RNA–Protein interactions for RNA: ENST00000577001.1

PRPF8-216, Transcript of pre-mRNA processing factor 8, human

TSL 5

Gene PRPF8, Length 3,274 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRPF8-216	ENST00000577001	RPAP2	Q8IXW5	612 aa	Predicted RBP	18.09	■□□□□ 0.49
PRPF8-216	ENST00000577001	LRRCC1	Q9C099	1032 aa		18.09	■□□□□ 0.49
PRPF8-216	ENST00000577001	LMBRD1	Q9NUN5	540 aa		18.09	■□□□□ 0.49
PRPF8-216	ENST00000577001	R3HCC1	Q9Y3T6	440 aa	Known RBP	18.09	■□□□□ 0.49
PRPF8-216	ENST00000577001	NDUFB9	Q9Y6M9	179 aa		18.09	■□□□□ 0.49
PRPF8-216	ENST00000577001	ADGRB2	O60241	1585 aa		18.09	■□□□□ 0.49
PRPF8-216	ENST00000577001	FAM177B	A6PVY3	158 aa		18.08	■□□□□ 0.49
PRPF8-216	ENST00000577001	MX1	P20591	662 aa		18.08	■□□□□ 0.49
PRPF8-216	ENST00000577001	IL17RE	Q8NFR9	667 aa		18.08	■□□□□ 0.49
PRPF8-216	ENST00000577001	HMMR	O75330	724 aa		18.08	■□□□□ 0.48
PRPF8-216	ENST00000577001	ZMYM3	Q14202	1370 aa		18.08	■□□□□ 0.48
PRPF8-216	ENST00000577001	SRGAP3	O43295	1099 aa		18.08	■□□□□ 0.48
PRPF8-216	ENST00000577001	TAF7	Q15545	349 aa	Predicted RBP	18.08	■□□□□ 0.48
PRPF8-216	ENST00000577001	PTMA	P06454	111 aa	Known RBP	18.07	■□□□□ 0.48
PRPF8-216	ENST00000577001	C17orf53	Q8N3J3	647 aa	Predicted RBP	18.07	■□□□□ 0.48
PRPF8-216	ENST00000577001	PPP1R42	Q7Z4L9	355 aa		18.07	■□□□□ 0.48
PRPF8-216	ENST00000577001	KLHDC4	Q8TBB5	520 aa		18.07	■□□□□ 0.48
PRPF8-216	ENST00000577001	UBTFL1	P0CB47	393 aa	Predicted RBP	18.06	■□□□□ 0.48
PRPF8-216	ENST00000577001	REC8	O95072	547 aa		18.06	■□□□□ 0.48
PRPF8-216	ENST00000577001	COL9A3	Q14050	684 aa	Predicted RBP	18.06	■□□□□ 0.48
PRPF8-216	ENST00000577001	KIF13A	Q9H1H9	1805 aa		18.06	■□□□□ 0.48
PRPF8-216	ENST00000577001	VSIG10	Q8N0Z9	540 aa		18.06	■□□□□ 0.48
PRPF8-216	ENST00000577001	MSN	P26038	577 aa	Known RBP	18.05	■□□□□ 0.48
PRPF8-216	ENST00000577001	EDC4	Q6P2E9	1401 aa	Known RBP	18.05	■□□□□ 0.48
PRPF8-216	ENST00000577001	PI4KAP2	A4QPH2	592 aa		18.05	■□□□□ 0.48
PRPF8-216	ENST00000577001	FIBP	O43427	364 aa		18.05	■□□□□ 0.48
PRPF8-216	ENST00000577001	FAM173B	Q6P4H8	233 aa		18.05	■□□□□ 0.48
PRPF8-216	ENST00000577001	PI4KAP1	Q8N8J0	262 aa		18.05	■□□□□ 0.48
PRPF8-216	ENST00000577001	TSC1	Q92574	1164 aa		18.05	■□□□□ 0.48
PRPF8-216	ENST00000577001	CHPF2	Q9P2E5	772 aa		18.05	■□□□□ 0.48
PRPF8-216	ENST00000577001	KIAA1211	Q6ZU35	1233 aa		18.04	■□□□□ 0.48
PRPF8-216	ENST00000577001	A2ML1	A8K2U0	1454 aa		18.04	■□□□□ 0.48
PRPF8-216	ENST00000577001	ZFYVE9	O95405	1425 aa		18.04	■□□□□ 0.48
PRPF8-216	ENST00000577001	MED14	O60244	1454 aa		18.04	■□□□□ 0.48
PRPF8-216	ENST00000577001	FERMT3	Q86UX7	667 aa		18.04	■□□□□ 0.48
PRPF8-216	ENST00000577001	PTCH1	Q13635	1447 aa		18.04	■□□□□ 0.48
PRPF8-216	ENST00000577001	CLCN1	P35523	988 aa		18.04	■□□□□ 0.48
PRPF8-216	ENST00000577001	FAM13B	Q9NYF5	915 aa		18.04	■□□□□ 0.48
PRPF8-216	ENST00000577001	CWF19L2	Q2TBE0	894 aa	Known RBP	18.03	■□□□□ 0.48
PRPF8-216	ENST00000577001	ESYT1	Q9BSJ8	1104 aa		18.03	■□□□□ 0.48
PRPF8-216	ENST00000577001	CIZ1	Q9ULV3	898 aa	Predicted RBP	18.03	■□□□□ 0.48
PRPF8-216	ENST00000577001	VIRMA	Q69YN4	1812 aa	Known RBP	18.03	■□□□□ 0.48
PRPF8-216	ENST00000577001	ATP10D	Q9P241	1426 aa		18.02	■□□□□ 0.48
PRPF8-216	ENST00000577001	CHGB	P05060	677 aa		18.02	■□□□□ 0.48
PRPF8-216	ENST00000577001	KCNA6	P17658	529 aa		18.02	■□□□□ 0.48
PRPF8-216	ENST00000577001	HSP90AA2P	Q14568	343 aa	Predicted RBP	18.02	■□□□□ 0.48
PRPF8-216	ENST00000577001	NECAB1	Q8N987	351 aa		18.02	■□□□□ 0.48
PRPF8-216	ENST00000577001	USP44	Q9H0E7	712 aa		18.02	■□□□□ 0.48
PRPF8-216	ENST00000577001	KLHL40	Q2TBA0	621 aa		18.02	■□□□□ 0.47
PRPF8-216	ENST00000577001	GNAT3	A8MTJ3	354 aa		18.01	■□□□□ 0.47
PRPF8-216	ENST00000577001	CHML	P26374	656 aa		18.01	■□□□□ 0.47
PRPF8-216	ENST00000577001	SKOR2	Q2VWA4	1001 aa	Predicted RBP	18.01	■□□□□ 0.47
PRPF8-216	ENST00000577001	KCNJ4	P48050	445 aa		18.01	■□□□□ 0.47
PRPF8-216	ENST00000577001	NUCB2	P80303	420 aa		18.01	■□□□□ 0.47
PRPF8-216	ENST00000577001	CCDC8	Q9H0W5	538 aa	Predicted RBP	18.01	■□□□□ 0.47
PRPF8-216	ENST00000577001	STK3	Q13188	491 aa		18.01	■□□□□ 0.47
PRPF8-216	ENST00000577001	RASEF	Q8IZ41	740 aa		18.01	■□□□□ 0.47
PRPF8-216	ENST00000577001	EDC3	Q96F86	508 aa	Known RBP	18.01	■□□□□ 0.47
PRPF8-216	ENST00000577001	ARHGAP31	Q2M1Z3	1444 aa		18.01	■□□□□ 0.47
PRPF8-216	ENST00000577001	SOS1	Q07889	1333 aa	Predicted RBP	18	■□□□□ 0.47
PRPF8-216	ENST00000577001	TMEM131L	A2VDJ0	1609 aa		18	■□□□□ 0.47
PRPF8-216	ENST00000577001	MYL6B	P14649	208 aa		18	■□□□□ 0.47
PRPF8-216	ENST00000577001	SLC39A6	Q13433	755 aa		18	■□□□□ 0.47
PRPF8-216	ENST00000577001	PROSER3	Q2NL68	480 aa		18	■□□□□ 0.47
PRPF8-216	ENST00000577001	ESCO1	Q5FWF5	840 aa		18	■□□□□ 0.47
PRPF8-216	ENST00000577001	DNTTIP2	Q5QJE6	756 aa	Known RBP	18	■□□□□ 0.47
PRPF8-216	ENST00000577001	CCDC30	Q5VVM6	783 aa		18	■□□□□ 0.47
PRPF8-216	ENST00000577001	CNPY2	Q9Y2B0	182 aa		18	■□□□□ 0.47
PRPF8-216	ENST00000577001	EID1	Q9Y6B2	187 aa		17.99	■□□□□ 0.47
PRPF8-216	ENST00000577001	VPS37C	A5D8V6	355 aa	Predicted RBP	17.99	■□□□□ 0.47
PRPF8-216	ENST00000577001	CPSF1	Q10570	1443 aa	Known RBP	17.99	■□□□□ 0.47
PRPF8-216	ENST00000577001	BRPF1	P55201	1214 aa	Predicted RBP	17.99	■□□□□ 0.47
PRPF8-216	ENST00000577001	DDX17	Q92841	729 aa	Known RBP	17.99	■□□□□ 0.47
PRPF8-216	ENST00000577001	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	17.99	■□□□□ 0.47
PRPF8-216	ENST00000577001	PIK3R4	Q99570	1358 aa		17.99	■□□□□ 0.47
PRPF8-216	ENST00000577001	RGS12	O14924	1447 aa		17.98	■□□□□ 0.47
PRPF8-216	ENST00000577001	CCT4	P50991	539 aa	Known RBP	17.98	■□□□□ 0.47
PRPF8-216	ENST00000577001	CCDC83	Q8IWF9	413 aa		17.98	■□□□□ 0.47
PRPF8-216	ENST00000577001	PREX1	Q8TCU6	1659 aa		17.98	■□□□□ 0.47
PRPF8-216	ENST00000577001	LARGE1	O95461	756 aa		17.97	■□□□□ 0.47
PRPF8-216	ENST00000577001	NBPF6	Q5VWK0	638 aa		17.97	■□□□□ 0.47
PRPF8-216	ENST00000577001	NBPF4	Q96M43	638 aa		17.97	■□□□□ 0.47
PRPF8-216	ENST00000577001	HDGF	P51858	240 aa	Known RBP	17.97	■□□□□ 0.47
PRPF8-216	ENST00000577001	ZC3H6	P61129	1189 aa	Known RBP	17.97	■□□□□ 0.47
PRPF8-216	ENST00000577001	FBXW7	Q969H0	707 aa		17.97	■□□□□ 0.47
PRPF8-216	ENST00000577001	RIMS1	Q86UR5	1692 aa	Known RBP	17.97	■□□□□ 0.47
PRPF8-216	ENST00000577001	C9orf78	Q9NZ63	289 aa	Predicted RBP	17.97	■□□□□ 0.47
PRPF8-216	ENST00000577001	TEF	Q10587	303 aa		17.96	■□□□□ 0.47
PRPF8-216	ENST00000577001	PRPF40B	Q6NWY9	871 aa	Known RBP	17.96	■□□□□ 0.47
PRPF8-216	ENST00000577001	NAP1L2	Q9ULW6	460 aa	Predicted RBP	17.96	■□□□□ 0.47
PRPF8-216	ENST00000577001	NCOA3	Q9Y6Q9	1424 aa		17.96	■□□□□ 0.47
PRPF8-216	ENST00000577001	TRH	P20396	242 aa	Predicted RBP	17.96	■□□□□ 0.47
PRPF8-216	ENST00000577001	HOXC9	P31274	260 aa		17.96	■□□□□ 0.47
PRPF8-216	ENST00000577001	USP48	Q86UV5	1035 aa		17.96	■□□□□ 0.47
PRPF8-216	ENST00000577001	KNDC1	Q76NI1	1749 aa		17.96	■□□□□ 0.46
PRPF8-216	ENST00000577001	ATP8B2	P98198	1209 aa		17.96	■□□□□ 0.46
PRPF8-216	ENST00000577001	CAST	P20810	708 aa	Known RBP	17.95	■□□□□ 0.46
PRPF8-216	ENST00000577001	MCC	P23508	829 aa		17.95	■□□□□ 0.46
PRPF8-216	ENST00000577001	SRCIN1	Q9C0H9	1055 aa		17.95	■□□□□ 0.46
PRPF8-216	ENST00000577001	PTPRC	P08575	1304 aa		17.95	■□□□□ 0.46

Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms