RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 ALDH1L2Q3SY69 923 aa19.61■□□□□ 0.73
TRIM28-209ENST00000597423 TNS2Q63HR2 1409 aa19.6■□□□□ 0.73
TRIM28-209ENST00000597423 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.6■□□□□ 0.73
TRIM28-209ENST00000597423 RARSP54136 660 aaKnown RBP19.6■□□□□ 0.73
TRIM28-209ENST00000597423 TTC5Q8N0Z6 440 aa19.6■□□□□ 0.73
TRIM28-209ENST00000597423 C8orf58Q8NAV2 365 aa19.6■□□□□ 0.73
TRIM28-209ENST00000597423 KDM6AO15550 1401 aaPredicted RBP19.59■□□□□ 0.73
TRIM28-209ENST00000597423 TMOD3Q9NYL9 352 aa19.59■□□□□ 0.73
TRIM28-209ENST00000597423 ELL2O00472 640 aaPredicted RBP19.58■□□□□ 0.72
TRIM28-209ENST00000597423 HOXB7P09629 217 aa19.58■□□□□ 0.72
TRIM28-209ENST00000597423 RNF123Q5XPI4 1314 aa19.57■□□□□ 0.72
TRIM28-209ENST00000597423 EIF4A1P60842 406 aaKnown RBP19.57■□□□□ 0.72
TRIM28-209ENST00000597423 ZNF790Q6PG37 636 aa19.57■□□□□ 0.72
TRIM28-209ENST00000597423 IPO8O15397 1037 aaKnown RBP19.56■□□□□ 0.72
TRIM28-209ENST00000597423 CANXP27824 592 aaKnown RBP19.56■□□□□ 0.72
TRIM28-209ENST00000597423 RRP1P56182 461 aaKnown RBP19.56■□□□□ 0.72
TRIM28-209ENST00000597423 RBM6P78332 1123 aaKnown RBP19.56■□□□□ 0.72
TRIM28-209ENST00000597423 TSPYL6Q8N831 410 aa19.56■□□□□ 0.72
TRIM28-209ENST00000597423 MARCH10Q8NA82 808 aaPredicted RBP19.56■□□□□ 0.72
TRIM28-209ENST00000597423 SMC4Q9NTJ3 1288 aa19.56■□□□□ 0.72
TRIM28-209ENST00000597423 LRRC37A3O60309 1634 aa19.55■□□□□ 0.72
TRIM28-209ENST00000597423 MS4A1P11836 297 aa19.55■□□□□ 0.72
TRIM28-209ENST00000597423 BCAR3O75815 825 aa19.54■□□□□ 0.72
TRIM28-209ENST00000597423 CCDC30Q5VVM6 783 aa19.54■□□□□ 0.72
TRIM28-209ENST00000597423 SEPT12Q8IYM1 358 aa19.54■□□□□ 0.72
TRIM28-209ENST00000597423 FMNL2Q96PY5 1086 aa19.54■□□□□ 0.72
TRIM28-209ENST00000597423 ADAMTS7Q9UKP4 1686 aa19.54■□□□□ 0.72
TRIM28-209ENST00000597423 BRPF1P55201 1214 aaPredicted RBP19.53■□□□□ 0.72
TRIM28-209ENST00000597423 SSH1Q8WYL5 1049 aa19.53■□□□□ 0.72
TRIM28-209ENST00000597423 STK31Q9BXU1 1019 aa19.53■□□□□ 0.72
TRIM28-209ENST00000597423 SYTL4Q96C24 671 aaPredicted RBP19.52■□□□□ 0.72
TRIM28-209ENST00000597423 MRC1P22897 1456 aa19.52■□□□□ 0.72
TRIM28-209ENST00000597423 KIF16BQ96L93 1317 aa19.51■□□□□ 0.71
TRIM28-209ENST00000597423 KCNQ3O43525 872 aa19.51■□□□□ 0.71
TRIM28-209ENST00000597423 RXRBP28702 533 aa19.51■□□□□ 0.71
TRIM28-209ENST00000597423 PRIM1P49642 420 aaKnown RBP19.51■□□□□ 0.71
TRIM28-209ENST00000597423 SLC39A6Q13433 755 aa19.51■□□□□ 0.71
TRIM28-209ENST00000597423 KRT24Q2M2I5 525 aa19.51■□□□□ 0.71
TRIM28-209ENST00000597423 ERICH6BQ5W0A0 696 aa19.51■□□□□ 0.71
TRIM28-209ENST00000597423 SCN11AQ9UI33 1791 aa19.51■□□□□ 0.71
TRIM28-209ENST00000597423 GIGYF1O75420 1035 aaPredicted RBP19.5■□□□□ 0.71
TRIM28-209ENST00000597423 SNRPA1P09661 255 aaKnown RBP19.5■□□□□ 0.71
TRIM28-209ENST00000597423 PIGBQ92521 554 aa19.5■□□□□ 0.71
TRIM28-209ENST00000597423 FRAT1Q92837 279 aaPredicted RBP19.5■□□□□ 0.71
TRIM28-209ENST00000597423 WNK3Q9BYP7 1800 aa19.49■□□□□ 0.71
TRIM28-209ENST00000597423 FKBP8Q14318 412 aa19.49■□□□□ 0.71
TRIM28-209ENST00000597423 PDE3AQ14432 1141 aa19.49■□□□□ 0.71
TRIM28-209ENST00000597423 HDGFL1Q5TGJ6 251 aa19.49■□□□□ 0.71
TRIM28-209ENST00000597423 ZKSCAN2Q63HK3 967 aa19.49■□□□□ 0.71
TRIM28-209ENST00000597423 MRPL50Q8N5N7 158 aaKnown RBP19.49■□□□□ 0.71
TRIM28-209ENST00000597423 BCL2L13Q9BXK5 485 aa19.49■□□□□ 0.71
TRIM28-209ENST00000597423 TEX13AQ9BXU3 409 aaPredicted RBP19.49■□□□□ 0.71
TRIM28-209ENST00000597423 GTF3C3Q9Y5Q9 886 aa19.49■□□□□ 0.71
TRIM28-209ENST00000597423 ARHGAP45Q92619 1136 aa19.48■□□□□ 0.71
TRIM28-209ENST00000597423 HEG1Q9ULI3 1381 aa19.47■□□□□ 0.71
TRIM28-209ENST00000597423 PLIN1O60240 522 aa19.47■□□□□ 0.71
TRIM28-209ENST00000597423 SLC4A2P04920 1241 aa19.47■□□□□ 0.71
TRIM28-209ENST00000597423 SMARCC1Q92922 1105 aaPredicted RBP19.47■□□□□ 0.71
TRIM28-209ENST00000597423 ZNF496Q96IT1 587 aaPredicted RBP19.47■□□□□ 0.71
TRIM28-209ENST00000597423 NOB1Q9ULX3 412 aaKnown RBP19.47■□□□□ 0.71
TRIM28-209ENST00000597423 GLI3P10071 1580 aa19.47■□□□□ 0.71
TRIM28-209ENST00000597423 SHANK3Q9BYB0 1731 aa19.46■□□□□ 0.71
TRIM28-209ENST00000597423 EIF2S2P20042 333 aaKnown RBP19.46■□□□□ 0.71
TRIM28-209ENST00000597423 KRT27Q7Z3Y8 459 aa19.46■□□□□ 0.71
TRIM28-209ENST00000597423 VSIG10Q8N0Z9 540 aa19.46■□□□□ 0.71
TRIM28-209ENST00000597423 ATG3Q9NT62 314 aa19.46■□□□□ 0.71
TRIM28-209ENST00000597423 BCL9O00512 1426 aa19.45■□□□□ 0.7
TRIM28-209ENST00000597423 ACSBG1Q96GR2 724 aa19.45■□□□□ 0.7
TRIM28-209ENST00000597423 API5Q9BZZ5 524 aaKnown RBP19.45■□□□□ 0.7
TRIM28-209ENST00000597423 DBF4Q9UBU7 674 aaPredicted RBP19.45■□□□□ 0.7
TRIM28-209ENST00000597423 ATF7IPQ6VMQ6 1270 aa19.44■□□□□ 0.7
TRIM28-209ENST00000597423 FAM196AQ6ZSG2 479 aa19.44■□□□□ 0.7
TRIM28-209ENST00000597423 ASAP1Q9ULH1 1129 aa19.44■□□□□ 0.7
TRIM28-209ENST00000597423 PTPRCP08575 1304 aa19.44■□□□□ 0.7
TRIM28-209ENST00000597423 THSD7AQ9UPZ6 1657 aa19.43■□□□□ 0.7
TRIM28-209ENST00000597423 TCERG1O14776 1098 aaKnown RBP19.43■□□□□ 0.7
TRIM28-209ENST00000597423 PTCD1O75127 700 aaKnown RBP19.43■□□□□ 0.7
TRIM28-209ENST00000597423 FTSJ3Q8IY81 847 aaKnown RBP19.43■□□□□ 0.7
TRIM28-209ENST00000597423 SIPA1L3O60292 1781 aaPredicted RBP19.42■□□□□ 0.7
TRIM28-209ENST00000597423 KDM3BQ7LBC6 1761 aa19.42■□□□□ 0.7
TRIM28-209ENST00000597423 DZIP1LQ8IYY4 767 aaKnown RBP19.42■□□□□ 0.7
TRIM28-209ENST00000597423 RBM42Q9BTD8 480 aaKnown RBP19.42■□□□□ 0.7
TRIM28-209ENST00000597423 HYPKQ9NX55 129 aa19.42■□□□□ 0.7
TRIM28-209ENST00000597423 STARD3NLO95772 234 aa19.41■□□□□ 0.7
TRIM28-209ENST00000597423 IRX6P78412 446 aaPredicted RBP19.41■□□□□ 0.7
TRIM28-209ENST00000597423 NECTIN2Q92692 538 aa19.41■□□□□ 0.7
TRIM28-209ENST00000597423 CHMP4BQ9H444 224 aaKnown RBP19.4■□□□□ 0.7
TRIM28-209ENST00000597423 ERBB4Q15303 1308 aa19.4■□□□□ 0.7
TRIM28-209ENST00000597423 DDX21Q9NR30 783 aaKnown RBP eCLIP19.39■□□□□ 0.69
TRIM28-209ENST00000597423 VIRMAQ69YN4 1812 aaKnown RBP19.39■□□□□ 0.69
TRIM28-209ENST00000597423 KCNQ2O43526 872 aa19.38■□□□□ 0.69
TRIM28-209ENST00000597423 HMGB2P26583 209 aaKnown RBP19.38■□□□□ 0.69
TRIM28-209ENST00000597423 AAMPQ13685 434 aa19.38■□□□□ 0.69
TRIM28-209ENST00000597423 CHPF2Q9P2E5 772 aa19.38■□□□□ 0.69
TRIM28-209ENST00000597423 RGS17Q9UGC6 210 aaPredicted RBP19.38■□□□□ 0.69
TRIM28-209ENST00000597423 USP16Q9Y5T5 823 aa19.38■□□□□ 0.69
TRIM28-209ENST00000597423 TRIM27P14373 513 aa19.37■□□□□ 0.69
TRIM28-209ENST00000597423 BCL11BQ9C0K0 894 aaPredicted RBP19.37■□□□□ 0.69
TRIM28-209ENST00000597423 PRAMEF22A3QJZ6 481 aa19.36■□□□□ 0.69
TRIM28-209ENST00000597423 DDX58O95786 925 aaKnown RBP19.36■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 74.5 ms