RNA–Protein interactions for RNA: ENST00000618902.1

SHMT1-211, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 5 BASIC

Gene SHMT1, Length 378 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-211ENST00000618902 RNMTO43148 476 aaKnown RBP6.95□□□□□ -1.3
SHMT1-211ENST00000618902 DCTN1Q14203 1278 aa6.95□□□□□ -1.3
SHMT1-211ENST00000618902 AKAP4Q5JQC9 854 aa6.95□□□□□ -1.3
SHMT1-211ENST00000618902 C1orf141Q5JVX7 400 aa6.95□□□□□ -1.3
SHMT1-211ENST00000618902 PIGBQ92521 554 aa6.95□□□□□ -1.3
SHMT1-211ENST00000618902 ADAMTS7Q9UKP4 1686 aa6.95□□□□□ -1.3
SHMT1-211ENST00000618902 ITGB4P16144 1822 aa6.94□□□□□ -1.3
SHMT1-211ENST00000618902 KCNQ4P56696 695 aa6.94□□□□□ -1.3
SHMT1-211ENST00000618902 R3HDM1Q15032 1099 aaKnown RBP6.94□□□□□ -1.3
SHMT1-211ENST00000618902 NFE2L2Q16236 605 aa6.94□□□□□ -1.3
SHMT1-211ENST00000618902 GAS2L2Q8NHY3 880 aa6.94□□□□□ -1.3
SHMT1-211ENST00000618902 SYTL4Q96C24 671 aaPredicted RBP6.94□□□□□ -1.3
SHMT1-211ENST00000618902 SLC4A9Q96Q91 983 aa6.94□□□□□ -1.3
SHMT1-211ENST00000618902 THUMPD2Q9BTF0 503 aaKnown RBP6.94□□□□□ -1.3
SHMT1-211ENST00000618902 MTFR1LQ9H019 292 aa6.94□□□□□ -1.3
SHMT1-211ENST00000618902 LRRC4BQ9NT99 713 aa6.94□□□□□ -1.3
SHMT1-211ENST00000618902 TMOD3Q9NYL9 352 aa6.94□□□□□ -1.3
SHMT1-211ENST00000618902 ASAP1Q9ULH1 1129 aa6.94□□□□□ -1.3
SHMT1-211ENST00000618902 RRP7AQ9Y3A4 280 aaKnown RBP6.94□□□□□ -1.3
SHMT1-211ENST00000618902 CEMIPQ8WUJ3 1361 aa6.94□□□□□ -1.3
SHMT1-211ENST00000618902 MAP3K5Q99683 1374 aa6.94□□□□□ -1.3
SHMT1-211ENST00000618902 SCN11AQ9UI33 1791 aa6.93□□□□□ -1.3
SHMT1-211ENST00000618902 DCAF8L1A6NGE4 600 aa6.93□□□□□ -1.3
SHMT1-211ENST00000618902 GNAT3A8MTJ3 354 aa6.93□□□□□ -1.3
SHMT1-211ENST00000618902 APAF1O14727 1248 aa6.93□□□□□ -1.3
SHMT1-211ENST00000618902 HTATSF1O43719 755 aaKnown RBP6.93□□□□□ -1.3
SHMT1-211ENST00000618902 NEFMP07197 916 aa6.93□□□□□ -1.3
SHMT1-211ENST00000618902 TMPOP42166 694 aaKnown RBP6.93□□□□□ -1.3
SHMT1-211ENST00000618902 WDR43Q15061 677 aaKnown RBP eCLIP6.93□□□□□ -1.3
SHMT1-211ENST00000618902 MCM10Q7L590 875 aa6.93□□□□□ -1.3
SHMT1-211ENST00000618902 ATG3Q9NT62 314 aa6.93□□□□□ -1.3
SHMT1-211ENST00000618902 TRIM35Q9UPQ4 493 aa6.93□□□□□ -1.3
SHMT1-211ENST00000618902 DLG5Q8TDM6 1919 aa6.93□□□□□ -1.3
SHMT1-211ENST00000618902 ZNF831Q5JPB2 1677 aa6.93□□□□□ -1.3
SHMT1-211ENST00000618902 NUP188Q5SRE5 1749 aa6.93□□□□□ -1.3
SHMT1-211ENST00000618902 MRC1P22897 1456 aa6.92□□□□□ -1.3
SHMT1-211ENST00000618902 VIRMAQ69YN4 1812 aaKnown RBP6.92□□□□□ -1.3
SHMT1-211ENST00000618902 KCNQ3O43525 872 aa6.92□□□□□ -1.3
SHMT1-211ENST00000618902 CABP4P57796 275 aa6.92□□□□□ -1.3
SHMT1-211ENST00000618902 RC3H1Q5TC82 1133 aaKnown RBP6.92□□□□□ -1.3
SHMT1-211ENST00000618902 VSIG10Q8N0Z9 540 aa6.92□□□□□ -1.3
SHMT1-211ENST00000618902 NFATC2IPQ8NCF5 419 aa6.92□□□□□ -1.3
SHMT1-211ENST00000618902 AKT1S1Q96B36 256 aa6.92□□□□□ -1.3
SHMT1-211ENST00000618902 RUNDC1Q96C34 613 aa6.92□□□□□ -1.3
SHMT1-211ENST00000618902 SLC52A2Q9HAB3 445 aa6.92□□□□□ -1.3
SHMT1-211ENST00000618902 ANO8Q9HCE9 1232 aaPredicted RBP6.92□□□□□ -1.3
SHMT1-211ENST00000618902 CCNL1Q9UK58 526 aaPredicted RBP6.92□□□□□ -1.3
SHMT1-211ENST00000618902 QSER1Q2KHR3 1735 aa6.92□□□□□ -1.3
SHMT1-211ENST00000618902 LY75O60449 1722 aa6.91□□□□□ -1.3
SHMT1-211ENST00000618902 SIPA1L3O60292 1781 aaPredicted RBP6.91□□□□□ -1.3
SHMT1-211ENST00000618902 SSFA2P28290 1259 aa6.91□□□□□ -1.3
SHMT1-211ENST00000618902 RIPK4P57078 832 aa6.91□□□□□ -1.3
SHMT1-211ENST00000618902 SLC39A6Q13433 755 aa6.91□□□□□ -1.3
SHMT1-211ENST00000618902 FAM9BQ8IZU0 186 aa6.91□□□□□ -1.3
SHMT1-211ENST00000618902 TEX13AQ9BXU3 409 aaPredicted RBP6.91□□□□□ -1.3
SHMT1-211ENST00000618902 MIS18AQ9NYP9 233 aa6.91□□□□□ -1.3
SHMT1-211ENST00000618902 TFCP2L1Q9NZI6 479 aa6.91□□□□□ -1.3
SHMT1-211ENST00000618902 PALLDQ8WX93 1383 aa6.91□□□□□ -1.3
SHMT1-211ENST00000618902 LOC102724428A0A0B4J2F2 783 aa6.9□□□□□ -1.3
SHMT1-211ENST00000618902 POLD1P28340 1107 aa6.9□□□□□ -1.3
SHMT1-211ENST00000618902 SIK1P57059 783 aa6.9□□□□□ -1.3
SHMT1-211ENST00000618902 ITPK1Q13572 414 aa6.9□□□□□ -1.3
SHMT1-211ENST00000618902 NEUROD2Q15784 382 aa6.9□□□□□ -1.3
SHMT1-211ENST00000618902 ZNF827Q17R98 1081 aa6.9□□□□□ -1.3
SHMT1-211ENST00000618902 AMIGO3Q86WK7 504 aa6.9□□□□□ -1.3
SHMT1-211ENST00000618902 MAPK8IP3Q9UPT6 1336 aa6.9□□□□□ -1.3
SHMT1-211ENST00000618902 KCPQ6ZWJ8 1503 aa6.9□□□□□ -1.31
SHMT1-211ENST00000618902 PAPPAQ13219 1627 aa6.9□□□□□ -1.31
SHMT1-211ENST00000618902 PSDA5PKW4 1024 aaPredicted RBP6.89□□□□□ -1.31
SHMT1-211ENST00000618902 RGL2O15211 777 aa6.89□□□□□ -1.31
SHMT1-211ENST00000618902 SMIM5Q71RC9 77 aa6.89□□□□□ -1.31
SHMT1-211ENST00000618902 LINC00116Q8NCU8 138 aa6.89□□□□□ -1.31
SHMT1-211ENST00000618902 YTHDC1Q96MU7 727 aaKnown RBP6.89□□□□□ -1.31
SHMT1-211ENST00000618902 PPP1R1BQ9UD71 204 aaPredicted RBP6.89□□□□□ -1.31
SHMT1-211ENST00000618902 MYH14Q7Z406 1995 aaKnown RBP6.88□□□□□ -1.31
SHMT1-211ENST00000618902 CNTNAP4Q9C0A0 1308 aa6.88□□□□□ -1.31
SHMT1-211ENST00000618902 PRAMEF22A3QJZ6 481 aa6.88□□□□□ -1.31
SHMT1-211ENST00000618902 PTCD1O75127 700 aaKnown RBP6.88□□□□□ -1.31
SHMT1-211ENST00000618902 ERICH6BQ5W0A0 696 aa6.88□□□□□ -1.31
SHMT1-211ENST00000618902 ZNF496Q96IT1 587 aaPredicted RBP6.88□□□□□ -1.31
SHMT1-211ENST00000618902 AK7Q96M32 723 aa6.88□□□□□ -1.31
SHMT1-211ENST00000618902 PDGFDQ9GZP0 370 aaPredicted RBP6.88□□□□□ -1.31
SHMT1-211ENST00000618902 FOXD4L1Q9NU39 408 aa6.88□□□□□ -1.31
SHMT1-211ENST00000618902 BABAM1Q9NWV8 329 aa6.88□□□□□ -1.31
SHMT1-211ENST00000618902 ZNF853P0CG23 659 aa6.87□□□□□ -1.31
SHMT1-211ENST00000618902 ATP6V1AP38606 617 aa6.87□□□□□ -1.31
SHMT1-211ENST00000618902 TEFQ10587 303 aa6.87□□□□□ -1.31
SHMT1-211ENST00000618902 TAF7Q15545 349 aaPredicted RBP6.87□□□□□ -1.31
SHMT1-211ENST00000618902 KRT24Q2M2I5 525 aa6.87□□□□□ -1.31
SHMT1-211ENST00000618902 ZNF790Q6PG37 636 aa6.87□□□□□ -1.31
SHMT1-211ENST00000618902 WWC1Q8IX03 1113 aa6.87□□□□□ -1.31
SHMT1-211ENST00000618902 DNAJC10Q8IXB1 793 aa6.87□□□□□ -1.31
SHMT1-211ENST00000618902 NLGN1Q8N2Q7 840 aa6.87□□□□□ -1.31
SHMT1-211ENST00000618902 RTF1Q92541 710 aaKnown RBP6.87□□□□□ -1.31
SHMT1-211ENST00000618902 ARXQ96QS3 562 aa6.87□□□□□ -1.31
SHMT1-211ENST00000618902 SGIP1Q9BQI5 828 aa6.87□□□□□ -1.31
SHMT1-211ENST00000618902 RBM42Q9BTD8 480 aaKnown RBP6.87□□□□□ -1.31
SHMT1-211ENST00000618902 CHMP4AQ9BY43 222 aa6.87□□□□□ -1.31
SHMT1-211ENST00000618902 SPINK5Q9NQ38 1064 aaPredicted RBP6.87□□□□□ -1.31
SHMT1-211ENST00000618902 SALL2Q9Y467 1007 aaPredicted RBP6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms