RNA–Protein interactions for RNA: ENST00000554879.5

PCNX1-209, Transcript of pecanex 1, humanhuman

TSL 1 (best)

Gene PCNX1, Length 4,431 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCNX1-209ENST00000554879 DIP2AQ14689 1571 aa20.39■□□□□ 0.86
PCNX1-209ENST00000554879 ARHGAP23Q9P227 1491 aa20.39■□□□□ 0.85
PCNX1-209ENST00000554879 NCBP3Q53F19 620 aaKnown RBP20.39■□□□□ 0.85
PCNX1-209ENST00000554879 MEIS3Q99687 375 aa20.39■□□□□ 0.85
PCNX1-209ENST00000554879 NFATC2IPQ8NCF5 419 aa20.39■□□□□ 0.85
PCNX1-209ENST00000554879 PIP4K2AP48426 406 aaPredicted RBP20.38■□□□□ 0.85
PCNX1-209ENST00000554879 CHD1LQ86WJ1 897 aa20.38■□□□□ 0.85
PCNX1-209ENST00000554879 BCL11BQ9C0K0 894 aaPredicted RBP20.38■□□□□ 0.85
PCNX1-209ENST00000554879 SLIT1O75093 1534 aa20.38■□□□□ 0.85
PCNX1-209ENST00000554879 CHPF2Q9P2E5 772 aa20.38■□□□□ 0.85
PCNX1-209ENST00000554879 HTATSF1O43719 755 aaKnown RBP20.38■□□□□ 0.85
PCNX1-209ENST00000554879 SURF6O75683 361 aaKnown RBP20.38■□□□□ 0.85
PCNX1-209ENST00000554879 EXOC6BQ9Y2D4 811 aa20.38■□□□□ 0.85
PCNX1-209ENST00000554879 MAPK8IP2Q13387 824 aaPredicted RBP20.37■□□□□ 0.85
PCNX1-209ENST00000554879 AXIN2Q9Y2T1 843 aa20.37■□□□□ 0.85
PCNX1-209ENST00000554879 ARHGAP45Q92619 1136 aa20.37■□□□□ 0.85
PCNX1-209ENST00000554879 GCC1Q96CN9 775 aa20.37■□□□□ 0.85
PCNX1-209ENST00000554879 LRRC7Q96NW7 1537 aa20.36■□□□□ 0.85
PCNX1-209ENST00000554879 PI4KAP2A4QPH2 592 aa20.36■□□□□ 0.85
PCNX1-209ENST00000554879 SMARCA5O60264 1052 aaPredicted RBP20.36■□□□□ 0.85
PCNX1-209ENST00000554879 PI4KAP1Q8N8J0 262 aa20.36■□□□□ 0.85
PCNX1-209ENST00000554879 HDAC5Q9UQL6 1122 aa20.36■□□□□ 0.85
PCNX1-209ENST00000554879 KCNQ3O43525 872 aa20.35■□□□□ 0.85
PCNX1-209ENST00000554879 HSP90AB1P08238 724 aaKnown RBP20.35■□□□□ 0.85
PCNX1-209ENST00000554879 NPHP1O15259 732 aa20.35■□□□□ 0.85
PCNX1-209ENST00000554879 RNMTO43148 476 aaKnown RBP20.35■□□□□ 0.85
PCNX1-209ENST00000554879 PHAXQ9H814 394 aaKnown RBP20.35■□□□□ 0.85
PCNX1-209ENST00000554879 ZBTB40Q9NUA8 1239 aa20.35■□□□□ 0.85
PCNX1-209ENST00000554879 PTPRCP08575 1304 aa20.35■□□□□ 0.85
PCNX1-209ENST00000554879 OVOS2A0A0J9YW53 1432 aa20.34■□□□□ 0.85
PCNX1-209ENST00000554879 OVOS2Q6IE36 1432 aa20.34■□□□□ 0.85
PCNX1-209ENST00000554879 BRINP3Q76B58 766 aa20.34■□□□□ 0.85
PCNX1-209ENST00000554879 ZHX1Q9UKY1 873 aaPredicted RBP20.34■□□□□ 0.85
PCNX1-209ENST00000554879 LMTK3Q96Q04 1460 aa20.33■□□□□ 0.84
PCNX1-209ENST00000554879 DNTTIP2Q5QJE6 756 aaKnown RBP20.33■□□□□ 0.84
PCNX1-209ENST00000554879 DBF4Q9UBU7 674 aaPredicted RBP20.33■□□□□ 0.84
PCNX1-209ENST00000554879 HSCBQ8IWL3 235 aa20.32■□□□□ 0.84
PCNX1-209ENST00000554879 ZCRB1Q8TBF4 217 aaKnown RBP20.32■□□□□ 0.84
PCNX1-209ENST00000554879 BBXQ8WY36 941 aaPredicted RBP20.32■□□□□ 0.84
PCNX1-209ENST00000554879 KIAA0232Q92628 1395 aa20.32■□□□□ 0.84
PCNX1-209ENST00000554879 LRRFIP2Q9Y608 721 aaKnown RBP20.32■□□□□ 0.84
PCNX1-209ENST00000554879 NCLP19338 710 aaKnown RBP20.32■□□□□ 0.84
PCNX1-209ENST00000554879 MEX3CQ5U5Q3 659 aaKnown RBP20.32■□□□□ 0.84
PCNX1-209ENST00000554879 USP31Q70CQ4 1352 aa20.31■□□□□ 0.84
PCNX1-209ENST00000554879 SRGAP3O43295 1099 aa20.31■□□□□ 0.84
PCNX1-209ENST00000554879 ZNF853P0CG23 659 aa20.31■□□□□ 0.84
PCNX1-209ENST00000554879 KCNJ4P48050 445 aa20.31■□□□□ 0.84
PCNX1-209ENST00000554879 RPAP2Q8IXW5 612 aaPredicted RBP20.31■□□□□ 0.84
PCNX1-209ENST00000554879 IL1RAPL2Q9NP60 686 aa20.31■□□□□ 0.84
PCNX1-209ENST00000554879 BTG4Q9NY30 223 aa20.31■□□□□ 0.84
PCNX1-209ENST00000554879 PRDM10Q9NQV6 1147 aa20.31■□□□□ 0.84
PCNX1-209ENST00000554879 MSNP26038 577 aaKnown RBP20.31■□□□□ 0.84
PCNX1-209ENST00000554879 DNAAF4Q8WXU2 420 aa20.31■□□□□ 0.84
PCNX1-209ENST00000554879 TAF7LQ5H9L4 462 aa20.3■□□□□ 0.84
PCNX1-209ENST00000554879 RRAGDQ9NQL2 400 aaPredicted RBP20.3■□□□□ 0.84
PCNX1-209ENST00000554879 KDM2BQ8NHM5 1336 aa20.3■□□□□ 0.84
PCNX1-209ENST00000554879 ZBTB7BO15156 539 aaPredicted RBP20.3■□□□□ 0.84
PCNX1-209ENST00000554879 PDIA4P13667 645 aaKnown RBP20.3■□□□□ 0.84
PCNX1-209ENST00000554879 KDM4FA0A1W2PPD8 638 aa20.29■□□□□ 0.84
PCNX1-209ENST00000554879 UBAP1LF5GYI3 381 aa20.29■□□□□ 0.84
PCNX1-209ENST00000554879 MAP2P11137 1827 aaKnown RBP20.29■□□□□ 0.84
PCNX1-209ENST00000554879 FOXD4L1Q9NU39 408 aa20.29■□□□□ 0.84
PCNX1-209ENST00000554879 SIL1Q9H173 461 aa20.28■□□□□ 0.84
PCNX1-209ENST00000554879 C1orf167Q5SNV9 1468 aa20.28■□□□□ 0.84
PCNX1-209ENST00000554879 TMOD3Q9NYL9 352 aa20.28■□□□□ 0.84
PCNX1-209ENST00000554879 MAP3K2Q9Y2U5 619 aa20.28■□□□□ 0.84
PCNX1-209ENST00000554879 JARID2Q92833 1246 aaPredicted RBP20.28■□□□□ 0.84
PCNX1-209ENST00000554879 ERBB3P21860 1342 aa20.27■□□□□ 0.84
PCNX1-209ENST00000554879 FAM177BA6PVY3 158 aa20.27■□□□□ 0.84
PCNX1-209ENST00000554879 G3BP1Q13283 466 aaKnown RBP eCLIP20.27■□□□□ 0.84
PCNX1-209ENST00000554879 HDAC1Q13547 482 aaPredicted RBP20.27■□□□□ 0.84
PCNX1-209ENST00000554879 FMNL2Q96PY5 1086 aa20.27■□□□□ 0.84
PCNX1-209ENST00000554879 C22orf23Q9BZE7 217 aa20.26■□□□□ 0.83
PCNX1-209ENST00000554879 NRXN3Q9Y4C0 1643 aa20.26■□□□□ 0.83
PCNX1-209ENST00000554879 IL2RBP14784 551 aa20.26■□□□□ 0.83
PCNX1-209ENST00000554879 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.25■□□□□ 0.83
PCNX1-209ENST00000554879 IFIT2P09913 472 aaKnown RBP20.25■□□□□ 0.83
PCNX1-209ENST00000554879 MYD88Q99836 296 aa20.25■□□□□ 0.83
PCNX1-209ENST00000554879 NOL8Q76FK4 1167 aaKnown RBP20.24■□□□□ 0.83
PCNX1-209ENST00000554879 LRRCC1Q9C099 1032 aa20.24■□□□□ 0.83
PCNX1-209ENST00000554879 USP19O94966 1318 aa20.24■□□□□ 0.83
PCNX1-209ENST00000554879 EXOC5O00471 708 aa20.24■□□□□ 0.83
PCNX1-209ENST00000554879 GPATCH3Q96I76 525 aa20.24■□□□□ 0.83
PCNX1-209ENST00000554879 NGLY1Q96IV0 654 aa20.24■□□□□ 0.83
PCNX1-209ENST00000554879 ATP5J2-PTCD1G3V325 749 aa20.24■□□□□ 0.83
PCNX1-209ENST00000554879 FGD1P98174 961 aa20.24■□□□□ 0.83
PCNX1-209ENST00000554879 KIAA1211Q6ZU35 1233 aa20.24■□□□□ 0.83
PCNX1-209ENST00000554879 ITSN1Q15811 1721 aa20.23■□□□□ 0.83
PCNX1-209ENST00000554879 IQSEC2Q5JU85 1478 aa20.23■□□□□ 0.83
PCNX1-209ENST00000554879 EIF4A1P60842 406 aaKnown RBP20.23■□□□□ 0.83
PCNX1-209ENST00000554879 GORABQ5T7V8 394 aa20.23■□□□□ 0.83
PCNX1-209ENST00000554879 COL3A1P02461 1466 aaPredicted RBP20.23■□□□□ 0.83
PCNX1-209ENST00000554879 SPATA31A3Q5VYP0 1347 aa20.23■□□□□ 0.83
PCNX1-209ENST00000554879 RTL1A6NKG5 1358 aa20.23■□□□□ 0.83
PCNX1-209ENST00000554879 TOM1O60784 492 aa20.23■□□□□ 0.83
PCNX1-209ENST00000554879 LARP1Q6PKG0 1096 aaKnown RBP20.23■□□□□ 0.83
PCNX1-209ENST00000554879 TSHZ3Q63HK5 1081 aa20.22■□□□□ 0.83
PCNX1-209ENST00000554879 ZNF790Q6PG37 636 aa20.22■□□□□ 0.83
PCNX1-209ENST00000554879 COPS6Q7L5N1 327 aa20.22■□□□□ 0.83
PCNX1-209ENST00000554879 DCAF5Q96JK2 942 aa20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 80.9 ms