RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 Adcy5P84309 1262 aa13.74□□□□□ -0.21
Trim56-201ENSMUST00000054384 SltmQ8CH25 1031 aaKnown RBP13.74□□□□□ -0.21
Trim56-201ENSMUST00000054384 Api5O35841 504 aaKnown RBP13.74□□□□□ -0.21
Trim56-201ENSMUST00000054384 Sept11Q8C1B7 431 aaKnown RBP13.74□□□□□ -0.21
Trim56-201ENSMUST00000054384 Fermt1P59113 677 aa13.74□□□□□ -0.21
Trim56-201ENSMUST00000054384 Zbtb22Q9Z0G7 638 aa13.73□□□□□ -0.21
Trim56-201ENSMUST00000054384 Frat2Q8K025 231 aa13.73□□□□□ -0.21
Trim56-201ENSMUST00000054384 ZgpatQ8VDM1 511 aa13.73□□□□□ -0.21
Trim56-201ENSMUST00000054384 Sil1Q9EPK6 465 aa13.73□□□□□ -0.21
Trim56-201ENSMUST00000054384 Fam107bQ3TGF2 131 aa13.73□□□□□ -0.21
Trim56-201ENSMUST00000054384 Tmem67Q8BR76 992 aa13.73□□□□□ -0.21
Trim56-201ENSMUST00000054384 Ktn1Q61595 1327 aaKnown RBP13.73□□□□□ -0.21
Trim56-201ENSMUST00000054384 Rnf41Q8BH75 317 aa13.72□□□□□ -0.21
Trim56-201ENSMUST00000054384 E9QMW4 1145 aa13.72□□□□□ -0.21
Trim56-201ENSMUST00000054384 Ehbp1Q69ZW3 1231 aa13.72□□□□□ -0.21
Trim56-201ENSMUST00000054384 Znf653Q6YND2 615 aa13.72□□□□□ -0.21
Trim56-201ENSMUST00000054384 Znf394Q9Z1D9 521 aa13.72□□□□□ -0.21
Trim56-201ENSMUST00000054384 Sass6Q80UK7 654 aa13.72□□□□□ -0.21
Trim56-201ENSMUST00000054384 Tbc1d2bQ3U0J8 965 aa13.72□□□□□ -0.21
Trim56-201ENSMUST00000054384 ApobrQ8VBT6 942 aa13.72□□□□□ -0.21
Trim56-201ENSMUST00000054384 Bag4Q8CI61 457 aa13.72□□□□□ -0.21
Trim56-201ENSMUST00000054384 Rasal2E9PW37 1286 aa13.72□□□□□ -0.21
Trim56-201ENSMUST00000054384 Krt7Q9DCV7 457 aa13.72□□□□□ -0.21
Trim56-201ENSMUST00000054384 Slc7a3P70423 618 aa13.72□□□□□ -0.21
Trim56-201ENSMUST00000054384 EappQ5BU09 281 aa13.72□□□□□ -0.21
Trim56-201ENSMUST00000054384 Pik3r4Q8VD65 1358 aa13.71□□□□□ -0.21
Trim56-201ENSMUST00000054384 Sdc2P43407 202 aa13.71□□□□□ -0.21
Trim56-201ENSMUST00000054384 Limch1Q3UH68 1057 aa13.71□□□□□ -0.21
Trim56-201ENSMUST00000054384 Kiaa1524Q8BWY9 907 aa13.71□□□□□ -0.21
Trim56-201ENSMUST00000054384 Traf3ip1Q149C2 625 aa13.71□□□□□ -0.22
Trim56-201ENSMUST00000054384 Gbp7Q91Z40 638 aa13.71□□□□□ -0.22
Trim56-201ENSMUST00000054384 Zfp644E9QA22 1323 aa13.71□□□□□ -0.22
Trim56-201ENSMUST00000054384 Map3k5O35099 1380 aa13.71□□□□□ -0.22
Trim56-201ENSMUST00000054384 GpkowQ56A08 488 aa13.71□□□□□ -0.22
Trim56-201ENSMUST00000054384 Fam177a1Q8BR63 207 aa13.71□□□□□ -0.22
Trim56-201ENSMUST00000054384 Ccdc12Q8R344 166 aaKnown RBP13.71□□□□□ -0.22
Trim56-201ENSMUST00000054384 SfpqQ8VIJ6 699 aaKnown RBP13.71□□□□□ -0.22
Trim56-201ENSMUST00000054384 Ampd3O08739 766 aa13.7□□□□□ -0.22
Trim56-201ENSMUST00000054384 Ncapd3Q6ZQK0 1506 aa13.7□□□□□ -0.22
Trim56-201ENSMUST00000054384 Gjc1P28229 396 aa13.7□□□□□ -0.22
Trim56-201ENSMUST00000054384 EprsQ8CGC7 1512 aaKnown RBP13.7□□□□□ -0.22
Trim56-201ENSMUST00000054384 Krt23Q99PS0 422 aa13.7□□□□□ -0.22
Trim56-201ENSMUST00000054384 Stmn4P63042 189 aa13.7□□□□□ -0.22
Trim56-201ENSMUST00000054384 LyarQ08288 388 aaKnown RBP13.7□□□□□ -0.22
Trim56-201ENSMUST00000054384 Polr3dQ91WD1 398 aa13.7□□□□□ -0.22
Trim56-201ENSMUST00000054384 Prpf40aQ9R1C7 953 aaKnown RBP13.7□□□□□ -0.22
Trim56-201ENSMUST00000054384 Bicdl1A0JNT9 577 aa13.7□□□□□ -0.22
Trim56-201ENSMUST00000054384 Aldh1l1Q8R0Y6 902 aa13.7□□□□□ -0.22
Trim56-201ENSMUST00000054384 Wwc1Q5SXA9 1104 aa13.7□□□□□ -0.22
Trim56-201ENSMUST00000054384 Ccdc170D3YXL0 722 aa13.69□□□□□ -0.22
Trim56-201ENSMUST00000054384 Specc1Q5SXY1 1067 aa13.69□□□□□ -0.22
Trim56-201ENSMUST00000054384 Lrsam1Q80ZI6 727 aa13.69□□□□□ -0.22
Trim56-201ENSMUST00000054384 Diaph1O08808 1255 aa13.69□□□□□ -0.22
Trim56-201ENSMUST00000054384 Trap1aP19473 224 aa13.69□□□□□ -0.22
Trim56-201ENSMUST00000054384 Mrpl44Q9CY73 333 aaKnown RBP13.69□□□□□ -0.22
Trim56-201ENSMUST00000054384 Eif3bQ8JZQ9 803 aaKnown RBP13.69□□□□□ -0.22
Trim56-201ENSMUST00000054384 Smarca5Q91ZW3 1051 aaKnown RBP13.69□□□□□ -0.22
Trim56-201ENSMUST00000054384 Neurog2P70447 263 aa13.69□□□□□ -0.22
Trim56-201ENSMUST00000054384 Nsrp1Q5NCR9 542 aa13.69□□□□□ -0.22
Trim56-201ENSMUST00000054384 Spa17Q62252 149 aa13.69□□□□□ -0.22
Trim56-201ENSMUST00000054384 Ccdc66Q6NS45 935 aa13.69□□□□□ -0.22
Trim56-201ENSMUST00000054384 Bloc1s2Q9CWG9 143 aa13.69□□□□□ -0.22
Trim56-201ENSMUST00000054384 Q9D5Q8 446 aa13.69□□□□□ -0.22
Trim56-201ENSMUST00000054384 Ube2hP62257 183 aa13.69□□□□□ -0.22
Trim56-201ENSMUST00000054384 Tex19.1Q99MV2 351 aa13.69□□□□□ -0.22
Trim56-201ENSMUST00000054384 Bin1O08539 588 aaKnown RBP13.69□□□□□ -0.22
Trim56-201ENSMUST00000054384 Caprin2Q05A80 1031 aaKnown RBP13.69□□□□□ -0.22
Trim56-201ENSMUST00000054384 Hs2st1Q8R3H7 356 aa13.69□□□□□ -0.22
Trim56-201ENSMUST00000054384 Mnat1P51949 309 aa13.68□□□□□ -0.22
Trim56-201ENSMUST00000054384 Rbm27Q5SFM8 1060 aaKnown RBP13.68□□□□□ -0.22
Trim56-201ENSMUST00000054384 Apol7cQ8C6E1 369 aa13.68□□□□□ -0.22
Trim56-201ENSMUST00000054384 Mxra7Q9CZH7 178 aa13.68□□□□□ -0.22
Trim56-201ENSMUST00000054384 Uchl5Q9WUP7 329 aa13.68□□□□□ -0.22
Trim56-201ENSMUST00000054384 ArsiQ32KI9 573 aa13.68□□□□□ -0.22
Trim56-201ENSMUST00000054384 Gbp2Q9Z0E6 589 aa13.68□□□□□ -0.22
Trim56-201ENSMUST00000054384 Wdr63B2RY71 923 aa13.68□□□□□ -0.22
Trim56-201ENSMUST00000054384 Spg7Q3ULF4 781 aa13.68□□□□□ -0.22
Trim56-201ENSMUST00000054384 Stx6Q9JKK1 255 aa13.68□□□□□ -0.22
Trim56-201ENSMUST00000054384 Ppp1r42Q8R1Z4 357 aa13.68□□□□□ -0.22
Trim56-201ENSMUST00000054384 Baiap2l1Q9DBJ3 514 aa13.68□□□□□ -0.22
Trim56-201ENSMUST00000054384 Uso1Q9Z1Z0 959 aaKnown RBP13.68□□□□□ -0.22
Trim56-201ENSMUST00000054384 Camk4P08414 469 aa13.68□□□□□ -0.22
Trim56-201ENSMUST00000054384 Zscan29E9Q5B4 869 aa13.68□□□□□ -0.22
Trim56-201ENSMUST00000054384 Ltv1Q6NSQ7 470 aaKnown RBP13.68□□□□□ -0.22
Trim56-201ENSMUST00000054384 Ccdc6D3YZP9 469 aa13.68□□□□□ -0.22
Trim56-201ENSMUST00000054384 Mcm4P49717 862 aa13.68□□□□□ -0.22
Trim56-201ENSMUST00000054384 Gse1Q3U3C9 1213 aa13.68□□□□□ -0.22
Trim56-201ENSMUST00000054384 Apol7aB2RT54 418 aa13.67□□□□□ -0.22
Trim56-201ENSMUST00000054384 Brd3Q8K2F0 726 aaKnown RBP13.67□□□□□ -0.22
Trim56-201ENSMUST00000054384 Tbc1d7Q9D0K0 293 aa13.67□□□□□ -0.22
Trim56-201ENSMUST00000054384 Hmgb2P30681 210 aaKnown RBP13.67□□□□□ -0.22
Trim56-201ENSMUST00000054384 Cct2P80314 535 aaKnown RBP13.67□□□□□ -0.22
Trim56-201ENSMUST00000054384 Arhgap31A6X8Z5 1425 aa13.67□□□□□ -0.22
Trim56-201ENSMUST00000054384 Kif21aQ9QXL2 1672 aa13.67□□□□□ -0.22
Trim56-201ENSMUST00000054384 Smarcad1Q04692 1021 aa13.67□□□□□ -0.22
Trim56-201ENSMUST00000054384 Gng11P61953 73 aa13.67□□□□□ -0.22
Trim56-201ENSMUST00000054384 Elp1Q7TT37 1333 aaKnown RBP13.67□□□□□ -0.22
Trim56-201ENSMUST00000054384 TmpoQ61033 693 aaKnown RBP13.67□□□□□ -0.22
Trim56-201ENSMUST00000054384 Vps41Q5KU39 853 aa13.67□□□□□ -0.22
Trim56-201ENSMUST00000054384 Fam50bQ9WTJ8 334 aa13.67□□□□□ -0.22
Retrieved 100 of 22,080 RNA–protein pairs in 87.5 ms