RNA–Protein interactions for RNA: YKR098C

UBP11, Transcript of Ubiquitin-specific protease, yeast

Gene UBP11, Length 2,154 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP11	YKR098C	MAL11	P53048	616 aa		3.01	□□□□□ -1.93
UBP11	YKR098C	NPL3	Q01560	414 aa	Known RBP RIP-Chip data	3.01	□□□□□ -1.93	not detected
UBP11	YKR098C	YDL124W	Q07551	312 aa	Known RBP	3.01	□□□□□ -1.93
UBP11	YKR098C	NTG2	Q08214	380 aa		3.01	□□□□□ -1.93
UBP11	YKR098C	GNT1	Q12096	491 aa		3.01	□□□□□ -1.93
UBP11	YKR098C	PTC5	Q12511	572 aa		3.01	□□□□□ -1.93
UBP11	YKR098C	GPM1	P00950	247 aa	Known RBP	3	□□□□□ -1.93
UBP11	YKR098C	ERS1	P17261	260 aa		3	□□□□□ -1.93
UBP11	YKR098C	YAR028W	P39548	234 aa		3	□□□□□ -1.93
UBP11	YKR098C	HSV2	P50079	448 aa	Predicted RBP	3	□□□□□ -1.93
UBP11	YKR098C	ALG6	Q12001	544 aa	Known RBP	3	□□□□□ -1.93
UBP11	YKR098C	HBN1	Q96VH4	193 aa		3	□□□□□ -1.93
UBP11	YKR098C	TY4B-P	A0A0B7P3V8	1104 aa		3	□□□□□ -1.93
UBP11	YKR098C	TOP3	P13099	656 aa		3	□□□□□ -1.93
UBP11	YKR098C	RPL8A	P17076	256 aa	Known RBP	3	□□□□□ -1.93
UBP11	YKR098C	SRM1	P21827	482 aa		3	□□□□□ -1.93
UBP11	YKR098C	GBP2	P25555	427 aa	Known RBP RIP-Chip data	3	□□□□□ -1.93	not detected
UBP11	YKR098C	CRP1	P38845	465 aa	Known RBP	3	□□□□□ -1.93
UBP11	YKR098C	CCC2	P38995	1004 aa		3	□□□□□ -1.93
UBP11	YKR098C	YGR045C	P53229	120 aa		3	□□□□□ -1.93
UBP11	YKR098C	UGO1	Q03327	502 aa		3	□□□□□ -1.93
UBP11	YKR098C	LAP2	Q10740	671 aa		3	□□□□□ -1.93
UBP11	YKR098C	ELG1	Q12050	791 aa		3	□□□□□ -1.93
UBP11	YKR098C	TY4A-H	Q6Q5P6	413 aa		3	□□□□□ -1.93
UBP11	YKR098C	SAC7	P17121	654 aa		2.99	□□□□□ -1.93
UBP11	YKR098C	PGM2	P37012	569 aa	Known RBP	2.99	□□□□□ -1.93
UBP11	YKR098C	GDH3	P39708	457 aa		2.99	□□□□□ -1.93
UBP11	YKR098C	VPS53	P47061	822 aa		2.99	□□□□□ -1.93
UBP11	YKR098C	ZDS1	P50111	915 aa	Known RBP	2.99	□□□□□ -1.93
UBP11	YKR098C	YNR029C	P53729	429 aa	Known RBP	2.99	□□□□□ -1.93
UBP11	YKR098C	CAF120	P53836	1060 aa		2.99	□□□□□ -1.93
UBP11	YKR098C	AVO1	Q08236	1176 aa		2.99	□□□□□ -1.93
UBP11	YKR098C	YLL054C	Q12244	843 aa		2.99	□□□□□ -1.93
UBP11	YKR098C	ADR1	P07248	1323 aa		2.98	□□□□□ -1.93
UBP11	YKR098C	YER152C	P10356	443 aa		2.98	□□□□□ -1.93
UBP11	YKR098C	CDC11	P32458	415 aa		2.98	□□□□□ -1.93
UBP11	YKR098C	ALG14	P38242	237 aa		2.98	□□□□□ -1.93
UBP11	YKR098C	QNS1	P38795	714 aa	Known RBP	2.98	□□□□□ -1.93
UBP11	YKR098C	PNT1	P38969	423 aa		2.98	□□□□□ -1.93
UBP11	YKR098C	YEN1	P40028	759 aa		2.98	□□□□□ -1.93
UBP11	YKR098C	GUS1	P46655	708 aa	Known RBP RIP-Chip data	2.98	□□□□□ -1.93	not detected
UBP11	YKR098C	YJR008W	P47085	338 aa		2.98	□□□□□ -1.93
UBP11	YKR098C	YMR074C	Q04773	145 aa		2.98	□□□□□ -1.93
UBP11	YKR098C	DBP2	P24783	546 aa	Known RBP	2.98	□□□□□ -1.93
UBP11	YKR098C	MAE1	P36013	669 aa	Known RBP	2.98	□□□□□ -1.93
UBP11	YKR098C	YBR284W	P38150	797 aa		2.98	□□□□□ -1.93
UBP11	YKR098C	HSE1	P38753	452 aa		2.98	□□□□□ -1.93
UBP11	YKR098C	SIT1	P39980	628 aa		2.98	□□□□□ -1.93
UBP11	YKR098C	RSA3	Q05942	220 aa	Known RBP	2.98	□□□□□ -1.93
UBP11	YKR098C	SPP382	Q06411	708 aa	Predicted RBP	2.98	□□□□□ -1.93
UBP11	YKR098C	YDR306C	Q06640	478 aa		2.98	□□□□□ -1.93
UBP11	YKR098C	GIC2	Q06648	383 aa		2.98	□□□□□ -1.93
UBP11	YKR098C	YPL260W	Q08977	551 aa		2.98	□□□□□ -1.93
UBP11	YKR098C	RPL11A	P0C0W9	174 aa	Known RBP	2.97	□□□□□ -1.93
UBP11	YKR098C	RET1	P22276	1149 aa	Known RBP	2.97	□□□□□ -1.93
UBP11	YKR098C	NFS1	P25374	497 aa		2.97	□□□□□ -1.93
UBP11	YKR098C	KIP1	P28742	1111 aa		2.97	□□□□□ -1.93
UBP11	YKR098C	PEX6	P33760	1030 aa		2.97	□□□□□ -1.93
UBP11	YKR098C	UBP6	P43593	499 aa	Known RBP	2.97	□□□□□ -1.93
UBP11	YKR098C	KIP3	P53086	805 aa	Known RBP	2.97	□□□□□ -1.93
UBP11	YKR098C	ELA1	P53861	379 aa	Predicted RBP	2.97	□□□□□ -1.93
UBP11	YKR098C	TFB2	Q02939	513 aa		2.97	□□□□□ -1.93
UBP11	YKR098C	YOR223W	Q12015	292 aa		2.97	□□□□□ -1.93
UBP11	YKR098C	RPL11B	Q3E757	174 aa	Predicted RBP	2.97	□□□□□ -1.93
UBP11	YKR098C	MDM12	Q92328	271 aa		2.97	□□□□□ -1.93
UBP11	YKR098C	NHA1	Q99271	985 aa		2.97	□□□□□ -1.93
UBP11	YKR098C	TOM70	P07213	617 aa	Known RBP	2.97	□□□□□ -1.93
UBP11	YKR098C	MSD1	P15179	658 aa	Known RBP	2.97	□□□□□ -1.93
UBP11	YKR098C	MEF1	P25039	761 aa		2.97	□□□□□ -1.93
UBP11	YKR098C	AAR2	P32357	355 aa	Predicted RBP	2.97	□□□□□ -1.93
UBP11	YKR098C	SFP1	P32432	683 aa		2.97	□□□□□ -1.93
UBP11	YKR098C	PET10	P36139	283 aa		2.97	□□□□□ -1.93
UBP11	YKR098C	GEM1	P39722	662 aa		2.97	□□□□□ -1.93
UBP11	YKR098C	JJJ3	P47138	172 aa		2.97	□□□□□ -1.93
UBP11	YKR098C	TPO2	P53283	614 aa		2.97	□□□□□ -1.93
UBP11	YKR098C	DSE4	P53753	1117 aa		2.97	□□□□□ -1.93
UBP11	YKR098C	ATG13	Q06628	738 aa		2.97	□□□□□ -1.93
UBP11	YKR098C	SPO21	Q12411	609 aa		2.97	□□□□□ -1.93
UBP11	YKR098C	MXR1	P40029	184 aa		2.96	□□□□□ -1.94
UBP11	YKR098C	NCE103	P53615	221 aa		2.96	□□□□□ -1.94
UBP11	YKR098C	BUL2	Q03758	920 aa	Known RBP	2.96	□□□□□ -1.94
UBP11	YKR098C	DOT1	Q04089	582 aa	Known RBP	2.96	□□□□□ -1.94
UBP11	YKR098C	DUS3	Q06053	668 aa	Known RBP	2.96	□□□□□ -1.94
UBP11	YKR098C	YDL176W	Q12027	708 aa		2.96	□□□□□ -1.94
UBP11	YKR098C	YPR071W	Q12346	211 aa		2.96	□□□□□ -1.94
UBP11	YKR098C	AFR1	P33304	620 aa		2.95	□□□□□ -1.94
UBP11	YKR098C	DOM34	P33309	386 aa		2.95	□□□□□ -1.94
UBP11	YKR098C	NNK1	P36003	928 aa		2.95	□□□□□ -1.94
UBP11	YKR098C	GPB2	P39717	880 aa		2.95	□□□□□ -1.94
UBP11	YKR098C	YLR257W	Q06146	321 aa	Known RBP	2.95	□□□□□ -1.94
UBP11	YKR098C	PPH3	P32345	308 aa		2.95	□□□□□ -1.94
UBP11	YKR098C	SMY2	P32909	740 aa	Known RBP	2.95	□□□□□ -1.94
UBP11	YKR098C	RTS3	P53289	263 aa		2.95	□□□□□ -1.94
UBP11	YKR098C	YNL193W	P53870	558 aa		2.95	□□□□□ -1.94
UBP11	YKR098C	CDC12	P32468	407 aa	Known RBP	2.94	□□□□□ -1.94
UBP11	YKR098C	SCT1	P32784	759 aa		2.94	□□□□□ -1.94
UBP11	YKR098C	SLA2	P33338	968 aa		2.94	□□□□□ -1.94
UBP11	YKR098C	YKL151C	P36059	337 aa		2.94	□□□□□ -1.94
UBP11	YKR098C	PAF1	P38351	445 aa		2.94	□□□□□ -1.94
UBP11	YKR098C	RRM3	P38766	723 aa		2.94	□□□□□ -1.94

Retrieved 100 of 5,963 RNA–protein pairs in 86.6 ms