RNA–Protein interactions for RNA: ENST00000568034.1

COMMD4-222, Transcript of COMM domain containing 4, humanhuman

TSL 5

Gene COMMD4, Length 1,085 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-222ENST00000568034 NFATC2IPQ8NCF5 419 aa23.7■■□□□ 1.38
COMMD4-222ENST00000568034 RGPD3A6NKT7 1758 aaPredicted RBP23.7■■□□□ 1.38
COMMD4-222ENST00000568034 RGPD4Q7Z3J3 1758 aa23.7■■□□□ 1.38
COMMD4-222ENST00000568034 APBA3O96018 575 aa23.68■■□□□ 1.38
COMMD4-222ENST00000568034 LMOD3Q0VAK6 560 aa23.68■■□□□ 1.38
COMMD4-222ENST00000568034 NCBP3Q53F19 620 aaKnown RBP23.67■■□□□ 1.38
COMMD4-222ENST00000568034 DEFB132Q7Z7B7 95 aa23.67■■□□□ 1.38
COMMD4-222ENST00000568034 ATG3Q9NT62 314 aa23.66■■□□□ 1.38
COMMD4-222ENST00000568034 ASAP1Q9ULH1 1129 aa23.66■■□□□ 1.38
COMMD4-222ENST00000568034 LY75O60449 1722 aa23.66■■□□□ 1.38
COMMD4-222ENST00000568034 PLSCR1O15162 318 aa23.65■■□□□ 1.38
COMMD4-222ENST00000568034 TEFQ10587 303 aa23.65■■□□□ 1.38
COMMD4-222ENST00000568034 SF3B2Q13435 895 aaKnown RBP23.65■■□□□ 1.38
COMMD4-222ENST00000568034 CCDC27Q2M243 656 aa23.65■■□□□ 1.38
COMMD4-222ENST00000568034 CAMKK2Q96RR4 588 aa23.64■■□□□ 1.37
COMMD4-222ENST00000568034 PALLDQ8WX93 1383 aa23.64■■□□□ 1.37
COMMD4-222ENST00000568034 BAG6P46379 1132 aa23.63■■□□□ 1.37
COMMD4-222ENST00000568034 EN1Q05925 392 aaPredicted RBP23.63■■□□□ 1.37
COMMD4-222ENST00000568034 RREB1Q92766 1687 aa23.63■■□□□ 1.37
COMMD4-222ENST00000568034 KCPQ6ZWJ8 1503 aa23.63■■□□□ 1.37
COMMD4-222ENST00000568034 UBR2Q8IWV8 1755 aa23.63■■□□□ 1.37
COMMD4-222ENST00000568034 SLC39A6Q13433 755 aa23.62■■□□□ 1.37
COMMD4-222ENST00000568034 PROM2Q8N271 834 aa23.62■■□□□ 1.37
COMMD4-222ENST00000568034 KDM3BQ7LBC6 1761 aa23.62■■□□□ 1.37
COMMD4-222ENST00000568034 EZH2Q15910 746 aaKnown RBP23.61■■□□□ 1.37
COMMD4-222ENST00000568034 WWC1Q8IX03 1113 aa23.61■■□□□ 1.37
COMMD4-222ENST00000568034 TAF7Q15545 349 aaPredicted RBP23.6■■□□□ 1.37
COMMD4-222ENST00000568034 SMARCC1Q92922 1105 aaPredicted RBP23.6■■□□□ 1.37
COMMD4-222ENST00000568034 SALL2Q9Y467 1007 aaPredicted RBP23.6■■□□□ 1.37
COMMD4-222ENST00000568034 ZNF521Q96K83 1311 aa23.59■■□□□ 1.37
COMMD4-222ENST00000568034 KCNQ3O43525 872 aa23.59■■□□□ 1.37
COMMD4-222ENST00000568034 BTBD11A6QL63 1104 aa23.58■■□□□ 1.37
COMMD4-222ENST00000568034 NGEFQ8N5V2 710 aa23.58■■□□□ 1.37
COMMD4-222ENST00000568034 SLC4A9Q96Q91 983 aa23.58■■□□□ 1.37
COMMD4-222ENST00000568034 NUP188Q5SRE5 1749 aa23.57■■□□□ 1.36
COMMD4-222ENST00000568034 TXNRD1Q16881 649 aa23.57■■□□□ 1.36
COMMD4-222ENST00000568034 ZNF790Q6PG37 636 aa23.57■■□□□ 1.36
COMMD4-222ENST00000568034 MIS18AQ9NYP9 233 aa23.57■■□□□ 1.36
COMMD4-222ENST00000568034 ZNF831Q5JPB2 1677 aa23.57■■□□□ 1.36
COMMD4-222ENST00000568034 CICQ96RK0 1608 aaPredicted RBP23.56■■□□□ 1.36
COMMD4-222ENST00000568034 ZNF853P0CG23 659 aa23.56■■□□□ 1.36
COMMD4-222ENST00000568034 LRRC4BQ9NT99 713 aa23.56■■□□□ 1.36
COMMD4-222ENST00000568034 LOC102724428A0A0B4J2F2 783 aa23.55■■□□□ 1.36
COMMD4-222ENST00000568034 SIK1P57059 783 aa23.55■■□□□ 1.36
COMMD4-222ENST00000568034 TJP1Q07157 1748 aa23.54■■□□□ 1.36
COMMD4-222ENST00000568034 CHL1O00533 1208 aa23.53■■□□□ 1.36
COMMD4-222ENST00000568034 PTCD1O75127 700 aaKnown RBP23.53■■□□□ 1.36
COMMD4-222ENST00000568034 KCNQ4P56696 695 aa23.53■■□□□ 1.36
COMMD4-222ENST00000568034 SLC27A3Q5K4L6 730 aa23.53■■□□□ 1.36
COMMD4-222ENST00000568034 ZNF496Q96IT1 587 aaPredicted RBP23.53■■□□□ 1.36
COMMD4-222ENST00000568034 CFAP44Q96MT7 982 aa23.53■■□□□ 1.36
COMMD4-222ENST00000568034 IFT57Q9NWB7 429 aa23.53■■□□□ 1.36
COMMD4-222ENST00000568034 BABAM1Q9NWV8 329 aa23.53■■□□□ 1.36
COMMD4-222ENST00000568034 CCNL1Q9UK58 526 aaPredicted RBP23.53■■□□□ 1.36
COMMD4-222ENST00000568034 TAF1LQ8IZX4 1826 aa23.52■■□□□ 1.36
COMMD4-222ENST00000568034 ITPK1Q13572 414 aa23.52■■□□□ 1.36
COMMD4-222ENST00000568034 TTC5Q8N0Z6 440 aa23.52■■□□□ 1.36
COMMD4-222ENST00000568034 TSPYL4Q9UJ04 414 aa23.52■■□□□ 1.36
COMMD4-222ENST00000568034 IL16Q14005 1332 aa23.52■■□□□ 1.36
COMMD4-222ENST00000568034 CALD1Q05682 793 aaKnown RBP23.51■■□□□ 1.35
COMMD4-222ENST00000568034 WDR63Q8IWG1 891 aa23.51■■□□□ 1.35
COMMD4-222ENST00000568034 RBM42Q9BTD8 480 aaKnown RBP23.51■■□□□ 1.35
COMMD4-222ENST00000568034 HEG1Q9ULI3 1381 aa23.51■■□□□ 1.35
COMMD4-222ENST00000568034 C5P01031 1676 aa23.51■■□□□ 1.35
COMMD4-222ENST00000568034 COL5A3P25940 1745 aaPredicted RBP23.5■■□□□ 1.35
COMMD4-222ENST00000568034 SPINK5Q9NQ38 1064 aaPredicted RBP23.5■■□□□ 1.35
COMMD4-222ENST00000568034 EIF4A1P60842 406 aaKnown RBP23.49■■□□□ 1.35
COMMD4-222ENST00000568034 MBIPQ9NS73 344 aa23.49■■□□□ 1.35
COMMD4-222ENST00000568034 LAS1LQ9Y4W2 734 aaKnown RBP23.49■■□□□ 1.35
COMMD4-222ENST00000568034 ATP6V1AP38606 617 aa23.48■■□□□ 1.35
COMMD4-222ENST00000568034 GNAI1P63096 354 aa23.48■■□□□ 1.35
COMMD4-222ENST00000568034 HNRNPUQ00839 825 aaKnown RBP eCLIP23.48■■□□□ 1.35
COMMD4-222ENST00000568034 FMNL2Q96PY5 1086 aa23.48■■□□□ 1.35
COMMD4-222ENST00000568034 VSIG10Q8N0Z9 540 aa23.47■■□□□ 1.35
COMMD4-222ENST00000568034 LINC00116Q8NCU8 138 aa23.47■■□□□ 1.35
COMMD4-222ENST00000568034 ANO8Q9HCE9 1232 aaPredicted RBP23.47■■□□□ 1.35
COMMD4-222ENST00000568034 C4BP0C0L5 1744 aa23.45■■□□□ 1.34
COMMD4-222ENST00000568034 PRAMEF22A3QJZ6 481 aa23.45■■□□□ 1.34
COMMD4-222ENST00000568034 DNAJC10Q8IXB1 793 aa23.45■■□□□ 1.34
COMMD4-222ENST00000568034 KRT24Q2M2I5 525 aa23.44■■□□□ 1.34
COMMD4-222ENST00000568034 TSR2Q969E8 191 aaKnown RBP23.44■■□□□ 1.34
COMMD4-222ENST00000568034 FANCIQ9NVI1 1328 aa23.43■■□□□ 1.34
COMMD4-222ENST00000568034 ZNF827Q17R98 1081 aa23.43■■□□□ 1.34
COMMD4-222ENST00000568034 AKT1S1Q96B36 256 aa23.43■■□□□ 1.34
COMMD4-222ENST00000568034 MYH14Q7Z406 1995 aaKnown RBP23.43■■□□□ 1.34
COMMD4-222ENST00000568034 LAMB4A4D0S4 1761 aa23.42■■□□□ 1.34
COMMD4-222ENST00000568034 GIGYF1O75420 1035 aaPredicted RBP23.42■■□□□ 1.34
COMMD4-222ENST00000568034 TUBGCP6Q96RT7 1819 aa23.41■■□□□ 1.34
COMMD4-222ENST00000568034 SNRPA1P09661 255 aaKnown RBP23.41■■□□□ 1.34
COMMD4-222ENST00000568034 CYP19A1P11511 503 aaPredicted RBP23.41■■□□□ 1.34
COMMD4-222ENST00000568034 GOLGA2Q08379 1002 aa23.41■■□□□ 1.34
COMMD4-222ENST00000568034 ZBED9Q6R2W3 1325 aa23.4■■□□□ 1.34
COMMD4-222ENST00000568034 CNTNAP4Q9C0A0 1308 aa23.4■■□□□ 1.34
COMMD4-222ENST00000568034 CDCA7LQ96GN5 454 aa23.4■■□□□ 1.34
COMMD4-222ENST00000568034 SLFN5Q08AF3 891 aa23.39■■□□□ 1.33
COMMD4-222ENST00000568034 USP16Q9Y5T5 823 aa23.39■■□□□ 1.33
COMMD4-222ENST00000568034 UBR3Q6ZT12 1888 aa23.38■■□□□ 1.33
COMMD4-222ENST00000568034 E9PSI1 815 aa23.37■■□□□ 1.33
COMMD4-222ENST00000568034 CRKLP46109 303 aaKnown RBP23.37■■□□□ 1.33
COMMD4-222ENST00000568034 RC3H1Q5TC82 1133 aaKnown RBP23.37■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms