RNA–Protein interactions for RNA: ENST00000563239.1

UBR1-204, Transcript of ubiquitin protein ligase E3 component n-recognin 1, humanhuman

TSL 3

Gene UBR1, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR1-204ENST00000563239 MAP3K5Q99683 1374 aa11.4□□□□□ -0.59
UBR1-204ENST00000563239 GNAT3A8MTJ3 354 aa11.39□□□□□ -0.59
UBR1-204ENST00000563239 CABP4P57796 275 aa11.39□□□□□ -0.59
UBR1-204ENST00000563239 SMARCC1Q92922 1105 aaPredicted RBP11.39□□□□□ -0.59
UBR1-204ENST00000563239 AKT1S1Q96B36 256 aa11.39□□□□□ -0.59
UBR1-204ENST00000563239 SLC4A9Q96Q91 983 aa11.39□□□□□ -0.59
UBR1-204ENST00000563239 SLC52A2Q9HAB3 445 aa11.39□□□□□ -0.59
UBR1-204ENST00000563239 CCNL1Q9UK58 526 aaPredicted RBP11.39□□□□□ -0.59
UBR1-204ENST00000563239 NPM3O75607 178 aaKnown RBP11.38□□□□□ -0.59
UBR1-204ENST00000563239 SLC15A2Q16348 729 aa11.38□□□□□ -0.59
UBR1-204ENST00000563239 PDGFDQ9GZP0 370 aaPredicted RBP11.38□□□□□ -0.59
UBR1-204ENST00000563239 CEMIPQ8WUJ3 1361 aa11.38□□□□□ -0.59
UBR1-204ENST00000563239 VIRMAQ69YN4 1812 aaKnown RBP11.37□□□□□ -0.59
UBR1-204ENST00000563239 LOC102724428A0A0B4J2F2 783 aa11.37□□□□□ -0.59
UBR1-204ENST00000563239 SIK1P57059 783 aa11.37□□□□□ -0.59
UBR1-204ENST00000563239 ITPK1Q13572 414 aa11.37□□□□□ -0.59
UBR1-204ENST00000563239 ADAMTS8Q9UP79 889 aa11.37□□□□□ -0.59
UBR1-204ENST00000563239 CASZ1Q86V15 1759 aa11.36□□□□□ -0.59
UBR1-204ENST00000563239 STK32BQ9NY57 414 aa11.36□□□□□ -0.59
UBR1-204ENST00000563239 SIPA1L3O60292 1781 aaPredicted RBP11.36□□□□□ -0.59
UBR1-204ENST00000563239 TAF1LQ8IZX4 1826 aa11.35□□□□□ -0.59
UBR1-204ENST00000563239 ANP32CO43423 234 aa11.35□□□□□ -0.59
UBR1-204ENST00000563239 SLC39A6Q13433 755 aa11.35□□□□□ -0.59
UBR1-204ENST00000563239 DCTN1Q14203 1278 aa11.35□□□□□ -0.59
UBR1-204ENST00000563239 NFE2L2Q16236 605 aa11.35□□□□□ -0.59
UBR1-204ENST00000563239 MCM10Q7L590 875 aa11.35□□□□□ -0.59
UBR1-204ENST00000563239 AMIGO3Q86WK7 504 aa11.35□□□□□ -0.59
UBR1-204ENST00000563239 LINC00116Q8NCU8 138 aa11.35□□□□□ -0.59
UBR1-204ENST00000563239 C5P01031 1676 aa11.35□□□□□ -0.59
UBR1-204ENST00000563239 ZNF831Q5JPB2 1677 aa11.35□□□□□ -0.59
UBR1-204ENST00000563239 KCPQ6ZWJ8 1503 aa11.35□□□□□ -0.59
UBR1-204ENST00000563239 HTATSF1O43719 755 aaKnown RBP11.34□□□□□ -0.59
UBR1-204ENST00000563239 ATP6V1AP38606 617 aa11.34□□□□□ -0.59
UBR1-204ENST00000563239 CCDC146Q8IYE0 955 aa11.34□□□□□ -0.59
UBR1-204ENST00000563239 TUBGCP6Q96RT7 1819 aa11.34□□□□□ -0.59
UBR1-204ENST00000563239 PNPLA7Q6ZV29 1317 aa11.34□□□□□ -0.59
UBR1-204ENST00000563239 DLG5Q8TDM6 1919 aa11.33□□□□□ -0.6
UBR1-204ENST00000563239 C4BP0C0L5 1744 aa11.33□□□□□ -0.6
UBR1-204ENST00000563239 PTCD1O75127 700 aaKnown RBP11.33□□□□□ -0.6
UBR1-204ENST00000563239 WDR43Q15061 677 aaKnown RBP eCLIP11.33□□□□□ -0.6
UBR1-204ENST00000563239 PNISRQ8TF01 805 aaKnown RBP11.33□□□□□ -0.6
UBR1-204ENST00000563239 RBM42Q9BTD8 480 aaKnown RBP11.33□□□□□ -0.6
UBR1-204ENST00000563239 PNNQ9H307 717 aaKnown RBP11.33□□□□□ -0.6
UBR1-204ENST00000563239 QSER1Q2KHR3 1735 aa11.32□□□□□ -0.6
UBR1-204ENST00000563239 CICQ96RK0 1608 aaPredicted RBP11.32□□□□□ -0.6
UBR1-204ENST00000563239 UBR2Q8IWV8 1755 aa11.32□□□□□ -0.6
UBR1-204ENST00000563239 KCNQ3O43525 872 aa11.32□□□□□ -0.6
UBR1-204ENST00000563239 TMPOP42166 694 aaKnown RBP11.32□□□□□ -0.6
UBR1-204ENST00000563239 TEFQ10587 303 aa11.32□□□□□ -0.6
UBR1-204ENST00000563239 SMIM5Q71RC9 77 aa11.32□□□□□ -0.6
UBR1-204ENST00000563239 CNKSR2Q8WXI2 1034 aa11.32□□□□□ -0.6
UBR1-204ENST00000563239 RUNDC1Q96C34 613 aa11.32□□□□□ -0.6
UBR1-204ENST00000563239 THUMPD2Q9BTF0 503 aaKnown RBP11.32□□□□□ -0.6
UBR1-204ENST00000563239 MAPK8IP3Q9UPT6 1336 aa11.32□□□□□ -0.6
UBR1-204ENST00000563239 TJP1Q07157 1748 aa11.32□□□□□ -0.6
UBR1-204ENST00000563239 ZNF790Q6PG37 636 aa11.31□□□□□ -0.6
UBR1-204ENST00000563239 COL23A1Q86Y22 540 aaPredicted RBP11.31□□□□□ -0.6
UBR1-204ENST00000563239 RTF1Q92541 710 aaKnown RBP11.31□□□□□ -0.6
UBR1-204ENST00000563239 TFCP2L1Q9NZI6 479 aa11.31□□□□□ -0.6
UBR1-204ENST00000563239 COL5A3P25940 1745 aaPredicted RBP11.31□□□□□ -0.6
UBR1-204ENST00000563239 LRP5O75197 1615 aa11.31□□□□□ -0.6
UBR1-204ENST00000563239 ZBTB7AO95365 584 aa11.3□□□□□ -0.6
UBR1-204ENST00000563239 NEFMP07197 916 aa11.3□□□□□ -0.6
UBR1-204ENST00000563239 RIPK4P57078 832 aa11.3□□□□□ -0.6
UBR1-204ENST00000563239 ZNF496Q96IT1 587 aaPredicted RBP11.3□□□□□ -0.6
UBR1-204ENST00000563239 TRIM35Q9UPQ4 493 aa11.3□□□□□ -0.6
UBR1-204ENST00000563239 RRP7AQ9Y3A4 280 aaKnown RBP11.3□□□□□ -0.6
UBR1-204ENST00000563239 BTBD11A6QL63 1104 aa11.29□□□□□ -0.6
UBR1-204ENST00000563239 PTGER2P43116 358 aa11.29□□□□□ -0.6
UBR1-204ENST00000563239 RC3H1Q5TC82 1133 aaKnown RBP11.29□□□□□ -0.6
UBR1-204ENST00000563239 DNAJC10Q8IXB1 793 aa11.29□□□□□ -0.6
UBR1-204ENST00000563239 MRS2Q9HD23 443 aa11.29□□□□□ -0.6
UBR1-204ENST00000563239 MIS18AQ9NYP9 233 aa11.29□□□□□ -0.6
UBR1-204ENST00000563239 UBR3Q6ZT12 1888 aa11.29□□□□□ -0.6
UBR1-204ENST00000563239 CNTNAP4Q9C0A0 1308 aa11.29□□□□□ -0.6
UBR1-204ENST00000563239 MYH14Q7Z406 1995 aaKnown RBP11.28□□□□□ -0.6
UBR1-204ENST00000563239 YY1P25490 414 aa11.28□□□□□ -0.6
UBR1-204ENST00000563239 HMGB2P26583 209 aaKnown RBP11.28□□□□□ -0.6
UBR1-204ENST00000563239 TAF7Q15545 349 aaPredicted RBP11.28□□□□□ -0.6
UBR1-204ENST00000563239 INTS5Q6P9B9 1019 aaKnown RBP11.28□□□□□ -0.6
UBR1-204ENST00000563239 VSIG10Q8N0Z9 540 aa11.28□□□□□ -0.6
UBR1-204ENST00000563239 AK7Q96M32 723 aa11.28□□□□□ -0.6
UBR1-204ENST00000563239 SGIP1Q9BQI5 828 aa11.28□□□□□ -0.6
UBR1-204ENST00000563239 ATF5Q9Y2D1 282 aaPredicted RBP11.28□□□□□ -0.6
UBR1-204ENST00000563239 HEG1Q9ULI3 1381 aa11.28□□□□□ -0.6
UBR1-204ENST00000563239 COL24A1Q17RW2 1714 aa11.27□□□□□ -0.61
UBR1-204ENST00000563239 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.27□□□□□ -0.61
UBR1-204ENST00000563239 APAF1O14727 1248 aa11.27□□□□□ -0.61
UBR1-204ENST00000563239 GNPATO15228 680 aa11.27□□□□□ -0.61
UBR1-204ENST00000563239 CYP19A1P11511 503 aaPredicted RBP11.27□□□□□ -0.61
UBR1-204ENST00000563239 CRKLP46109 303 aaKnown RBP11.27□□□□□ -0.61
UBR1-204ENST00000563239 NEUROD2Q15784 382 aa11.27□□□□□ -0.61
UBR1-204ENST00000563239 TTC5Q8N0Z6 440 aa11.27□□□□□ -0.61
UBR1-204ENST00000563239 MTFR1LQ9H019 292 aa11.27□□□□□ -0.61
UBR1-204ENST00000563239 SPON1Q9HCB6 807 aa11.27□□□□□ -0.61
UBR1-204ENST00000563239 SENP3-EIF4A1A0A087X0R7 540 aa11.26□□□□□ -0.61
UBR1-204ENST00000563239 RPS6KA4O75676 772 aa11.26□□□□□ -0.61
UBR1-204ENST00000563239 SSFA2P28290 1259 aa11.26□□□□□ -0.61
UBR1-204ENST00000563239 MAPK8IP2Q13387 824 aaPredicted RBP11.26□□□□□ -0.61
UBR1-204ENST00000563239 SLC16A10Q8TF71 515 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms