RNA–Protein interactions for RNA: YDL077C

VAM6, Transcript of Subunit of the HOPS endocytic tethering complex, yeastyeast

Gene VAM6, Length 3,150 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VAM6YDL077C YRF1-1P0CX20 1796 aa1.2□□□□□ -2.22
VAM6YDL077C YRF1-5P0CX21 1796 aa1.2□□□□□ -2.22
VAM6YDL077C YRF1-8P0CX22 1796 aa1.2□□□□□ -2.22
VAM6YDL077C KRE5P22023 1365 aa1.2□□□□□ -2.22
VAM6YDL077C RSF2P46974 1380 aa1.2□□□□□ -2.22
VAM6YDL077C VTH2P40890 1549 aa1.2□□□□□ -2.22
VAM6YDL077C NUP145P49687 1317 aa1.2□□□□□ -2.22
VAM6YDL077C TY1B-JR2P47100 1755 aaKnown RBP1.2□□□□□ -2.22
VAM6YDL077C TY1B-ER2Q03619 1755 aa1.2□□□□□ -2.22
VAM6YDL077C TY1B-MR1Q04214 1755 aa1.2□□□□□ -2.22
VAM6YDL077C TY1B-MR2Q04670 1755 aaKnown RBP1.2□□□□□ -2.22
VAM6YDL077C TY1B-LR1Q12088 1755 aaKnown RBP1.2□□□□□ -2.22
VAM6YDL077C TY1B-NL1Q12112 1755 aa1.2□□□□□ -2.22
VAM6YDL077C TY1B-GR1Q12141 1755 aa1.2□□□□□ -2.22
VAM6YDL077C TY1B-BLQ12490 1755 aa1.2□□□□□ -2.22
VAM6YDL077C REP1P03871 373 aa1.2□□□□□ -2.22
VAM6YDL077C RPP1AP05318 106 aaPredicted RBP1.2□□□□□ -2.22
VAM6YDL077C ADE3P07245 946 aaKnown RBP1.2□□□□□ -2.22
VAM6YDL077C PET122P10355 254 aa1.2□□□□□ -2.22
VAM6YDL077C PDI1P17967 522 aaKnown RBP1.2□□□□□ -2.22
VAM6YDL077C HCA4P20448 770 aaKnown RBP1.2□□□□□ -2.22
VAM6YDL077C SPT5P27692 1063 aaKnown RBP1.2□□□□□ -2.22
VAM6YDL077C RPN2P32565 945 aaKnown RBP1.2□□□□□ -2.22
VAM6YDL077C YKL091CP33324 310 aaKnown RBP1.2□□□□□ -2.22
VAM6YDL077C SAS3P34218 831 aa1.2□□□□□ -2.22
VAM6YDL077C SEG2P34250 1132 aa1.2□□□□□ -2.22
VAM6YDL077C CPR5P35176 225 aa1.2□□□□□ -2.22
VAM6YDL077C BLI1P35727 113 aa1.2□□□□□ -2.22
VAM6YDL077C RRP14P36080 434 aaKnown RBP1.2□□□□□ -2.22
VAM6YDL077C ESL2P36168 1195 aa1.2□□□□□ -2.22
VAM6YDL077C MRPL40P36534 297 aa1.2□□□□□ -2.22
VAM6YDL077C ATG14P38270 344 aa1.2□□□□□ -2.22
VAM6YDL077C AMN1P38285 549 aaPredicted RBP1.2□□□□□ -2.22
VAM6YDL077C SEC31P38968 1273 aaKnown RBP1.2□□□□□ -2.22
VAM6YDL077C SHC1P39000 512 aa1.2□□□□□ -2.22
VAM6YDL077C BUD16P39988 312 aa1.2□□□□□ -2.22
VAM6YDL077C SDS3P40505 327 aa1.2□□□□□ -2.22
VAM6YDL077C IRC24P40580 263 aa1.2□□□□□ -2.22
VAM6YDL077C LSB6P42951 607 aa1.2□□□□□ -2.22
VAM6YDL077C GCN20P43535 752 aaKnown RBP1.2□□□□□ -2.22
VAM6YDL077C IES1P43579 692 aa1.2□□□□□ -2.22
VAM6YDL077C IOC3P43596 787 aa1.2□□□□□ -2.22
VAM6YDL077C NUP84P52891 726 aa1.2□□□□□ -2.22
VAM6YDL077C PAP2P53632 584 aaKnown RBP1.2□□□□□ -2.22
VAM6YDL077C RCF1Q03713 159 aa1.2□□□□□ -2.22
VAM6YDL077C SPN1Q06505 410 aaPredicted RBP1.2□□□□□ -2.22
VAM6YDL077C GPN2Q08726 347 aaPredicted RBP1.2□□□□□ -2.22
VAM6YDL077C RPO21P04050 1733 aaKnown RBP1.2□□□□□ -2.22
VAM6YDL077C RPO41P13433 1351 aaKnown RBP1.2□□□□□ -2.22
VAM6YDL077C PDR18P53756 1333 aa1.19□□□□□ -2.22
VAM6YDL077C MAK16P10962 306 aaPredicted RBP1.19□□□□□ -2.22
VAM6YDL077C HMG1P12683 1054 aa1.19□□□□□ -2.22
VAM6YDL077C SRS2P12954 1174 aa1.19□□□□□ -2.22
VAM6YDL077C NMT1P14743 455 aa1.19□□□□□ -2.22
VAM6YDL077C RPB4P20433 221 aaPredicted RBP1.19□□□□□ -2.22
VAM6YDL077C ITR2P30606 609 aa1.19□□□□□ -2.22
VAM6YDL077C VPH2P32341 215 aa1.19□□□□□ -2.22
VAM6YDL077C RPC34P32910 317 aa1.19□□□□□ -2.22
VAM6YDL077C SWE1P32944 819 aa1.19□□□□□ -2.22
VAM6YDL077C COY1P34237 679 aa1.19□□□□□ -2.22
VAM6YDL077C KDX1P36005 433 aa1.19□□□□□ -2.22
VAM6YDL077C RFT1P38206 574 aaPredicted RBP1.19□□□□□ -2.22
VAM6YDL077C LAM1P38851 1228 aa1.19□□□□□ -2.22
VAM6YDL077C YHR218WP38899 603 aa1.19□□□□□ -2.22
VAM6YDL077C BEM4P39011 633 aa1.19□□□□□ -2.22
VAM6YDL077C YHB1P39676 399 aaKnown RBP1.19□□□□□ -2.22
VAM6YDL077C SER3P40054 469 aa1.19□□□□□ -2.22
VAM6YDL077C UTP7P40055 554 aaKnown RBP1.19□□□□□ -2.22
VAM6YDL077C AIM20P40451 204 aa1.19□□□□□ -2.22
VAM6YDL077C VID28P40547 921 aa1.19□□□□□ -2.22
VAM6YDL077C MTR4P47047 1073 aaKnown RBP1.19□□□□□ -2.22
VAM6YDL077C KIP3P53086 805 aaKnown RBP1.19□□□□□ -2.22
VAM6YDL077C MON1P53129 644 aa1.19□□□□□ -2.22
VAM6YDL077C ORM1P53224 222 aa1.19□□□□□ -2.22
VAM6YDL077C RSC1P53236 928 aa1.19□□□□□ -2.22
VAM6YDL077C ECM11Q04110 302 aa1.19□□□□□ -2.22
VAM6YDL077C UBX2Q04228 584 aa1.19□□□□□ -2.22
VAM6YDL077C COG4Q06096 861 aa1.19□□□□□ -2.22
VAM6YDL077C ISR1Q06098 443 aaKnown RBP1.19□□□□□ -2.22
VAM6YDL077C YPR172WQ06608 200 aa1.19□□□□□ -2.22
VAM6YDL077C YPR084WQ06821 456 aa1.19□□□□□ -2.22
VAM6YDL077C FRA1Q07825 749 aa1.19□□□□□ -2.22
VAM6YDL077C SGT2Q12118 346 aaKnown RBP1.19□□□□□ -2.22
VAM6YDL077C YDR215CQ12240 137 aa1.19□□□□□ -2.22
VAM6YDL077C STB3Q12427 513 aa1.19□□□□□ -2.22
VAM6YDL077C SMC6Q12749 1114 aa1.19□□□□□ -2.22
VAM6YDL077C YBL111CQ3E7Y5 667 aa1.19□□□□□ -2.22
VAM6YDL077C BCK1Q01389 1478 aa1.19□□□□□ -2.22
VAM6YDL077C TUS1Q06412 1307 aa1.19□□□□□ -2.22
VAM6YDL077C RNR2P09938 399 aaKnown RBP1.19□□□□□ -2.22
VAM6YDL077C MET4P32389 672 aa1.19□□□□□ -2.22
VAM6YDL077C CNS1P33313 385 aa1.19□□□□□ -2.22
VAM6YDL077C HSP78P33416 811 aa1.19□□□□□ -2.22
VAM6YDL077C PXA2P34230 853 aa1.19□□□□□ -2.22
VAM6YDL077C LHS1P36016 881 aa1.19□□□□□ -2.22
VAM6YDL077C RTS1P38903 757 aa1.19□□□□□ -2.22
VAM6YDL077C SPC72P39723 622 aa1.19□□□□□ -2.22
VAM6YDL077C KAP123P40069 1113 aaKnown RBP1.19□□□□□ -2.22
VAM6YDL077C SIP5P40210 489 aaKnown RBP1.19□□□□□ -2.22
VAM6YDL077C YTA6P40328 754 aa1.19□□□□□ -2.22
Retrieved 100 of 5,963 RNA–protein pairs in 41.6 ms