Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Gm25239-201ENSMUST00000174915 86 ntBASIC43.79■■■■■ 4.6
Limch1Q3UH68 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC40.59■■■■■ 4.09
Limch1Q3UH68 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC40.15■■■■■ 4.02
Limch1Q3UH68 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC40.03■■■■■ 4
Limch1Q3UH68 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC38.99■■■■□ 3.83
Limch1Q3UH68 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC38.79■■■■□ 3.8
Limch1Q3UH68 Gm24109-201ENSMUST00000175489 103 ntBASIC38.05■■■■□ 3.68
Limch1Q3UH68 Gm15042-201ENSMUST00000120212 883 ntBASIC38.04■■■■□ 3.68
Limch1Q3UH68 Psd-208ENSMUST00000224556 2034 ntBASIC37.37■■■■□ 3.57
Limch1Q3UH68 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC37.24■■■■□ 3.55
Limch1Q3UH68 Gm15045-201ENSMUST00000117359 883 ntBASIC37.15■■■■□ 3.54
Limch1Q3UH68 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC37■■■■□ 3.51
Limch1Q3UH68 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC37■■■■□ 3.51
Limch1Q3UH68 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC36.87■■■■□ 3.49
Limch1Q3UH68 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC36.66■■■■□ 3.46
Limch1Q3UH68 Gm23366-201ENSMUST00000175022 89 ntBASIC36.55■■■■□ 3.44
Limch1Q3UH68 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC36.47■■■■□ 3.43
Limch1Q3UH68 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC36.42■■■■□ 3.42
Limch1Q3UH68 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC36.36■■■■□ 3.41
Limch1Q3UH68 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC35.99■■■■□ 3.35
Limch1Q3UH68 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC35.92■■■■□ 3.34
Limch1Q3UH68 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC35.9■■■■□ 3.34
Limch1Q3UH68 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC35.79■■■■□ 3.32
Limch1Q3UH68 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC35.77■■■■□ 3.32
Limch1Q3UH68 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC35.62■■■■□ 3.29
Limch1Q3UH68 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC35.62■■■■□ 3.29
Limch1Q3UH68 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC35.6■■■■□ 3.29
Limch1Q3UH68 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC35.58■■■■□ 3.29
Limch1Q3UH68 AC153911.1-202ENSMUST00000218534 1034 ntBASIC35.57■■■■□ 3.28
Limch1Q3UH68 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC35.54■■■■□ 3.28
Limch1Q3UH68 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC35.46■■■■□ 3.27
Limch1Q3UH68 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC35.44■■■■□ 3.26
Limch1Q3UH68 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC35.27■■■■□ 3.24
Limch1Q3UH68 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC35.22■■■■□ 3.23
Limch1Q3UH68 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC35.21■■■■□ 3.23
Limch1Q3UH68 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC35.2■■■■□ 3.23
Limch1Q3UH68 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC35.19■■■■□ 3.22
Limch1Q3UH68 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC35.18■■■■□ 3.22
Limch1Q3UH68 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC35.11■■■■□ 3.21
Limch1Q3UH68 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC35.1■■■■□ 3.21
Limch1Q3UH68 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC34.9■■■■□ 3.18
Limch1Q3UH68 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC34.81■■■■□ 3.16
Limch1Q3UH68 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC34.79■■■■□ 3.16
Limch1Q3UH68 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC34.77■■■■□ 3.16
Limch1Q3UH68 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC34.72■■■■□ 3.15
Limch1Q3UH68 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC34.7■■■■□ 3.15
Limch1Q3UH68 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC34.69■■■■□ 3.14
Limch1Q3UH68 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC34.67■■■■□ 3.14
Limch1Q3UH68 Gm25238-201ENSMUST00000174914 89 ntBASIC34.64■■■■□ 3.14
Limch1Q3UH68 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC34.49■■■■□ 3.11
Limch1Q3UH68 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC34.47■■■■□ 3.11
Limch1Q3UH68 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC34.36■■■■□ 3.09
Limch1Q3UH68 Gm10524-201ENSMUST00000181931 1893 ntBASIC34.24■■■■□ 3.07
Limch1Q3UH68 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC34.23■■■■□ 3.07
Limch1Q3UH68 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC34.14■■■■□ 3.06
Limch1Q3UH68 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC34.14■■■■□ 3.06
Limch1Q3UH68 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC34.12■■■■□ 3.05
Limch1Q3UH68 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC34.09■■■■□ 3.05
Limch1Q3UH68 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC33.98■■■■□ 3.03
Limch1Q3UH68 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC33.86■■■■□ 3.01
Limch1Q3UH68 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC33.76■■■□□ 2.99
Limch1Q3UH68 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC33.7■■■□□ 2.99
Limch1Q3UH68 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC33.65■■■□□ 2.98
Limch1Q3UH68 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC33.62■■■□□ 2.97
Limch1Q3UH68 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC33.58■■■□□ 2.97
Limch1Q3UH68 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC33.56■■■□□ 2.96
Limch1Q3UH68 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC33.56■■■□□ 2.96
Limch1Q3UH68 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC33.53■■■□□ 2.96
Limch1Q3UH68 CT025624.2-201ENSMUST00000223609 1909 ntBASIC33.47■■■□□ 2.95
Limch1Q3UH68 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC33.45■■■□□ 2.95
Limch1Q3UH68 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC33.41■■■□□ 2.94
Limch1Q3UH68 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC33.36■■■□□ 2.93
Limch1Q3UH68 Gm42596-201ENSMUST00000196305 1958 ntBASIC33.33■■■□□ 2.93
Limch1Q3UH68 Gm25262-201ENSMUST00000174934 133 ntBASIC33.32■■■□□ 2.92
Limch1Q3UH68 Gm27325-201ENSMUST00000175467 74 ntBASIC33.3■■■□□ 2.92
Limch1Q3UH68 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC33.3■■■□□ 2.92
Limch1Q3UH68 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC33.29■■■□□ 2.92
Limch1Q3UH68 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC33.28■■■□□ 2.92
Limch1Q3UH68 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC33.27■■■□□ 2.92
Limch1Q3UH68 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC33.22■■■□□ 2.91
Limch1Q3UH68 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC33.16■■■□□ 2.9
Limch1Q3UH68 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC33.09■■■□□ 2.89
Limch1Q3UH68 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC33.02■■■□□ 2.88
Limch1Q3UH68 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC32.94■■■□□ 2.86
Limch1Q3UH68 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC32.94■■■□□ 2.86
Limch1Q3UH68 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC32.9■■■□□ 2.86
Limch1Q3UH68 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC32.88■■■□□ 2.85
Limch1Q3UH68 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC32.87■■■□□ 2.85
Limch1Q3UH68 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC32.87■■■□□ 2.85
Limch1Q3UH68 Rab21-202ENSMUST00000218831 843 ntBASIC32.86■■■□□ 2.85
Limch1Q3UH68 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC32.83■■■□□ 2.85
Limch1Q3UH68 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC32.81■■■□□ 2.84
Limch1Q3UH68 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC32.79■■■□□ 2.84
Limch1Q3UH68 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC32.77■■■□□ 2.84
Limch1Q3UH68 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC32.76■■■□□ 2.83
Limch1Q3UH68 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
Limch1Q3UH68 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
Limch1Q3UH68 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC32.71■■■□□ 2.83
Limch1Q3UH68 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC32.7■■■□□ 2.83
Limch1Q3UH68 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC32.65■■■□□ 2.82
Retrieved 100 of 76,532 protein–RNA pairs in 14.6 ms