RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 CABP4P57796 275 aa17.6■□□□□ 0.41
CCDC40-209ENST00000573474 NFATC2IPQ8NCF5 419 aa17.6■□□□□ 0.41
CCDC40-209ENST00000573474 SSH1Q8WYL5 1049 aa17.6■□□□□ 0.41
CCDC40-209ENST00000573474 SOS1Q07889 1333 aaPredicted RBP17.6■□□□□ 0.41
CCDC40-209ENST00000573474 SCN11AQ9UI33 1791 aa17.6■□□□□ 0.41
CCDC40-209ENST00000573474 WNK3Q9BYP7 1800 aa17.59■□□□□ 0.41
CCDC40-209ENST00000573474 MRC1P22897 1456 aa17.59■□□□□ 0.41
CCDC40-209ENST00000573474 TNS2Q63HR2 1409 aa17.59■□□□□ 0.41
CCDC40-209ENST00000573474 PLIN1O60240 522 aa17.59■□□□□ 0.41
CCDC40-209ENST00000573474 IRX6P78412 446 aaPredicted RBP17.59■□□□□ 0.41
CCDC40-209ENST00000573474 DDB1Q16531 1140 aa17.59■□□□□ 0.41
CCDC40-209ENST00000573474 KRT24Q2M2I5 525 aa17.59■□□□□ 0.41
CCDC40-209ENST00000573474 ERICH6BQ5W0A0 696 aa17.59■□□□□ 0.41
CCDC40-209ENST00000573474 SMC4Q9NTJ3 1288 aa17.59■□□□□ 0.41
CCDC40-209ENST00000573474 SHANK3Q9BYB0 1731 aa17.58■□□□□ 0.41
CCDC40-209ENST00000573474 EIF4A1P60842 406 aaKnown RBP17.58■□□□□ 0.4
CCDC40-209ENST00000573474 TRPC5Q9UL62 973 aaPredicted RBP17.58■□□□□ 0.4
CCDC40-209ENST00000573474 VIRMAQ69YN4 1812 aaKnown RBP17.57■□□□□ 0.4
CCDC40-209ENST00000573474 BRPF1P55201 1214 aaPredicted RBP17.57■□□□□ 0.4
CCDC40-209ENST00000573474 FAM98CQ17RN3 349 aaKnown RBP17.57■□□□□ 0.4
CCDC40-209ENST00000573474 BCL2L13Q9BXK5 485 aa17.57■□□□□ 0.4
CCDC40-209ENST00000573474 SIPA1L3O60292 1781 aaPredicted RBP17.57■□□□□ 0.4
CCDC40-209ENST00000573474 KCNQ3O43525 872 aa17.56■□□□□ 0.4
CCDC40-209ENST00000573474 CANXP27824 592 aaKnown RBP17.56■□□□□ 0.4
CCDC40-209ENST00000573474 GJD4Q96KN9 370 aaPredicted RBP17.56■□□□□ 0.4
CCDC40-209ENST00000573474 CHMP4AQ9BY43 222 aa17.56■□□□□ 0.4
CCDC40-209ENST00000573474 KDM3BQ7LBC6 1761 aa17.56■□□□□ 0.4
CCDC40-209ENST00000573474 ATRNO75882 1429 aa17.55■□□□□ 0.4
CCDC40-209ENST00000573474 HOXB7P09629 217 aa17.55■□□□□ 0.4
CCDC40-209ENST00000573474 ZNF790Q6PG37 636 aa17.55■□□□□ 0.4
CCDC40-209ENST00000573474 MRPL50Q8N5N7 158 aaKnown RBP17.55■□□□□ 0.4
CCDC40-209ENST00000573474 FRAT1Q92837 279 aaPredicted RBP17.55■□□□□ 0.4
CCDC40-209ENST00000573474 KIF16BQ96L93 1317 aa17.54■□□□□ 0.4
CCDC40-209ENST00000573474 IPO8O15397 1037 aaKnown RBP17.54■□□□□ 0.4
CCDC40-209ENST00000573474 QTRT2Q9H974 415 aaKnown RBP17.54■□□□□ 0.4
CCDC40-209ENST00000573474 SLC39A6Q13433 755 aa17.53■□□□□ 0.4
CCDC40-209ENST00000573474 PDE3AQ14432 1141 aa17.53■□□□□ 0.4
CCDC40-209ENST00000573474 ZKSCAN2Q63HK3 967 aa17.53■□□□□ 0.4
CCDC40-209ENST00000573474 TTC5Q8N0Z6 440 aa17.53■□□□□ 0.4
CCDC40-209ENST00000573474 HEG1Q9ULI3 1381 aa17.53■□□□□ 0.4
CCDC40-209ENST00000573474 MS4A1P11836 297 aa17.52■□□□□ 0.4
CCDC40-209ENST00000573474 CCDC30Q5VVM6 783 aa17.52■□□□□ 0.4
CCDC40-209ENST00000573474 MARCH10Q8NA82 808 aaPredicted RBP17.52■□□□□ 0.4
CCDC40-209ENST00000573474 TMOD3Q9NYL9 352 aa17.52■□□□□ 0.4
CCDC40-209ENST00000573474 NOB1Q9ULX3 412 aaKnown RBP17.52■□□□□ 0.4
CCDC40-209ENST00000573474 ONECUT3O60422 494 aaPredicted RBP17.51■□□□□ 0.39
CCDC40-209ENST00000573474 C20orf194Q5TEA3 1177 aa17.51■□□□□ 0.39
CCDC40-209ENST00000573474 ARHGAP45Q92619 1136 aa17.51■□□□□ 0.39
CCDC40-209ENST00000573474 TCERG1O14776 1098 aaKnown RBP17.5■□□□□ 0.39
CCDC40-209ENST00000573474 GIGYF1O75420 1035 aaPredicted RBP17.5■□□□□ 0.39
CCDC40-209ENST00000573474 STK31Q9BXU1 1019 aa17.5■□□□□ 0.39
CCDC40-209ENST00000573474 GLI3P10071 1580 aa17.49■□□□□ 0.39
CCDC40-209ENST00000573474 A0A0G2JS52 829 aa17.49■□□□□ 0.39
CCDC40-209ENST00000573474 MYT1Q01538 1121 aa17.49■□□□□ 0.39
CCDC40-209ENST00000573474 HDGFL1Q5TGJ6 251 aa17.49■□□□□ 0.39
CCDC40-209ENST00000573474 ZNF772Q68DY9 489 aaPredicted RBP17.49■□□□□ 0.39
CCDC40-209ENST00000573474 ATF7IPQ6VMQ6 1270 aa17.49■□□□□ 0.39
CCDC40-209ENST00000573474 PIGBQ92521 554 aa17.49■□□□□ 0.39
CCDC40-209ENST00000573474 FMNL2Q96PY5 1086 aa17.49■□□□□ 0.39
CCDC40-209ENST00000573474 TOGARAM1Q9Y4F4 1720 aa17.48■□□□□ 0.39
CCDC40-209ENST00000573474 SLC4A2P04920 1241 aa17.48■□□□□ 0.39
CCDC40-209ENST00000573474 ZNF496Q96IT1 587 aaPredicted RBP17.48■□□□□ 0.39
CCDC40-209ENST00000573474 CRBNQ96SW2 442 aa17.48■□□□□ 0.39
CCDC40-209ENST00000573474 THSD7AQ9UPZ6 1657 aa17.48■□□□□ 0.39
CCDC40-209ENST00000573474 SNRPA1P09661 255 aaKnown RBP17.47■□□□□ 0.39
CCDC40-209ENST00000573474 DZIP1LQ8IYY4 767 aaKnown RBP17.47■□□□□ 0.39
CCDC40-209ENST00000573474 EXOC6Q8TAG9 804 aa17.47■□□□□ 0.39
CCDC40-209ENST00000573474 TRIM27P14373 513 aa17.46■□□□□ 0.39
CCDC40-209ENST00000573474 EIF2S2P20042 333 aaKnown RBP17.46■□□□□ 0.39
CCDC40-209ENST00000573474 PRIM1P49642 420 aaKnown RBP17.46■□□□□ 0.39
CCDC40-209ENST00000573474 FTSJ3Q8IY81 847 aaKnown RBP17.46■□□□□ 0.39
CCDC40-209ENST00000573474 PANK1Q8TE04 598 aa17.46■□□□□ 0.39
CCDC40-209ENST00000573474 NECTIN2Q92692 538 aa17.46■□□□□ 0.39
CCDC40-209ENST00000573474 API5Q9BZZ5 524 aaKnown RBP17.46■□□□□ 0.39
CCDC40-209ENST00000573474 PPP4R2Q9NY27 417 aa17.46■□□□□ 0.39
CCDC40-209ENST00000573474 BCL9O00512 1426 aa17.46■□□□□ 0.39
CCDC40-209ENST00000573474 SEPT12Q8IYM1 358 aa17.45■□□□□ 0.38
CCDC40-209ENST00000573474 SYTL4Q96C24 671 aaPredicted RBP17.45■□□□□ 0.38
CCDC40-209ENST00000573474 TNNQ9UQP3 1299 aa17.45■□□□□ 0.38
CCDC40-209ENST00000573474 PTPRCP08575 1304 aa17.45■□□□□ 0.38
CCDC40-209ENST00000573474 CLUAP1Q96AJ1 413 aa17.44■□□□□ 0.38
CCDC40-209ENST00000573474 ATG3Q9NT62 314 aa17.44■□□□□ 0.38
CCDC40-209ENST00000573474 PAPPAQ13219 1627 aa17.43■□□□□ 0.38
CCDC40-209ENST00000573474 PRAMEF22A3QJZ6 481 aa17.43■□□□□ 0.38
CCDC40-209ENST00000573474 RLBP1P12271 317 aa17.43■□□□□ 0.38
CCDC40-209ENST00000573474 ASAP1Q9ULH1 1129 aa17.43■□□□□ 0.38
CCDC40-209ENST00000573474 RBM6P78332 1123 aaKnown RBP17.42■□□□□ 0.38
CCDC40-209ENST00000573474 G2E3Q7L622 706 aa17.42■□□□□ 0.38
CCDC40-209ENST00000573474 ACSBG1Q96GR2 724 aa17.42■□□□□ 0.38
CCDC40-209ENST00000573474 DBF4Q9UBU7 674 aaPredicted RBP17.42■□□□□ 0.38
CCDC40-209ENST00000573474 COG6Q9Y2V7 657 aa17.42■□□□□ 0.38
CCDC40-209ENST00000573474 ITGB4P16144 1822 aa17.42■□□□□ 0.38
CCDC40-209ENST00000573474 KCPQ6ZWJ8 1503 aa17.42■□□□□ 0.38
CCDC40-209ENST00000573474 PTCD1O75127 700 aaKnown RBP17.41■□□□□ 0.38
CCDC40-209ENST00000573474 MVPQ14764 893 aaKnown RBP17.41■□□□□ 0.38
CCDC40-209ENST00000573474 VSIG10Q8N0Z9 540 aa17.41■□□□□ 0.38
CCDC40-209ENST00000573474 CHPF2Q9P2E5 772 aa17.41■□□□□ 0.38
CCDC40-209ENST00000573474 DOT1LQ8TEK3 1739 aa17.41■□□□□ 0.38
CCDC40-209ENST00000573474 FLIIQ13045 1269 aa17.4■□□□□ 0.38
CCDC40-209ENST00000573474 AAMPQ13685 434 aa17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms