RNA–Protein interactions for RNA: ENST00000556778.5

PRKCH-222, Transcript of protein kinase C eta, human

TSL 4

Gene PRKCH, Length 545 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKCH-222	ENST00000556778	CIZ1	Q9ULV3	898 aa	Predicted RBP	11.83	□□□□□ -0.52
PRKCH-222	ENST00000556778	SPG7	Q9UQ90	795 aa		11.83	□□□□□ -0.52
PRKCH-222	ENST00000556778	PHKG2	P15735	406 aa		11.82	□□□□□ -0.52
PRKCH-222	ENST00000556778	MTHFSD	Q2M296	383 aa	Known RBP	11.82	□□□□□ -0.52
PRKCH-222	ENST00000556778	BCL11B	Q9C0K0	894 aa	Predicted RBP	11.82	□□□□□ -0.52
PRKCH-222	ENST00000556778	MYBBP1A	Q9BQG0	1328 aa	Known RBP	11.82	□□□□□ -0.52
PRKCH-222	ENST00000556778	RGPD2	P0DJD1	1756 aa		11.82	□□□□□ -0.52
PRKCH-222	ENST00000556778	KDR	P35968	1356 aa		11.81	□□□□□ -0.52
PRKCH-222	ENST00000556778	SF3B2	Q13435	895 aa	Known RBP	11.81	□□□□□ -0.52
PRKCH-222	ENST00000556778	PLEKHO1	Q53GL0	409 aa	Predicted RBP	11.81	□□□□□ -0.52
PRKCH-222	ENST00000556778	CAMKK2	Q96RR4	588 aa		11.81	□□□□□ -0.52
PRKCH-222	ENST00000556778	RSPH6A	Q9H0K4	717 aa		11.81	□□□□□ -0.52
PRKCH-222	ENST00000556778	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	11.81	□□□□□ -0.52
PRKCH-222	ENST00000556778	PCDHB13	Q9Y5F0	798 aa		11.81	□□□□□ -0.52
PRKCH-222	ENST00000556778	PCDH11X	Q9BZA7	1347 aa		11.81	□□□□□ -0.52
PRKCH-222	ENST00000556778	PCDH11Y	Q9BZA8	1340 aa		11.81	□□□□□ -0.52
PRKCH-222	ENST00000556778	MAP2	P11137	1827 aa	Known RBP	11.81	□□□□□ -0.52
PRKCH-222	ENST00000556778	PRKAR2B	P31323	418 aa		11.8	□□□□□ -0.52
PRKCH-222	ENST00000556778	KCNQ4	P56696	695 aa		11.8	□□□□□ -0.52
PRKCH-222	ENST00000556778	ZNF530	Q6P9A1	599 aa	Predicted RBP	11.8	□□□□□ -0.52
PRKCH-222	ENST00000556778	MPRIP	Q6WCQ1	1025 aa		11.8	□□□□□ -0.52
PRKCH-222	ENST00000556778	SGIP1	Q9BQI5	828 aa		11.8	□□□□□ -0.52
PRKCH-222	ENST00000556778	TRPC6	Q9Y210	931 aa		11.8	□□□□□ -0.52
PRKCH-222	ENST00000556778	PARP4	Q9UKK3	1724 aa	Known RBP	11.8	□□□□□ -0.52
PRKCH-222	ENST00000556778	NKX1-1	Q15270	411 aa	Predicted RBP	11.79	□□□□□ -0.52
PRKCH-222	ENST00000556778	IFNL2	Q8IZJ0	200 aa		11.79	□□□□□ -0.52
PRKCH-222	ENST00000556778	LGR6	Q9HBX8	967 aa		11.79	□□□□□ -0.52
PRKCH-222	ENST00000556778	NUDC	Q9Y266	331 aa		11.79	□□□□□ -0.52
PRKCH-222	ENST00000556778	BCL9	O00512	1426 aa		11.78	□□□□□ -0.52
PRKCH-222	ENST00000556778	BAG6	P46379	1132 aa		11.78	□□□□□ -0.52
PRKCH-222	ENST00000556778	AMOT	Q4VCS5	1084 aa		11.78	□□□□□ -0.52
PRKCH-222	ENST00000556778	IFNL1	Q8IU54	200 aa		11.78	□□□□□ -0.52
PRKCH-222	ENST00000556778	PIGB	Q92521	554 aa		11.78	□□□□□ -0.52
PRKCH-222	ENST00000556778	SENP3-EIF4A1	A0A087X0R7	540 aa		11.77	□□□□□ -0.53
PRKCH-222	ENST00000556778	ANP32C	O43423	234 aa		11.77	□□□□□ -0.53
PRKCH-222	ENST00000556778	DCBLD2	Q96PD2	775 aa		11.77	□□□□□ -0.53
PRKCH-222	ENST00000556778	PLEKHF1	Q96S99	279 aa		11.77	□□□□□ -0.53
PRKCH-222	ENST00000556778	FCHSD2	O94868	740 aa		11.76	□□□□□ -0.53
PRKCH-222	ENST00000556778	CHRM1	P11229	460 aa	Predicted RBP	11.76	□□□□□ -0.53
PRKCH-222	ENST00000556778	CCDC146	Q8IYE0	955 aa		11.76	□□□□□ -0.53
PRKCH-222	ENST00000556778	ADAMTS8	Q9UP79	889 aa		11.76	□□□□□ -0.53
PRKCH-222	ENST00000556778	RGPD1	P0DJD0	1748 aa		11.76	□□□□□ -0.53
PRKCH-222	ENST00000556778	PLSCR1	O15162	318 aa		11.75	□□□□□ -0.53
PRKCH-222	ENST00000556778	TXNRD1	Q16881	649 aa		11.75	□□□□□ -0.53
PRKCH-222	ENST00000556778	C1orf141	Q5JVX7	400 aa		11.75	□□□□□ -0.53
PRKCH-222	ENST00000556778	NFATC2IP	Q8NCF5	419 aa		11.75	□□□□□ -0.53
PRKCH-222	ENST00000556778	IL17RE	Q8NFR9	667 aa		11.75	□□□□□ -0.53
PRKCH-222	ENST00000556778	DCAF5	Q96JK2	942 aa		11.75	□□□□□ -0.53
PRKCH-222	ENST00000556778	LRRC4B	Q9NT99	713 aa		11.75	□□□□□ -0.53
PRKCH-222	ENST00000556778	ASAP1	Q9ULH1	1129 aa		11.75	□□□□□ -0.53
PRKCH-222	ENST00000556778	KDM6A	O15550	1401 aa	Predicted RBP	11.75	□□□□□ -0.53
PRKCH-222	ENST00000556778	DCTN1	Q14203	1278 aa		11.74	□□□□□ -0.53
PRKCH-222	ENST00000556778	AKAP4	Q5JQC9	854 aa		11.74	□□□□□ -0.53
PRKCH-222	ENST00000556778	WNK3	Q9BYP7	1800 aa		11.74	□□□□□ -0.53
PRKCH-222	ENST00000556778	PSD	A5PKW4	1024 aa	Predicted RBP	11.73	□□□□□ -0.53
PRKCH-222	ENST00000556778	RNMT	O43148	476 aa	Known RBP	11.73	□□□□□ -0.53
PRKCH-222	ENST00000556778	CABP4	P57796	275 aa		11.73	□□□□□ -0.53
PRKCH-222	ENST00000556778	ATG3	Q9NT62	314 aa		11.73	□□□□□ -0.53
PRKCH-222	ENST00000556778	TMOD3	Q9NYL9	352 aa		11.73	□□□□□ -0.53
PRKCH-222	ENST00000556778	ERVV-2	B6SEH9	535 aa		11.72	□□□□□ -0.53
PRKCH-222	ENST00000556778	ASTL	Q6HA08	431 aa	Predicted RBP	11.72	□□□□□ -0.53
PRKCH-222	ENST00000556778	MCM10	Q7L590	875 aa		11.72	□□□□□ -0.53
PRKCH-222	ENST00000556778	BMP2K	Q9NSY1	1161 aa	Predicted RBP	11.72	□□□□□ -0.53
PRKCH-222	ENST00000556778	RRP7A	Q9Y3A4	280 aa	Known RBP	11.72	□□□□□ -0.53
PRKCH-222	ENST00000556778	SHANK3	Q9BYB0	1731 aa		11.72	□□□□□ -0.53
PRKCH-222	ENST00000556778	GNAT3	A8MTJ3	354 aa		11.71	□□□□□ -0.53
PRKCH-222	ENST00000556778	HSP90AB1	P08238	724 aa	Known RBP	11.71	□□□□□ -0.53
PRKCH-222	ENST00000556778	GAS2L2	Q8NHY3	880 aa		11.71	□□□□□ -0.53
PRKCH-222	ENST00000556778	PNISR	Q8TF01	805 aa	Known RBP	11.71	□□□□□ -0.53
PRKCH-222	ENST00000556778	THUMPD2	Q9BTF0	503 aa	Known RBP	11.71	□□□□□ -0.53
PRKCH-222	ENST00000556778	ANO8	Q9HCE9	1232 aa	Predicted RBP	11.71	□□□□□ -0.53
PRKCH-222	ENST00000556778	MRS2	Q9HD23	443 aa		11.71	□□□□□ -0.53
PRKCH-222	ENST00000556778	PCDHB8	Q9UN66	801 aa		11.71	□□□□□ -0.53
PRKCH-222	ENST00000556778	ATMIN	O43313	823 aa	Predicted RBP	11.7	□□□□□ -0.54
PRKCH-222	ENST00000556778	TIE1	P35590	1138 aa		11.7	□□□□□ -0.54
PRKCH-222	ENST00000556778	SLC39A6	Q13433	755 aa		11.7	□□□□□ -0.54
PRKCH-222	ENST00000556778	R3HDM1	Q15032	1099 aa	Known RBP	11.7	□□□□□ -0.54
PRKCH-222	ENST00000556778	WDR43	Q15061	677 aa	Known RBP eCLIP	11.7	□□□□□ -0.54
PRKCH-222	ENST00000556778	SMIM5	Q71RC9	77 aa		11.7	□□□□□ -0.54
PRKCH-222	ENST00000556778	SLC4A9	Q96Q91	983 aa		11.7	□□□□□ -0.54
PRKCH-222	ENST00000556778	PDGFD	Q9GZP0	370 aa	Predicted RBP	11.7	□□□□□ -0.54
PRKCH-222	ENST00000556778	NEUROD2	Q15784	382 aa		11.69	□□□□□ -0.54
PRKCH-222	ENST00000556778	SLC52A2	Q9HAB3	445 aa		11.69	□□□□□ -0.54
PRKCH-222	ENST00000556778	MIS18A	Q9NYP9	233 aa		11.69	□□□□□ -0.54
PRKCH-222	ENST00000556778	CCNL1	Q9UK58	526 aa	Predicted RBP	11.69	□□□□□ -0.54
PRKCH-222	ENST00000556778	PALLD	Q8WX93	1383 aa		11.68	□□□□□ -0.54
PRKCH-222	ENST00000556778	MAP3K5	Q99683	1374 aa		11.68	□□□□□ -0.54
PRKCH-222	ENST00000556778	PLEKHG2	Q9H7P9	1386 aa		11.68	□□□□□ -0.54
PRKCH-222	ENST00000556778	KCNQ3	O43525	872 aa		11.68	□□□□□ -0.54
PRKCH-222	ENST00000556778	PTCD1	O75127	700 aa	Known RBP	11.68	□□□□□ -0.54
PRKCH-222	ENST00000556778	ITPK1	Q13572	414 aa		11.68	□□□□□ -0.54
PRKCH-222	ENST00000556778	NFE2L2	Q16236	605 aa		11.68	□□□□□ -0.54
PRKCH-222	ENST00000556778	ZNF827	Q17R98	1081 aa		11.68	□□□□□ -0.54
PRKCH-222	ENST00000556778	PKD1L3	Q7Z443	1732 aa		11.68	□□□□□ -0.54
PRKCH-222	ENST00000556778	TNS1	Q9HBL0	1735 aa	Known RBP	11.68	□□□□□ -0.54
PRKCH-222	ENST00000556778	TMPO	P42166	694 aa	Known RBP	11.67	□□□□□ -0.54
PRKCH-222	ENST00000556778	RIPK4	P57078	832 aa		11.67	□□□□□ -0.54
PRKCH-222	ENST00000556778	DIEXF	Q68CQ4	756 aa	Known RBP	11.67	□□□□□ -0.54
PRKCH-222	ENST00000556778	ZNF467	Q7Z7K2	595 aa	Predicted RBP	11.67	□□□□□ -0.54
PRKCH-222	ENST00000556778	PELP1	Q8IZL8	1130 aa	Known RBP	11.67	□□□□□ -0.54

Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms