RNA–Protein interactions for RNA: YLR058C

SHM2, Transcript of Cytosolic serine hydroxymethyltransferase, yeast

Gene SHM2, Length 1,410 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHM2	YLR058C	YPT11	P48559	417 aa		11.72	□□□□□ -0.53
SHM2	YLR058C	CTR1	P49573	406 aa		11.72	□□□□□ -0.53
SHM2	YLR058C	ORC4	P54791	529 aa		11.72	□□□□□ -0.53
SHM2	YLR058C	CDC19	P00549	500 aa	Known RBP	11.71	□□□□□ -0.53
SHM2	YLR058C	ILV1	P00927	576 aa	Known RBP	11.71	□□□□□ -0.53
SHM2	YLR058C	SES1	P07284	462 aa	Known RBP	11.71	□□□□□ -0.53
SHM2	YLR058C	GSY1	P23337	708 aa		11.71	□□□□□ -0.53
SHM2	YLR058C	BMH1	P29311	267 aa	Known RBP	11.71	□□□□□ -0.53
SHM2	YLR058C	YGR125W	P53273	1036 aa		11.71	□□□□□ -0.53
SHM2	YLR058C	WHI4	Q07655	649 aa	Known RBP	11.71	□□□□□ -0.53
SHM2	YLR058C	TY3A-G	Q12173	290 aa		11.71	□□□□□ -0.53
SHM2	YLR058C	TY3A-I	Q99219	290 aa		11.71	□□□□□ -0.53
SHM2	YLR058C	TRS33	Q99394	268 aa		11.71	□□□□□ -0.53
SHM2	YLR058C	HIS4	P00815	799 aa	Known RBP	11.7	□□□□□ -0.54
SHM2	YLR058C	YKT6	P36015	200 aa	Known RBP	11.7	□□□□□ -0.54
SHM2	YLR058C	ISW1	P38144	1129 aa		11.7	□□□□□ -0.54
SHM2	YLR058C	DUS1	P53759	423 aa	Known RBP	11.7	□□□□□ -0.54
SHM2	YLR058C	PTA1	Q01329	785 aa	Predicted RBP	11.7	□□□□□ -0.54
SHM2	YLR058C	MFM1	Q02783	413 aa		11.7	□□□□□ -0.54
SHM2	YLR058C	BUL2	Q03758	920 aa	Known RBP	11.7	□□□□□ -0.54
SHM2	YLR058C	TY1B-A	O13527	1196 aa	Known RBP	11.69	□□□□□ -0.54
SHM2	YLR058C	VMS1	Q04311	632 aa	Known RBP	11.69	□□□□□ -0.54
SHM2	YLR058C	DUS4	Q06063	367 aa		11.69	□□□□□ -0.54
SHM2	YLR058C	ISA1	Q07821	250 aa	Predicted RBP	11.69	□□□□□ -0.54
SHM2	YLR058C	KNS1	P32350	737 aa	Predicted RBP	11.69	□□□□□ -0.54
SHM2	YLR058C	NPR3	P38742	1146 aa		11.69	□□□□□ -0.54
SHM2	YLR058C	VPS29	P38759	282 aa		11.69	□□□□□ -0.54
SHM2	YLR058C	UBA2	P52488	636 aa		11.69	□□□□□ -0.54
SHM2	YLR058C	YLR225C	Q05948	407 aa	Known RBP	11.69	□□□□□ -0.54
SHM2	YLR058C	ADY4	Q05955	493 aa		11.69	□□□□□ -0.54
SHM2	YLR058C	ERP3	Q12403	225 aa		11.69	□□□□□ -0.54
SHM2	YLR058C	SMC6	Q12749	1114 aa		11.69	□□□□□ -0.54
SHM2	YLR058C	RPL22A	P05749	121 aa	Known RBP	11.68	□□□□□ -0.54
SHM2	YLR058C	SRP40	P32583	406 aa	Predicted RBP	11.68	□□□□□ -0.54
SHM2	YLR058C	UBP11	P36026	717 aa		11.68	□□□□□ -0.54
SHM2	YLR058C	THI6	P41835	540 aa		11.68	□□□□□ -0.54
SHM2	YLR058C	SLD5	Q03406	294 aa		11.68	□□□□□ -0.54
SHM2	YLR058C	SGD1	Q06132	899 aa		11.68	□□□□□ -0.54
SHM2	YLR058C	TKL1	P23254	680 aa	Known RBP	11.67	□□□□□ -0.54
SHM2	YLR058C	PET10	P36139	283 aa		11.67	□□□□□ -0.54
SHM2	YLR058C	ATG1	P53104	897 aa		11.67	□□□□□ -0.54
SHM2	YLR058C	YGL039W	P53183	348 aa	Known RBP	11.67	□□□□□ -0.54
SHM2	YLR058C	CBK1	P53894	756 aa		11.67	□□□□□ -0.54
SHM2	YLR058C	YLH47	Q06493	454 aa		11.67	□□□□□ -0.54
SHM2	YLR058C	PSR2	Q07949	397 aa		11.67	□□□□□ -0.54
SHM2	YLR058C	SRF1	Q12516	437 aa		11.67	□□□□□ -0.54
SHM2	YLR058C	FOB1	O13329	566 aa		11.66	□□□□□ -0.54
SHM2	YLR058C	ESS1	P22696	170 aa		11.66	□□□□□ -0.54
SHM2	YLR058C	CDC15	P27636	974 aa		11.66	□□□□□ -0.54
SHM2	YLR058C	REG2	P38232	338 aa		11.66	□□□□□ -0.54
SHM2	YLR058C	BRE2	P43132	505 aa		11.66	□□□□□ -0.54
SHM2	YLR058C	FKS1	P38631	1876 aa	Known RBP	11.65	□□□□□ -0.54
SHM2	YLR058C	YEL076C-A	P0CX16	216 aa		11.65	□□□□□ -0.54
SHM2	YLR058C	YLR464W	P0CX17	216 aa		11.65	□□□□□ -0.54
SHM2	YLR058C	CLC1	P17891	233 aa		11.65	□□□□□ -0.54
SHM2	YLR058C	CKA2	P19454	339 aa		11.65	□□□□□ -0.54
SHM2	YLR058C	HIR1	P32479	840 aa		11.65	□□□□□ -0.54
SHM2	YLR058C	YEL076C	P39971	216 aa		11.65	□□□□□ -0.54
SHM2	YLR058C	GPD2	P41911	440 aa	Known RBP	11.65	□□□□□ -0.54
SHM2	YLR058C	ROG3	P43602	733 aa		11.65	□□□□□ -0.54
SHM2	YLR058C	CNM67	P53865	581 aa	Known RBP	11.65	□□□□□ -0.54
SHM2	YLR058C	CLB5	P30283	435 aa		11.64	□□□□□ -0.55
SHM2	YLR058C	PGM1	P33401	570 aa	Known RBP	11.64	□□□□□ -0.55
SHM2	YLR058C	DBP7	P36120	742 aa	Known RBP	11.64	□□□□□ -0.55
SHM2	YLR058C	RKM3	P38222	552 aa		11.64	□□□□□ -0.55
SHM2	YLR058C	RSC1	P53236	928 aa		11.64	□□□□□ -0.55
SHM2	YLR058C	DIP5	P53388	608 aa		11.64	□□□□□ -0.55
SHM2	YLR058C	PGA2	P53903	129 aa		11.64	□□□□□ -0.55
SHM2	YLR058C	PHM6	Q05637	104 aa		11.64	□□□□□ -0.55
SHM2	YLR058C	PGK1	P00560	416 aa	Known RBP	11.63	□□□□□ -0.55
SHM2	YLR058C	SUP45	P12385	437 aa	Known RBP	11.63	□□□□□ -0.55
SHM2	YLR058C	SAC6	P32599	642 aa	Known RBP	11.63	□□□□□ -0.55
SHM2	YLR058C	SEC8	P32855	1065 aa		11.63	□□□□□ -0.55
SHM2	YLR058C	RRM3	P38766	723 aa		11.63	□□□□□ -0.55
SHM2	YLR058C	VTC2	P43585	828 aa		11.63	□□□□□ -0.55
SHM2	YLR058C	FUS2	Q05670	677 aa		11.63	□□□□□ -0.55
SHM2	YLR058C	ISY1	P21374	235 aa	Predicted RBP	11.62	□□□□□ -0.55
SHM2	YLR058C	SUV3	P32580	737 aa		11.62	□□□□□ -0.55
SHM2	YLR058C	FYV10	P40492	516 aa		11.62	□□□□□ -0.55
SHM2	YLR058C	UBP15	P50101	1230 aa		11.62	□□□□□ -0.55
SHM2	YLR058C	YMR321C	Q04898	105 aa		11.62	□□□□□ -0.55
SHM2	YLR058C	CRD1	Q07560	283 aa		11.62	□□□□□ -0.55
SHM2	YLR058C	CLN3	P13365	580 aa		11.61	□□□□□ -0.55
SHM2	YLR058C	GSY2	P27472	705 aa		11.61	□□□□□ -0.55
SHM2	YLR058C	RGT1	P32862	1170 aa		11.61	□□□□□ -0.55
SHM2	YLR058C	TFC4	P33339	1025 aa		11.61	□□□□□ -0.55
SHM2	YLR058C	SIP3	P38717	1229 aa		11.61	□□□□□ -0.55
SHM2	YLR058C	MXR1	P40029	184 aa		11.61	□□□□□ -0.55
SHM2	YLR058C	RRD1	P40454	393 aa	Known RBP	11.61	□□□□□ -0.55
SHM2	YLR058C	MSC6	Q08818	692 aa	Known RBP	11.61	□□□□□ -0.55
SHM2	YLR058C	YDR461C-A	Q2V2P7	80 aa		11.61	□□□□□ -0.55
SHM2	YLR058C	MIP1	P15801	1254 aa		11.6	□□□□□ -0.55
SHM2	YLR058C	ATE1	P16639	503 aa		11.6	□□□□□ -0.55
SHM2	YLR058C	PRP22	P24384	1145 aa	Known RBP	11.6	□□□□□ -0.55
SHM2	YLR058C	YUR1	P26725	428 aa		11.6	□□□□□ -0.55
SHM2	YLR058C	PIH1	P38768	344 aa		11.6	□□□□□ -0.55
SHM2	YLR058C	ULP2	P40537	1034 aa	Predicted RBP	11.6	□□□□□ -0.55
SHM2	YLR058C	HUL5	P53119	910 aa		11.6	□□□□□ -0.55
SHM2	YLR058C	SSL2	Q00578	843 aa		11.6	□□□□□ -0.55
SHM2	YLR058C	SRD1	P09007	221 aa		11.6	□□□□□ -0.55

Retrieved 100 of 5,963 RNA–protein pairs in 33.3 ms