RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 QSER1Q2KHR3 1735 aa25.99■■□□□ 1.75
SHKBP1-221ENST00000599833 CICQ96RK0 1608 aaPredicted RBP25.99■■□□□ 1.75
SHKBP1-221ENST00000599833 UBR2Q8IWV8 1755 aa25.98■■□□□ 1.75
SHKBP1-221ENST00000599833 PSDA5PKW4 1024 aaPredicted RBP25.98■■□□□ 1.75
SHKBP1-221ENST00000599833 GNAT3A8MTJ3 354 aa25.98■■□□□ 1.75
SHKBP1-221ENST00000599833 SLC4A9Q96Q91 983 aa25.98■■□□□ 1.75
SHKBP1-221ENST00000599833 CABP4P57796 275 aa25.97■■□□□ 1.75
SHKBP1-221ENST00000599833 R3HDM1Q15032 1099 aaKnown RBP25.97■■□□□ 1.75
SHKBP1-221ENST00000599833 ZNF827Q17R98 1081 aa25.97■■□□□ 1.75
SHKBP1-221ENST00000599833 AKT1S1Q96B36 256 aa25.97■■□□□ 1.75
SHKBP1-221ENST00000599833 SMARCC1Q92922 1105 aaPredicted RBP25.96■■□□□ 1.75
SHKBP1-221ENST00000599833 ADAMTS8Q9UP79 889 aa25.96■■□□□ 1.75
SHKBP1-221ENST00000599833 COL5A3P25940 1745 aaPredicted RBP25.96■■□□□ 1.75
SHKBP1-221ENST00000599833 KCPQ6ZWJ8 1503 aa25.95■■□□□ 1.74
SHKBP1-221ENST00000599833 ANP32CO43423 234 aa25.95■■□□□ 1.74
SHKBP1-221ENST00000599833 CCNL1Q9UK58 526 aaPredicted RBP25.95■■□□□ 1.74
SHKBP1-221ENST00000599833 TJP1Q07157 1748 aa25.94■■□□□ 1.74
SHKBP1-221ENST00000599833 C4BP0C0L5 1744 aa25.94■■□□□ 1.74
SHKBP1-221ENST00000599833 LOC102724428A0A0B4J2F2 783 aa25.93■■□□□ 1.74
SHKBP1-221ENST00000599833 SIK1P57059 783 aa25.93■■□□□ 1.74
SHKBP1-221ENST00000599833 SLC15A2Q16348 729 aa25.93■■□□□ 1.74
SHKBP1-221ENST00000599833 ITPK1Q13572 414 aa25.92■■□□□ 1.74
SHKBP1-221ENST00000599833 NBPF14Q5TI25 921 aa25.92■■□□□ 1.74
SHKBP1-221ENST00000599833 NFE2L2Q16236 605 aa25.91■■□□□ 1.74
SHKBP1-221ENST00000599833 PDGFDQ9GZP0 370 aaPredicted RBP25.91■■□□□ 1.74
SHKBP1-221ENST00000599833 UBR3Q6ZT12 1888 aa25.9■■□□□ 1.74
SHKBP1-221ENST00000599833 HTATSF1O43719 755 aaKnown RBP25.89■■□□□ 1.74
SHKBP1-221ENST00000599833 DCTN1Q14203 1278 aa25.89■■□□□ 1.74
SHKBP1-221ENST00000599833 MCM10Q7L590 875 aa25.89■■□□□ 1.74
SHKBP1-221ENST00000599833 MYH14Q7Z406 1995 aaKnown RBP25.89■■□□□ 1.73
SHKBP1-221ENST00000599833 CCDC146Q8IYE0 955 aa25.88■■□□□ 1.73
SHKBP1-221ENST00000599833 LINC00116Q8NCU8 138 aa25.88■■□□□ 1.73
SHKBP1-221ENST00000599833 PNISRQ8TF01 805 aaKnown RBP25.88■■□□□ 1.73
SHKBP1-221ENST00000599833 SLC39A6Q13433 755 aa25.87■■□□□ 1.73
SHKBP1-221ENST00000599833 WDR43Q15061 677 aaKnown RBP eCLIP25.87■■□□□ 1.73
SHKBP1-221ENST00000599833 AMIGO3Q86WK7 504 aa25.87■■□□□ 1.73
SHKBP1-221ENST00000599833 PNNQ9H307 717 aaKnown RBP25.87■■□□□ 1.73
SHKBP1-221ENST00000599833 STK32BQ9NY57 414 aa25.87■■□□□ 1.73
SHKBP1-221ENST00000599833 LRP5O75197 1615 aa25.87■■□□□ 1.73
SHKBP1-221ENST00000599833 TMPOP42166 694 aaKnown RBP25.86■■□□□ 1.73
SHKBP1-221ENST00000599833 RUNDC1Q96C34 613 aa25.85■■□□□ 1.73
SHKBP1-221ENST00000599833 COL24A1Q17RW2 1714 aa25.85■■□□□ 1.73
SHKBP1-221ENST00000599833 PNPLA7Q6ZV29 1317 aa25.85■■□□□ 1.73
SHKBP1-221ENST00000599833 MAPK8IP3Q9UPT6 1336 aa25.85■■□□□ 1.73
SHKBP1-221ENST00000599833 KDM3BQ7LBC6 1761 aa25.84■■□□□ 1.73
SHKBP1-221ENST00000599833 ATP6V1AP38606 617 aa25.83■■□□□ 1.73
SHKBP1-221ENST00000599833 PTCD1O75127 700 aaKnown RBP25.82■■□□□ 1.72
SHKBP1-221ENST00000599833 TEFQ10587 303 aa25.82■■□□□ 1.72
SHKBP1-221ENST00000599833 RBM42Q9BTD8 480 aaKnown RBP25.81■■□□□ 1.72
SHKBP1-221ENST00000599833 THUMPD2Q9BTF0 503 aaKnown RBP25.81■■□□□ 1.72
SHKBP1-221ENST00000599833 MRS2Q9HD23 443 aa25.81■■□□□ 1.72
SHKBP1-221ENST00000599833 KCNQ3O43525 872 aa25.8■■□□□ 1.72
SHKBP1-221ENST00000599833 RTF1Q92541 710 aaKnown RBP25.8■■□□□ 1.72
SHKBP1-221ENST00000599833 TRIM35Q9UPQ4 493 aa25.8■■□□□ 1.72
SHKBP1-221ENST00000599833 NEFMP07197 916 aa25.79■■□□□ 1.72
SHKBP1-221ENST00000599833 ZNF790Q6PG37 636 aa25.79■■□□□ 1.72
SHKBP1-221ENST00000599833 RRP7AQ9Y3A4 280 aaKnown RBP25.79■■□□□ 1.72
SHKBP1-221ENST00000599833 RIPK4P57078 832 aa25.78■■□□□ 1.72
SHKBP1-221ENST00000599833 SMIM5Q71RC9 77 aa25.77■■□□□ 1.72
SHKBP1-221ENST00000599833 ZNF496Q96IT1 587 aaPredicted RBP25.77■■□□□ 1.72
SHKBP1-221ENST00000599833 CNTNAP4Q9C0A0 1308 aa25.77■■□□□ 1.72
SHKBP1-221ENST00000599833 BTBD11A6QL63 1104 aa25.76■■□□□ 1.71
SHKBP1-221ENST00000599833 COL23A1Q86Y22 540 aaPredicted RBP25.75■■□□□ 1.71
SHKBP1-221ENST00000599833 DNAJC10Q8IXB1 793 aa25.75■■□□□ 1.71
SHKBP1-221ENST00000599833 VSIG10Q8N0Z9 540 aa25.75■■□□□ 1.71
SHKBP1-221ENST00000599833 TFCP2L1Q9NZI6 479 aa25.75■■□□□ 1.71
SHKBP1-221ENST00000599833 HEG1Q9ULI3 1381 aa25.74■■□□□ 1.71
SHKBP1-221ENST00000599833 C4AP0C0L4 1744 aa25.74■■□□□ 1.71
SHKBP1-221ENST00000599833 APAF1O14727 1248 aa25.73■■□□□ 1.71
SHKBP1-221ENST00000599833 TAF7Q15545 349 aaPredicted RBP25.73■■□□□ 1.71
SHKBP1-221ENST00000599833 RC3H1Q5TC82 1133 aaKnown RBP25.73■■□□□ 1.71
SHKBP1-221ENST00000599833 INTS5Q6P9B9 1019 aaKnown RBP25.72■■□□□ 1.71
SHKBP1-221ENST00000599833 SGIP1Q9BQI5 828 aa25.72■■□□□ 1.71
SHKBP1-221ENST00000599833 MIS18AQ9NYP9 233 aa25.72■■□□□ 1.71
SHKBP1-221ENST00000599833 CYP19A1P11511 503 aaPredicted RBP25.71■■□□□ 1.71
SHKBP1-221ENST00000599833 AK7Q96M32 723 aa25.71■■□□□ 1.71
SHKBP1-221ENST00000599833 ZBTB7AO95365 584 aa25.7■■□□□ 1.7
SHKBP1-221ENST00000599833 HMGB2P26583 209 aaKnown RBP25.7■■□□□ 1.7
SHKBP1-221ENST00000599833 PTGER2P43116 358 aa25.7■■□□□ 1.7
SHKBP1-221ENST00000599833 CRKLP46109 303 aaKnown RBP25.7■■□□□ 1.7
SHKBP1-221ENST00000599833 NEUROD2Q15784 382 aa25.7■■□□□ 1.7
SHKBP1-221ENST00000599833 SSFA2P28290 1259 aa25.69■■□□□ 1.7
SHKBP1-221ENST00000599833 TTC5Q8N0Z6 440 aa25.69■■□□□ 1.7
SHKBP1-221ENST00000599833 PRAMEF22A3QJZ6 481 aa25.68■■□□□ 1.7
SHKBP1-221ENST00000599833 GNPATO15228 680 aa25.68■■□□□ 1.7
SHKBP1-221ENST00000599833 LMOD3Q0VAK6 560 aa25.68■■□□□ 1.7
SHKBP1-221ENST00000599833 FMNL2Q96PY5 1086 aa25.68■■□□□ 1.7
SHKBP1-221ENST00000599833 LAMB4A4D0S4 1761 aa25.68■■□□□ 1.7
SHKBP1-221ENST00000599833 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.67■■□□□ 1.7
SHKBP1-221ENST00000599833 RPS6KA4O75676 772 aa25.67■■□□□ 1.7
SHKBP1-221ENST00000599833 MTFR1LQ9H019 292 aa25.67■■□□□ 1.7
SHKBP1-221ENST00000599833 SLC16A10Q8TF71 515 aa25.66■■□□□ 1.7
SHKBP1-221ENST00000599833 EIF4A1P60842 406 aaKnown RBP25.64■■□□□ 1.7
SHKBP1-221ENST00000599833 DIEXFQ68CQ4 756 aaKnown RBP25.64■■□□□ 1.7
SHKBP1-221ENST00000599833 FLAD1Q8NFF5 587 aa25.64■■□□□ 1.7
SHKBP1-221ENST00000599833 SPON1Q9HCB6 807 aa25.64■■□□□ 1.7
SHKBP1-221ENST00000599833 CCDC87Q9NVE4 849 aa25.64■■□□□ 1.7
SHKBP1-221ENST00000599833 ZBTB1Q9Y2K1 713 aa25.64■■□□□ 1.7
SHKBP1-221ENST00000599833 CCER2I3L3R5 266 aa25.63■■□□□ 1.69
SHKBP1-221ENST00000599833 CHL1O00533 1208 aa25.63■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms