RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 GJD4Q96KN9 370 aaPredicted RBP18.28■□□□□ 0.52
CLN3-242ENST00000635958 DDX54Q8TDD1 881 aaKnown RBP18.28■□□□□ 0.52
CLN3-242ENST00000635958 PPP4R2Q9NY27 417 aa18.28■□□□□ 0.52
CLN3-242ENST00000635958 ONECUT3O60422 494 aaPredicted RBP18.27■□□□□ 0.52
CLN3-242ENST00000635958 DDB1Q16531 1140 aa18.27■□□□□ 0.52
CLN3-242ENST00000635958 SLC52A2Q9HAB3 445 aa18.27■□□□□ 0.52
CLN3-242ENST00000635958 TSPYL4Q9UJ04 414 aa18.27■□□□□ 0.52
CLN3-242ENST00000635958 RNF123Q5XPI4 1314 aa18.27■□□□□ 0.51
CLN3-242ENST00000635958 ERVV-2B6SEH9 535 aa18.26■□□□□ 0.51
CLN3-242ENST00000635958 ZNF772Q68DY9 489 aaPredicted RBP18.26■□□□□ 0.51
CLN3-242ENST00000635958 MRC1P22897 1456 aa18.26■□□□□ 0.51
CLN3-242ENST00000635958 FAM98CQ17RN3 349 aaKnown RBP18.26■□□□□ 0.51
CLN3-242ENST00000635958 MIS18AQ9NYP9 233 aa18.26■□□□□ 0.51
CLN3-242ENST00000635958 SIPA1L3O60292 1781 aaPredicted RBP18.25■□□□□ 0.51
CLN3-242ENST00000635958 QTRT2Q9H974 415 aaKnown RBP18.25■□□□□ 0.51
CLN3-242ENST00000635958 GLI3P10071 1580 aa18.24■□□□□ 0.51
CLN3-242ENST00000635958 ZNF428Q96B54 188 aa18.24■□□□□ 0.51
CLN3-242ENST00000635958 BTBD11A6QL63 1104 aa18.23■□□□□ 0.51
CLN3-242ENST00000635958 VAMP4O75379 141 aa18.23■□□□□ 0.51
CLN3-242ENST00000635958 C8orf58Q8NAV2 365 aa18.23■□□□□ 0.51
CLN3-242ENST00000635958 NFATC2IPQ8NCF5 419 aa18.23■□□□□ 0.51
CLN3-242ENST00000635958 RARSP54136 660 aaKnown RBP18.22■□□□□ 0.51
CLN3-242ENST00000635958 CABP4P57796 275 aa18.22■□□□□ 0.51
CLN3-242ENST00000635958 THSD7AQ9UPZ6 1657 aa18.22■□□□□ 0.51
CLN3-242ENST00000635958 TSPYL6Q8N831 410 aa18.21■□□□□ 0.51
CLN3-242ENST00000635958 SOS1Q07889 1333 aaPredicted RBP18.21■□□□□ 0.51
CLN3-242ENST00000635958 KDM3BQ7LBC6 1761 aa18.21■□□□□ 0.51
CLN3-242ENST00000635958 TWISTNBQ3B726 338 aaPredicted RBP18.21■□□□□ 0.51
CLN3-242ENST00000635958 MARCH10Q8NA82 808 aaPredicted RBP18.21■□□□□ 0.51
CLN3-242ENST00000635958 EIF4A1P60842 406 aaKnown RBP18.2■□□□□ 0.5
CLN3-242ENST00000635958 ALDH1L2Q3SY69 923 aa18.19■□□□□ 0.5
CLN3-242ENST00000635958 HEG1Q9ULI3 1381 aa18.18■□□□□ 0.5
CLN3-242ENST00000635958 KCNQ3O43525 872 aa18.18■□□□□ 0.5
CLN3-242ENST00000635958 KRT24Q2M2I5 525 aa18.18■□□□□ 0.5
CLN3-242ENST00000635958 ZNF790Q6PG37 636 aa18.18■□□□□ 0.5
CLN3-242ENST00000635958 ELL2O00472 640 aaPredicted RBP18.17■□□□□ 0.5
CLN3-242ENST00000635958 BRPF1P55201 1214 aaPredicted RBP18.17■□□□□ 0.5
CLN3-242ENST00000635958 TOGARAM1Q9Y4F4 1720 aa18.17■□□□□ 0.5
CLN3-242ENST00000635958 BCAR3O75815 825 aa18.16■□□□□ 0.5
CLN3-242ENST00000635958 HOXB7P09629 217 aa18.16■□□□□ 0.5
CLN3-242ENST00000635958 RRP1P56182 461 aaKnown RBP18.16■□□□□ 0.5
CLN3-242ENST00000635958 SSH1Q8WYL5 1049 aa18.16■□□□□ 0.5
CLN3-242ENST00000635958 RXRBP28702 533 aa18.15■□□□□ 0.5
CLN3-242ENST00000635958 RBM6P78332 1123 aaKnown RBP18.15■□□□□ 0.5
CLN3-242ENST00000635958 SEPT12Q8IYM1 358 aa18.15■□□□□ 0.5
CLN3-242ENST00000635958 TMOD3Q9NYL9 352 aa18.15■□□□□ 0.5
CLN3-242ENST00000635958 SLC39A6Q13433 755 aa18.14■□□□□ 0.5
CLN3-242ENST00000635958 BCL9O00512 1426 aa18.14■□□□□ 0.49
CLN3-242ENST00000635958 PIGBQ92521 554 aa18.14■□□□□ 0.49
CLN3-242ENST00000635958 ITGB4P16144 1822 aa18.13■□□□□ 0.49
CLN3-242ENST00000635958 GIGYF1O75420 1035 aaPredicted RBP18.13■□□□□ 0.49
CLN3-242ENST00000635958 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.13■□□□□ 0.49
CLN3-242ENST00000635958 CHMP4AQ9BY43 222 aa18.13■□□□□ 0.49
CLN3-242ENST00000635958 A0A0G2JS52 829 aa18.12■□□□□ 0.49
CLN3-242ENST00000635958 PRIM1P49642 420 aaKnown RBP18.12■□□□□ 0.49
CLN3-242ENST00000635958 TTC5Q8N0Z6 440 aa18.12■□□□□ 0.49
CLN3-242ENST00000635958 ZNF496Q96IT1 587 aaPredicted RBP18.12■□□□□ 0.49
CLN3-242ENST00000635958 SMC4Q9NTJ3 1288 aa18.12■□□□□ 0.49
CLN3-242ENST00000635958 PAPPAQ13219 1627 aa18.11■□□□□ 0.49
CLN3-242ENST00000635958 MRPL50Q8N5N7 158 aaKnown RBP18.11■□□□□ 0.49
CLN3-242ENST00000635958 FMNL2Q96PY5 1086 aa18.11■□□□□ 0.49
CLN3-242ENST00000635958 BCL2L13Q9BXK5 485 aa18.1■□□□□ 0.49
CLN3-242ENST00000635958 CCDC30Q5VVM6 783 aa18.09■□□□□ 0.49
CLN3-242ENST00000635958 KAT6BQ8WYB5 2073 aa18.09■□□□□ 0.49
CLN3-242ENST00000635958 DOT1LQ8TEK3 1739 aa18.09■□□□□ 0.49
CLN3-242ENST00000635958 UBR2Q8IWV8 1755 aa18.09■□□□□ 0.49
CLN3-242ENST00000635958 PLIN1O60240 522 aa18.09■□□□□ 0.49
CLN3-242ENST00000635958 ATG3Q9NT62 314 aa18.09■□□□□ 0.49
CLN3-242ENST00000635958 RGS12O14924 1447 aa18.08■□□□□ 0.49
CLN3-242ENST00000635958 SNRPA1P09661 255 aaKnown RBP18.08■□□□□ 0.48
CLN3-242ENST00000635958 ASAP1Q9ULH1 1129 aa18.08■□□□□ 0.48
CLN3-242ENST00000635958 KCPQ6ZWJ8 1503 aa18.08■□□□□ 0.48
CLN3-242ENST00000635958 KIF16BQ96L93 1317 aa18.08■□□□□ 0.48
CLN3-242ENST00000635958 ARHGAP45Q92619 1136 aa18.07■□□□□ 0.48
CLN3-242ENST00000635958 PDE3AQ14432 1141 aa18.07■□□□□ 0.48
CLN3-242ENST00000635958 HDGFL1Q5TGJ6 251 aa18.07■□□□□ 0.48
CLN3-242ENST00000635958 SYTL4Q96C24 671 aaPredicted RBP18.07■□□□□ 0.48
CLN3-242ENST00000635958 CACNA1FO60840 1977 aa18.06■□□□□ 0.48
CLN3-242ENST00000635958 IPO8O15397 1037 aaKnown RBP18.06■□□□□ 0.48
CLN3-242ENST00000635958 VSIG10Q8N0Z9 540 aa18.06■□□□□ 0.48
CLN3-242ENST00000635958 ACSBG1Q96GR2 724 aa18.06■□□□□ 0.48
CLN3-242ENST00000635958 NOB1Q9ULX3 412 aaKnown RBP18.06■□□□□ 0.48
CLN3-242ENST00000635958 ZKSCAN2Q63HK3 967 aa18.05■□□□□ 0.48
CLN3-242ENST00000635958 FRAT1Q92837 279 aaPredicted RBP18.05■□□□□ 0.48
CLN3-242ENST00000635958 PRAMEF22A3QJZ6 481 aa18.05■□□□□ 0.48
CLN3-242ENST00000635958 TCERG1O14776 1098 aaKnown RBP18.05■□□□□ 0.48
CLN3-242ENST00000635958 KCNQ2O43526 872 aa18.05■□□□□ 0.48
CLN3-242ENST00000635958 SLC4A2P04920 1241 aa18.05■□□□□ 0.48
CLN3-242ENST00000635958 KRT27Q7Z3Y8 459 aa18.05■□□□□ 0.48
CLN3-242ENST00000635958 STK31Q9BXU1 1019 aa18.05■□□□□ 0.48
CLN3-242ENST00000635958 ATF7IPQ6VMQ6 1270 aa18.04■□□□□ 0.48
CLN3-242ENST00000635958 BRWD3Q6RI45 1802 aa18.03■□□□□ 0.48
CLN3-242ENST00000635958 PTCD1O75127 700 aaKnown RBP18.03■□□□□ 0.48
CLN3-242ENST00000635958 EIF2S2P20042 333 aaKnown RBP18.03■□□□□ 0.48
CLN3-242ENST00000635958 MS4A1P11836 297 aa18.02■□□□□ 0.48
CLN3-242ENST00000635958 IRX6P78412 446 aaPredicted RBP18.02■□□□□ 0.48
CLN3-242ENST00000635958 C20orf194Q5TEA3 1177 aa18.02■□□□□ 0.48
CLN3-242ENST00000635958 DBF4Q9UBU7 674 aaPredicted RBP18.02■□□□□ 0.48
CLN3-242ENST00000635958 USP16Q9Y5T5 823 aa18.02■□□□□ 0.48
CLN3-242ENST00000635958 TRIM27P14373 513 aa18.02■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms