RNA–Protein interactions for RNA: ENST00000555773.5

SHMT2-221, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 600 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-221ENST00000555773 MYH16Q9H6N6 1097 aa16.23■□□□□ 0.19
SHMT2-221ENST00000555773 LAS1LQ9Y4W2 734 aaKnown RBP16.23■□□□□ 0.19
SHMT2-221ENST00000555773 KCNQ2O43526 872 aa16.22■□□□□ 0.19
SHMT2-221ENST00000555773 SLFN5Q08AF3 891 aa16.22■□□□□ 0.19
SHMT2-221ENST00000555773 TSPYL4Q9UJ04 414 aa16.21■□□□□ 0.19
SHMT2-221ENST00000555773 SHANK3Q9BYB0 1731 aa16.2■□□□□ 0.18
SHMT2-221ENST00000555773 ZNF790Q6PG37 636 aa16.2■□□□□ 0.18
SHMT2-221ENST00000555773 TRMT2AQ8IZ69 625 aaKnown RBP16.2■□□□□ 0.18
SHMT2-221ENST00000555773 SMARCC1Q92922 1105 aaPredicted RBP16.2■□□□□ 0.18
SHMT2-221ENST00000555773 SPINK5Q9NQ38 1064 aaPredicted RBP16.2■□□□□ 0.18
SHMT2-221ENST00000555773 MIS18AQ9NYP9 233 aa16.2■□□□□ 0.18
SHMT2-221ENST00000555773 ADAMTS7Q9UKP4 1686 aa16.19■□□□□ 0.18
SHMT2-221ENST00000555773 MRC1P22897 1456 aa16.19■□□□□ 0.18
SHMT2-221ENST00000555773 TTC5Q8N0Z6 440 aa16.19■□□□□ 0.18
SHMT2-221ENST00000555773 CDCA7LQ96GN5 454 aa16.19■□□□□ 0.18
SHMT2-221ENST00000555773 MBIPQ9NS73 344 aa16.19■□□□□ 0.18
SHMT2-221ENST00000555773 ATG3Q9NT62 314 aa16.19■□□□□ 0.18
SHMT2-221ENST00000555773 TRIM37O94972 964 aa16.18■□□□□ 0.18
SHMT2-221ENST00000555773 ILDR2Q71H61 639 aa16.18■□□□□ 0.18
SHMT2-221ENST00000555773 SLC39A6Q13433 755 aa16.17■□□□□ 0.18
SHMT2-221ENST00000555773 ASAP1Q9ULH1 1129 aa16.17■□□□□ 0.18
SHMT2-221ENST00000555773 DLG5Q8TDM6 1919 aa16.16■□□□□ 0.18
SHMT2-221ENST00000555773 EIF4A1P60842 406 aaKnown RBP16.16■□□□□ 0.18
SHMT2-221ENST00000555773 DUSP27Q5VZP5 1158 aa16.16■□□□□ 0.18
SHMT2-221ENST00000555773 CCDC125Q86Z20 511 aa16.16■□□□□ 0.18
SHMT2-221ENST00000555773 TSR2Q969E8 191 aaKnown RBP16.16■□□□□ 0.18
SHMT2-221ENST00000555773 FANCIQ9NVI1 1328 aa16.16■□□□□ 0.18
SHMT2-221ENST00000555773 KCNQ3O43525 872 aa16.15■□□□□ 0.18
SHMT2-221ENST00000555773 PTF1AQ7RTS3 328 aa16.15■□□□□ 0.18
SHMT2-221ENST00000555773 FMNL2Q96PY5 1086 aa16.15■□□□□ 0.18
SHMT2-221ENST00000555773 SCN11AQ9UI33 1791 aa16.15■□□□□ 0.18
SHMT2-221ENST00000555773 BRWD3Q6RI45 1802 aa16.15■□□□□ 0.18
SHMT2-221ENST00000555773 PLSCR1O15162 318 aa16.14■□□□□ 0.17
SHMT2-221ENST00000555773 HMGB2P26583 209 aaKnown RBP16.14■□□□□ 0.17
SHMT2-221ENST00000555773 VSIG10Q8N0Z9 540 aa16.14■□□□□ 0.17
SHMT2-221ENST00000555773 CHMP4AQ9BY43 222 aa16.14■□□□□ 0.17
SHMT2-221ENST00000555773 SOS1Q07889 1333 aaPredicted RBP16.14■□□□□ 0.17
SHMT2-221ENST00000555773 APBA3O96018 575 aa16.13■□□□□ 0.17
SHMT2-221ENST00000555773 SNRPA1P09661 255 aaKnown RBP16.13■□□□□ 0.17
SHMT2-221ENST00000555773 ZNF496Q96IT1 587 aaPredicted RBP16.13■□□□□ 0.17
SHMT2-221ENST00000555773 TEX13AQ9BXU3 409 aaPredicted RBP16.13■□□□□ 0.17
SHMT2-221ENST00000555773 PTCD1O75127 700 aaKnown RBP16.12■□□□□ 0.17
SHMT2-221ENST00000555773 HOXB7P09629 217 aa16.12■□□□□ 0.17
SHMT2-221ENST00000555773 CT47B1P0C2W7 299 aaPredicted RBP16.12■□□□□ 0.17
SHMT2-221ENST00000555773 EXOSC9Q06265 439 aaKnown RBP16.12■□□□□ 0.17
SHMT2-221ENST00000555773 SF3B2Q13435 895 aaKnown RBP16.12■□□□□ 0.17
SHMT2-221ENST00000555773 RBM42Q9BTD8 480 aaKnown RBP16.12■□□□□ 0.17
SHMT2-221ENST00000555773 PALLDQ8WX93 1383 aa16.12■□□□□ 0.17
SHMT2-221ENST00000555773 HEG1Q9ULI3 1381 aa16.12■□□□□ 0.17
SHMT2-221ENST00000555773 KAT6BQ8WYB5 2073 aa16.11■□□□□ 0.17
SHMT2-221ENST00000555773 LOC102724428A0A0B4J2F2 783 aa16.11■□□□□ 0.17
SHMT2-221ENST00000555773 GIGYF1O75420 1035 aaPredicted RBP16.11■□□□□ 0.17
SHMT2-221ENST00000555773 SIK1P57059 783 aa16.11■□□□□ 0.17
SHMT2-221ENST00000555773 C8orf58Q8NAV2 365 aa16.1■□□□□ 0.17
SHMT2-221ENST00000555773 TOGARAM1Q9Y4F4 1720 aa16.1■□□□□ 0.17
SHMT2-221ENST00000555773 TWISTNBQ3B726 338 aaPredicted RBP16.09■□□□□ 0.17
SHMT2-221ENST00000555773 SLC27A3Q5K4L6 730 aa16.09■□□□□ 0.17
SHMT2-221ENST00000555773 ZNF428Q96B54 188 aa16.09■□□□□ 0.17
SHMT2-221ENST00000555773 ELL2O00472 640 aaPredicted RBP16.08■□□□□ 0.16
SHMT2-221ENST00000555773 VAMP4O75379 141 aa16.08■□□□□ 0.16
SHMT2-221ENST00000555773 ATP6V1AP38606 617 aa16.08■□□□□ 0.16
SHMT2-221ENST00000555773 TSPYL6Q8N831 410 aa16.08■□□□□ 0.16
SHMT2-221ENST00000555773 NHSQ6T4R5 1651 aa16.08■□□□□ 0.16
SHMT2-221ENST00000555773 DOT1LQ8TEK3 1739 aa16.08■□□□□ 0.16
SHMT2-221ENST00000555773 STARD3NLO95772 234 aa16.07■□□□□ 0.16
SHMT2-221ENST00000555773 BAG6P46379 1132 aa16.07■□□□□ 0.16
SHMT2-221ENST00000555773 KRT24Q2M2I5 525 aa16.07■□□□□ 0.16
SHMT2-221ENST00000555773 SLC4A9Q96Q91 983 aa16.07■□□□□ 0.16
SHMT2-221ENST00000555773 CCNL1Q9UK58 526 aaPredicted RBP16.07■□□□□ 0.16
SHMT2-221ENST00000555773 USP16Q9Y5T5 823 aa16.06■□□□□ 0.16
SHMT2-221ENST00000555773 ITGB4P16144 1822 aa16.05■□□□□ 0.16
SHMT2-221ENST00000555773 SIPA1L3O60292 1781 aaPredicted RBP16.05■□□□□ 0.16
SHMT2-221ENST00000555773 EP400Q96L91 3159 aa16.05■□□□□ 0.16
SHMT2-221ENST00000555773 TXNRD1Q16881 649 aa16.05■□□□□ 0.16
SHMT2-221ENST00000555773 CCDC30Q5VVM6 783 aa16.05■□□□□ 0.16
SHMT2-221ENST00000555773 DNAJC10Q8IXB1 793 aa16.05■□□□□ 0.16
SHMT2-221ENST00000555773 KCPQ6ZWJ8 1503 aa16.04■□□□□ 0.16
SHMT2-221ENST00000555773 SBF2Q86WG5 1849 aa16.04■□□□□ 0.16
SHMT2-221ENST00000555773 HDGFL1Q5TGJ6 251 aa16.04■□□□□ 0.16
SHMT2-221ENST00000555773 PROM2Q8N271 834 aa16.04■□□□□ 0.16
SHMT2-221ENST00000555773 UPF1Q92900 1129 aaKnown RBP eCLIP16.04■□□□□ 0.16
SHMT2-221ENST00000555773 CAMKK2Q96RR4 588 aa16.04■□□□□ 0.16
SHMT2-221ENST00000555773 PRAMEF22A3QJZ6 481 aa16.03■□□□□ 0.16
SHMT2-221ENST00000555773 CYP19A1P11511 503 aaPredicted RBP16.03■□□□□ 0.16
SHMT2-221ENST00000555773 EIF2S2P20042 333 aaKnown RBP16.03■□□□□ 0.16
SHMT2-221ENST00000555773 ITPK1Q13572 414 aa16.03■□□□□ 0.16
SHMT2-221ENST00000555773 RC3H1Q5TC82 1133 aaKnown RBP16.03■□□□□ 0.16
SHMT2-221ENST00000555773 ERBB4Q15303 1308 aa16.02■□□□□ 0.16
SHMT2-221ENST00000555773 EN1Q05925 392 aaPredicted RBP16.02■□□□□ 0.16
SHMT2-221ENST00000555773 ALDH1L2Q3SY69 923 aa16.02■□□□□ 0.16
SHMT2-221ENST00000555773 LRRC4BQ9NT99 713 aa16.02■□□□□ 0.16
SHMT2-221ENST00000555773 DBF4Q9UBU7 674 aaPredicted RBP16.02■□□□□ 0.16
SHMT2-221ENST00000555773 KDM3BQ7LBC6 1761 aa16.02■□□□□ 0.15
SHMT2-221ENST00000555773 RARSP54136 660 aaKnown RBP16.01■□□□□ 0.15
SHMT2-221ENST00000555773 STK31Q9BXU1 1019 aa16.01■□□□□ 0.15
SHMT2-221ENST00000555773 VIRMAQ69YN4 1812 aaKnown RBP16.01■□□□□ 0.15
SHMT2-221ENST00000555773 SOCS7O14512 581 aa16■□□□□ 0.15
SHMT2-221ENST00000555773 CENPBP07199 599 aaPredicted RBP16■□□□□ 0.15
SHMT2-221ENST00000555773 EZH2Q15910 746 aaKnown RBP16■□□□□ 0.15
SHMT2-221ENST00000555773 DDX21Q9NR30 783 aaKnown RBP eCLIP16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 123.6 ms