RNA–Protein interactions for RNA: ENST00000321356.8

CLK1-201, Transcript of CDC like kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK1, Length 1,888 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-201ENST00000321356 PI4K2BQ8TCG2 481 aa10.57□□□□□ -0.72
CLK1-201ENST00000321356 NECTIN2Q92692 538 aa10.57□□□□□ -0.72
CLK1-201ENST00000321356 IL25Q9H293 177 aa10.57□□□□□ -0.72
CLK1-201ENST00000321356 HDGFL1Q5TGJ6 251 aa10.57□□□□□ -0.72
CLK1-201ENST00000321356 LMO7Q8WWI1 1683 aa10.56□□□□□ -0.72
CLK1-201ENST00000321356 PHRF1Q9P1Y6 1649 aaKnown RBP10.56□□□□□ -0.72
CLK1-201ENST00000321356 NFAT5O94916 1531 aa10.56□□□□□ -0.72
CLK1-201ENST00000321356 RAD50Q92878 1312 aa10.56□□□□□ -0.72
CLK1-201ENST00000321356 OFD1O75665 1012 aa10.56□□□□□ -0.72
CLK1-201ENST00000321356 HOXB7P09629 217 aa10.56□□□□□ -0.72
CLK1-201ENST00000321356 CEBPAP49715 358 aaPredicted RBP10.56□□□□□ -0.72
CLK1-201ENST00000321356 PPP1R42Q7Z4L9 355 aa10.56□□□□□ -0.72
CLK1-201ENST00000321356 PHAXQ9H814 394 aaKnown RBP10.56□□□□□ -0.72
CLK1-201ENST00000321356 IL1RAPL2Q9NP60 686 aa10.56□□□□□ -0.72
CLK1-201ENST00000321356 NOL7Q9UMY1 257 aaKnown RBP10.56□□□□□ -0.72
CLK1-201ENST00000321356 USP42Q9H9J4 1324 aaKnown RBP10.55□□□□□ -0.72
CLK1-201ENST00000321356 SYCE3A1L190 88 aa10.55□□□□□ -0.72
CLK1-201ENST00000321356 SGSM2O43147 1006 aa10.55□□□□□ -0.72
CLK1-201ENST00000321356 TPM2P07951 284 aa10.55□□□□□ -0.72
CLK1-201ENST00000321356 RHPN1Q8TCX5 695 aa10.55□□□□□ -0.72
CLK1-201ENST00000321356 CNKSR2Q8WXI2 1034 aa10.55□□□□□ -0.72
CLK1-201ENST00000321356 UPF3BQ9BZI7 483 aaKnown RBP10.55□□□□□ -0.72
CLK1-201ENST00000321356 ZNF500O60304 480 aaPredicted RBP10.55□□□□□ -0.72
CLK1-201ENST00000321356 MSNP26038 577 aaKnown RBP10.55□□□□□ -0.72
CLK1-201ENST00000321356 EIF4A1P60842 406 aaKnown RBP10.55□□□□□ -0.72
CLK1-201ENST00000321356 FOXD4L5Q5VV16 416 aaPredicted RBP10.55□□□□□ -0.72
CLK1-201ENST00000321356 NUTM1Q86Y26 1132 aa10.55□□□□□ -0.72
CLK1-201ENST00000321356 FOXD4L4Q8WXT5 416 aaPredicted RBP10.55□□□□□ -0.72
CLK1-201ENST00000321356 KIF1BPQ96EK5 621 aa10.55□□□□□ -0.72
CLK1-201ENST00000321356 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.55□□□□□ -0.72
CLK1-201ENST00000321356 WDR33Q9C0J8 1336 aaKnown RBP10.54□□□□□ -0.72
CLK1-201ENST00000321356 FER1L4A9Z1Z3 1794 aa10.54□□□□□ -0.72
CLK1-201ENST00000321356 RRP9O43818 475 aaKnown RBP10.54□□□□□ -0.72
CLK1-201ENST00000321356 SURF6O75683 361 aaKnown RBP10.54□□□□□ -0.72
CLK1-201ENST00000321356 TERF1P54274 439 aa10.54□□□□□ -0.72
CLK1-201ENST00000321356 BEND3Q5T5X7 828 aa10.54□□□□□ -0.72
CLK1-201ENST00000321356 THEMISQ8N1K5 641 aaPredicted RBP10.54□□□□□ -0.72
CLK1-201ENST00000321356 TMEM87AQ8NBN3 555 aa10.54□□□□□ -0.72
CLK1-201ENST00000321356 TTC14Q96N46 770 aa10.54□□□□□ -0.72
CLK1-201ENST00000321356 LSG1Q9H089 658 aaKnown RBP10.54□□□□□ -0.72
CLK1-201ENST00000321356 RPAP1Q9BWH6 1393 aaPredicted RBP10.54□□□□□ -0.72
CLK1-201ENST00000321356 MTX1Q13505 466 aa10.53□□□□□ -0.72
CLK1-201ENST00000321356 NUTM2GQ5VZR2 741 aa10.53□□□□□ -0.72
CLK1-201ENST00000321356 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.53□□□□□ -0.72
CLK1-201ENST00000321356 ABTB2Q8N961 1025 aa10.53□□□□□ -0.72
CLK1-201ENST00000321356 IP6K1Q92551 441 aa10.53□□□□□ -0.72
CLK1-201ENST00000321356 CHMP4AQ9BY43 222 aa10.53□□□□□ -0.72
CLK1-201ENST00000321356 SNX14Q9Y5W7 946 aa10.53□□□□□ -0.72
CLK1-201ENST00000321356 TCHHQ07283 1943 aa10.53□□□□□ -0.72
CLK1-201ENST00000321356 SRGAP3O43295 1099 aa10.53□□□□□ -0.72
CLK1-201ENST00000321356 NBPF7P0C2Y1 421 aaPredicted RBP10.53□□□□□ -0.72
CLK1-201ENST00000321356 KCNA6P17658 529 aa10.53□□□□□ -0.72
CLK1-201ENST00000321356 MCM5P33992 734 aa10.53□□□□□ -0.72
CLK1-201ENST00000321356 NOL8Q76FK4 1167 aaKnown RBP10.53□□□□□ -0.72
CLK1-201ENST00000321356 DNAAF4Q8WXU2 420 aa10.53□□□□□ -0.72
CLK1-201ENST00000321356 ZKSCAN5Q9Y2L8 839 aa10.53□□□□□ -0.72
CLK1-201ENST00000321356 ADGRL3Q9HAR2 1447 aa10.53□□□□□ -0.72
CLK1-201ENST00000321356 ADCY9O60503 1353 aa10.52□□□□□ -0.72
CLK1-201ENST00000321356 RGPD2P0DJD1 1756 aa10.52□□□□□ -0.73
CLK1-201ENST00000321356 NCAPD2Q15021 1401 aa10.52□□□□□ -0.73
CLK1-201ENST00000321356 HSP90AB4PQ58FF6 505 aa10.52□□□□□ -0.73
CLK1-201ENST00000321356 KIAA1211Q6ZU35 1233 aa10.52□□□□□ -0.73
CLK1-201ENST00000321356 CNTROBQ8N137 903 aa10.52□□□□□ -0.73
CLK1-201ENST00000321356 USHBP1Q8N6Y0 703 aa10.52□□□□□ -0.73
CLK1-201ENST00000321356 SYAP1Q96A49 352 aaPredicted RBP10.52□□□□□ -0.73
CLK1-201ENST00000321356 LTV1Q96GA3 475 aaPredicted RBP10.52□□□□□ -0.73
CLK1-201ENST00000321356 CHPF2Q9P2E5 772 aa10.52□□□□□ -0.73
CLK1-201ENST00000321356 TTC41PQ6P2S7 1318 aa10.52□□□□□ -0.73
CLK1-201ENST00000321356 OVOS2A0A0G2JMS6 1433 aa10.51□□□□□ -0.73
CLK1-201ENST00000321356 PI4KAP2A4QPH2 592 aa10.51□□□□□ -0.73
CLK1-201ENST00000321356 HOXD11P31277 338 aaPredicted RBP10.51□□□□□ -0.73
CLK1-201ENST00000321356 PI4KAP1Q8N8J0 262 aa10.51□□□□□ -0.73
CLK1-201ENST00000321356 TSPY26PQ9H489 355 aa10.51□□□□□ -0.73
CLK1-201ENST00000321356 GADD45BO75293 160 aaPredicted RBP10.51□□□□□ -0.73
CLK1-201ENST00000321356 PHF14O94880 888 aa10.51□□□□□ -0.73
CLK1-201ENST00000321356 NBPF6Q5VWK0 638 aa10.51□□□□□ -0.73
CLK1-201ENST00000321356 USP48Q86UV5 1035 aa10.51□□□□□ -0.73
CLK1-201ENST00000321356 RASEFQ8IZ41 740 aa10.51□□□□□ -0.73
CLK1-201ENST00000321356 NBPF4Q96M43 638 aa10.51□□□□□ -0.73
CLK1-201ENST00000321356 LGR6Q9HBX8 967 aa10.51□□□□□ -0.73
CLK1-201ENST00000321356 CCDC39Q9UFE4 941 aa10.51□□□□□ -0.73
CLK1-201ENST00000321356 CHD2O14647 1828 aaKnown RBP10.5□□□□□ -0.73
CLK1-201ENST00000321356 GLRX3O76003 335 aaKnown RBP10.5□□□□□ -0.73
CLK1-201ENST00000321356 MAP4K4O95819 1239 aaPredicted RBP10.5□□□□□ -0.73
CLK1-201ENST00000321356 EIF2S2P20042 333 aaKnown RBP10.5□□□□□ -0.73
CLK1-201ENST00000321356 HSP90AA2PQ14568 343 aaPredicted RBP10.5□□□□□ -0.73
CLK1-201ENST00000321356 RUFY3Q7L099 469 aa10.5□□□□□ -0.73
CLK1-201ENST00000321356 KCNB2Q92953 911 aa10.5□□□□□ -0.73
CLK1-201ENST00000321356 PHF8Q9UPP1 1060 aa10.5□□□□□ -0.73
CLK1-201ENST00000321356 HEG1Q9ULI3 1381 aa10.5□□□□□ -0.73
CLK1-201ENST00000321356 SIPA1L3O60292 1781 aaPredicted RBP10.5□□□□□ -0.73
CLK1-201ENST00000321356 ZSCAN22P10073 491 aaPredicted RBP10.49□□□□□ -0.73
CLK1-201ENST00000321356 AK2P54819 239 aa10.49□□□□□ -0.73
CLK1-201ENST00000321356 AKAP4Q5JQC9 854 aa10.49□□□□□ -0.73
CLK1-201ENST00000321356 KLHL34Q8N239 644 aa10.49□□□□□ -0.73
CLK1-201ENST00000321356 LIMCH1Q9UPQ0 1083 aa10.49□□□□□ -0.73
CLK1-201ENST00000321356 LMTK3Q96Q04 1460 aa10.49□□□□□ -0.73
CLK1-201ENST00000321356 CAMTA1Q9Y6Y1 1673 aa10.49□□□□□ -0.73
CLK1-201ENST00000321356 ADAMTS7Q9UKP4 1686 aa10.49□□□□□ -0.73
CLK1-201ENST00000321356 KCNQ3O43525 872 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms