa5.17□□□□□ -1.58
LIG4-201ENST00000356922 CNTNAP4Q9C0A0 1308 aa5.17□□□□□ -1.58
LIG4-201ENST00000356922 IGKV5-2P06315 115 aa5.17□□□□□ -1.58
LIG4-201ENST00000356922 IL6STP40189 918 aaPredicted RBP5.17□□□□□ -1.58
LIG4-201ENST00000356922 CWF19L2Q2TBE0 894 aaKnown RBP5.17□□□□□ -1.58
LIG4-201ENST00000356922 MSL1Q68DK7 614 aa5.17□□□□□ -1.58
LIG4-201ENST00000356922 NUP188Q5SRE5 1749 aa5.17□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms