RNA–Protein interactions for RNA: YOR098C

NUP1, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP1, Length 3,231 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP1	YOR098C	PBP1	P53297	722 aa	Known RBP	6.26	□□□□□ -1.41
NUP1	YOR098C	APP1	P53933	587 aa		6.26	□□□□□ -1.41
NUP1	YOR098C	KCC4	P25389	1037 aa		6.25	□□□□□ -1.41
NUP1	YOR098C	FIR1	P40020	876 aa		6.25	□□□□□ -1.41
NUP1	YOR098C	BUL2	Q03758	920 aa	Known RBP	6.25	□□□□□ -1.41
NUP1	YOR098C	BUD20	Q08004	166 aa	Predicted RBP	6.25	□□□□□ -1.41
NUP1	YOR098C	SCC2	Q04002	1493 aa		6.25	□□□□□ -1.41
NUP1	YOR098C	TPD3	P31383	635 aa		6.25	□□□□□ -1.41
NUP1	YOR098C	RKM3	P38222	552 aa		6.25	□□□□□ -1.41
NUP1	YOR098C	GPP2	P40106	250 aa	Known RBP	6.25	□□□□□ -1.41
NUP1	YOR098C	RRN7	P40992	514 aa		6.25	□□□□□ -1.41
NUP1	YOR098C	MED1	Q12321	566 aa		6.25	□□□□□ -1.41
NUP1	YOR098C	TBS1	P38114	1094 aa		6.25	□□□□□ -1.41
NUP1	YOR098C	CCC2	P38995	1004 aa		6.25	□□□□□ -1.41
NUP1	YOR098C	PES4	P39684	611 aa		6.25	□□□□□ -1.41
NUP1	YOR098C	SNP1	Q00916	300 aa	Predicted RBP	6.25	□□□□□ -1.41
NUP1	YOR098C	NEW1	Q08972	1196 aa	Known RBP	6.25	□□□□□ -1.41
NUP1	YOR098C	STH1	P32597	1359 aa		6.24	□□□□□ -1.41
NUP1	YOR098C	RSM26	P47141	266 aa		6.24	□□□□□ -1.41
NUP1	YOR098C	MET13	P53128	600 aa		6.24	□□□□□ -1.41
NUP1	YOR098C	IRC3	Q06683	689 aa		6.24	□□□□□ -1.41
NUP1	YOR098C	TOM70	P07213	617 aa	Known RBP	6.24	□□□□□ -1.41
NUP1	YOR098C	HEM13	P11353	328 aa	Known RBP	6.24	□□□□□ -1.41
NUP1	YOR098C	URA1	P28272	314 aa	Predicted RBP	6.24	□□□□□ -1.41
NUP1	YOR098C	CHS3	P29465	1165 aa		6.24	□□□□□ -1.41
NUP1	YOR098C	DYS1	P38791	387 aa		6.24	□□□□□ -1.41
NUP1	YOR098C	MBP1	P39678	833 aa		6.24	□□□□□ -1.41
NUP1	YOR098C	QDR2	P40474	542 aa		6.24	□□□□□ -1.41
NUP1	YOR098C	INO1	P11986	533 aa		6.23	□□□□□ -1.41
NUP1	YOR098C	HBS1	P32769	611 aa	Known RBP	6.23	□□□□□ -1.41
NUP1	YOR098C	YKL133C	P36066	463 aa		6.23	□□□□□ -1.41
NUP1	YOR098C	HIS6	P40545	261 aa		6.23	□□□□□ -1.41
NUP1	YOR098C	VTC2	P43585	828 aa		6.23	□□□□□ -1.41
NUP1	YOR098C	LCB5	Q06147	687 aa	Known RBP	6.23	□□□□□ -1.41
NUP1	YOR098C	PSR1	Q07800	427 aa		6.23	□□□□□ -1.41
NUP1	YOR098C	MDS3	P53094	1487 aa		6.23	□□□□□ -1.41
NUP1	YOR098C	SEC23	P15303	768 aa	Known RBP	6.23	□□□□□ -1.41
NUP1	YOR098C	NIT2	P47016	307 aa		6.23	□□□□□ -1.41
NUP1	YOR098C	SQT1	P35184	431 aa		6.23	□□□□□ -1.41
NUP1	YOR098C	PEX28	P38848	579 aa		6.23	□□□□□ -1.41
NUP1	YOR098C	YJR096W	P47137	282 aa		6.23	□□□□□ -1.41
NUP1	YOR098C	YGL140C	P53120	1219 aa		6.23	□□□□□ -1.41
NUP1	YOR098C	YNL165W	P53891	406 aa		6.23	□□□□□ -1.41
NUP1	YOR098C	WTM2	Q12206	467 aa		6.23	□□□□□ -1.41
NUP1	YOR098C	POL1	P13382	1468 aa		6.22	□□□□□ -1.41
NUP1	YOR098C	RRN3	P36070	627 aa		6.22	□□□□□ -1.41
NUP1	YOR098C	PAN5	P38787	379 aa		6.22	□□□□□ -1.41
NUP1	YOR098C	JIP4	Q03361	876 aa		6.22	□□□□□ -1.41
NUP1	YOR098C	MSH6	Q03834	1242 aa		6.22	□□□□□ -1.41
NUP1	YOR098C	APE4	P38821	490 aa		6.22	□□□□□ -1.41
NUP1	YOR098C	SUM1	P46676	1062 aa		6.22	□□□□□ -1.41
NUP1	YOR098C	Q0182	Q9ZZW1	134 aa		6.22	□□□□□ -1.41
NUP1	YOR098C	AEP2	P22136	580 aa		6.21	□□□□□ -1.41
NUP1	YOR098C	DAL3	P32459	195 aa		6.21	□□□□□ -1.41
NUP1	YOR098C	FBP26	P32604	452 aa		6.21	□□□□□ -1.41
NUP1	YOR098C	ECM32	P32644	1121 aa	Known RBP	6.21	□□□□□ -1.41
NUP1	YOR098C	BSD2	P38356	321 aa		6.21	□□□□□ -1.41
NUP1	YOR098C	RVS167	P39743	482 aa	Known RBP	6.21	□□□□□ -1.41
NUP1	YOR098C	NPY1	P53164	384 aa		6.21	□□□□□ -1.41
NUP1	YOR098C	SIW14	P53965	281 aa		6.21	□□□□□ -1.41
NUP1	YOR098C	VPS30	Q02948	557 aa		6.21	□□□□□ -1.41
NUP1	YOR098C	CDC9	P04819	755 aa		6.21	□□□□□ -1.42
NUP1	YOR098C	IMP2'	P32351	346 aa		6.21	□□□□□ -1.42
NUP1	YOR098C	PRP19	P32523	503 aa	Known RBP	6.21	□□□□□ -1.42
NUP1	YOR098C	YBR284W	P38150	797 aa		6.21	□□□□□ -1.42
NUP1	YOR098C	UTP7	P40055	554 aa	Known RBP	6.21	□□□□□ -1.42
NUP1	YOR098C	DOT6	P40059	670 aa	Known RBP	6.21	□□□□□ -1.42
NUP1	YOR098C	ERR3	P42222	437 aa		6.21	□□□□□ -1.42
NUP1	YOR098C	DUG1	P43616	481 aa	Known RBP	6.21	□□□□□ -1.42
NUP1	YOR098C	YLR352W	Q06479	807 aa		6.21	□□□□□ -1.42
NUP1	YOR098C	YPL066W	Q12194	479 aa		6.21	□□□□□ -1.42
NUP1	YOR098C	GSY1	P23337	708 aa		6.21	□□□□□ -1.42
NUP1	YOR098C	PCL2	P25693	308 aa		6.21	□□□□□ -1.42
NUP1	YOR098C	ABZ1	P37254	787 aa	Predicted RBP	6.21	□□□□□ -1.42
NUP1	YOR098C	TMA108	P40462	946 aa		6.21	□□□□□ -1.42
NUP1	YOR098C	HOL1	P53389	586 aa		6.21	□□□□□ -1.42
NUP1	YOR098C	SPC19	Q03954	165 aa		6.21	□□□□□ -1.42
NUP1	YOR098C	SPS1	P08458	490 aa		6.2	□□□□□ -1.42
NUP1	YOR098C	SRD1	P09007	221 aa		6.2	□□□□□ -1.42
NUP1	YOR098C	RAD18	P10862	487 aa		6.2	□□□□□ -1.42
NUP1	YOR098C	ACA1	P39970	489 aa		6.2	□□□□□ -1.42
NUP1	YOR098C	UTP4	Q06679	776 aa	Known RBP	6.2	□□□□□ -1.42
NUP1	YOR098C	ESP1	Q03018	1630 aa		6.2	□□□□□ -1.42
NUP1	YOR098C	RAD53	P22216	821 aa		6.2	□□□□□ -1.42
NUP1	YOR098C	PRS1	P32895	427 aa	Known RBP	6.2	□□□□□ -1.42
NUP1	YOR098C	MEP3	P53390	489 aa		6.2	□□□□□ -1.42
NUP1	YOR098C	PHM6	Q05637	104 aa		6.2	□□□□□ -1.42
NUP1	YOR098C	OAF1	P39720	1047 aa	Predicted RBP	6.2	□□□□□ -1.42
NUP1	YOR098C	SAH1	P39954	449 aa	Known RBP	6.2	□□□□□ -1.42
NUP1	YOR098C	ROD1	Q02805	837 aa		6.2	□□□□□ -1.42
NUP1	YOR098C	MOD5	P07884	428 aa		6.19	□□□□□ -1.42
NUP1	YOR098C	MSS18	P08593	268 aa		6.19	□□□□□ -1.42
NUP1	YOR098C	NAB2	P32505	525 aa	Known RBP RIP-Chip data	6.19	□□□□□ -1.42	not detected
NUP1	YOR098C	NUP120	P35729	1037 aa		6.19	□□□□□ -1.42
NUP1	YOR098C	UBP6	P43593	499 aa	Known RBP	6.19	□□□□□ -1.42
NUP1	YOR098C	PEX13	P80667	386 aa		6.19	□□□□□ -1.42
NUP1	YOR098C	SDH5	Q08230	162 aa		6.19	□□□□□ -1.42
NUP1	YOR098C	PEP1	P32319	1579 aa		6.19	□□□□□ -1.42
NUP1	YOR098C	CYB2	P00175	591 aa		6.19	□□□□□ -1.42
NUP1	YOR098C	BEM3	P32873	1128 aa		6.19	□□□□□ -1.42

Retrieved 100 of 5,963 RNA–protein pairs in 20.5 ms