RNA–Protein interactions for RNA: ENST00000542772.1

ABCF1-207, Transcript of ATP binding cassette subfamily F member 1, humanhuman

TSL 3

Gene ABCF1, Length 223 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCF1-207ENST00000542772 THUMPD2Q9BTF0 503 aaKnown RBP7.68□□□□□ -1.18
ABCF1-207ENST00000542772 SPINK5Q9NQ38 1064 aaPredicted RBP7.68□□□□□ -1.18
ABCF1-207ENST00000542772 IFT57Q9NWB7 429 aa7.68□□□□□ -1.18
ABCF1-207ENST00000542772 SALL2Q9Y467 1007 aaPredicted RBP7.68□□□□□ -1.18
ABCF1-207ENST00000542772 SIPA1L3O60292 1781 aaPredicted RBP7.68□□□□□ -1.18
ABCF1-207ENST00000542772 ITGB4P16144 1822 aa7.68□□□□□ -1.18
ABCF1-207ENST00000542772 PLSCR1O15162 318 aa7.67□□□□□ -1.18
ABCF1-207ENST00000542772 CCDC125Q86Z20 511 aa7.67□□□□□ -1.18
ABCF1-207ENST00000542772 HEG1Q9ULI3 1381 aa7.67□□□□□ -1.18
ABCF1-207ENST00000542772 MRC1P22897 1456 aa7.67□□□□□ -1.18
ABCF1-207ENST00000542772 TOGARAM1Q9Y4F4 1720 aa7.66□□□□□ -1.18
ABCF1-207ENST00000542772 SENP3-EIF4A1A0A087X0R7 540 aa7.66□□□□□ -1.18
ABCF1-207ENST00000542772 BTBD11A6QL63 1104 aa7.66□□□□□ -1.18
ABCF1-207ENST00000542772 E9PSI1 815 aa7.66□□□□□ -1.18
ABCF1-207ENST00000542772 ZNF790Q6PG37 636 aa7.66□□□□□ -1.18
ABCF1-207ENST00000542772 PTF1AQ7RTS3 328 aa7.66□□□□□ -1.18
ABCF1-207ENST00000542772 CDCA7LQ96GN5 454 aa7.66□□□□□ -1.18
ABCF1-207ENST00000542772 ACSBG1Q96GR2 724 aa7.66□□□□□ -1.18
ABCF1-207ENST00000542772 ATG3Q9NT62 314 aa7.66□□□□□ -1.18
ABCF1-207ENST00000542772 TMOD3Q9NYL9 352 aa7.66□□□□□ -1.18
ABCF1-207ENST00000542772 TRIM37O94972 964 aa7.65□□□□□ -1.18
ABCF1-207ENST00000542772 EIF4A1P60842 406 aaKnown RBP7.65□□□□□ -1.18
ABCF1-207ENST00000542772 DUSP27Q5VZP5 1158 aa7.65□□□□□ -1.18
ABCF1-207ENST00000542772 VSIG10Q8N0Z9 540 aa7.65□□□□□ -1.18
ABCF1-207ENST00000542772 KAT6BQ8WYB5 2073 aa7.65□□□□□ -1.18
ABCF1-207ENST00000542772 SMARCC1Q92922 1105 aaPredicted RBP7.65□□□□□ -1.18
ABCF1-207ENST00000542772 MBIPQ9NS73 344 aa7.65□□□□□ -1.18
ABCF1-207ENST00000542772 MIS18AQ9NYP9 233 aa7.65□□□□□ -1.18
ABCF1-207ENST00000542772 ASAP1Q9ULH1 1129 aa7.65□□□□□ -1.18
ABCF1-207ENST00000542772 EP400Q96L91 3159 aa7.65□□□□□ -1.19
ABCF1-207ENST00000542772 DOT1LQ8TEK3 1739 aa7.64□□□□□ -1.19
ABCF1-207ENST00000542772 NHSQ6T4R5 1651 aa7.64□□□□□ -1.19
ABCF1-207ENST00000542772 KCNQ3O43525 872 aa7.64□□□□□ -1.19
ABCF1-207ENST00000542772 SLC39A6Q13433 755 aa7.64□□□□□ -1.19
ABCF1-207ENST00000542772 MYH16Q9H6N6 1097 aa7.64□□□□□ -1.19
ABCF1-207ENST00000542772 KDM3BQ7LBC6 1761 aa7.64□□□□□ -1.19
ABCF1-207ENST00000542772 SOS1Q07889 1333 aaPredicted RBP7.63□□□□□ -1.19
ABCF1-207ENST00000542772 VAMP4O75379 141 aa7.63□□□□□ -1.19
ABCF1-207ENST00000542772 GIGYF1O75420 1035 aaPredicted RBP7.63□□□□□ -1.19
ABCF1-207ENST00000542772 ILDR2Q71H61 639 aa7.63□□□□□ -1.19
ABCF1-207ENST00000542772 PROM2Q8N271 834 aa7.63□□□□□ -1.19
ABCF1-207ENST00000542772 SYTL4Q96C24 671 aaPredicted RBP7.63□□□□□ -1.19
ABCF1-207ENST00000542772 ZNF496Q96IT1 587 aaPredicted RBP7.63□□□□□ -1.19
ABCF1-207ENST00000542772 SLC4A9Q96Q91 983 aa7.63□□□□□ -1.19
ABCF1-207ENST00000542772 TSPYL4Q9UJ04 414 aa7.63□□□□□ -1.19
ABCF1-207ENST00000542772 ZNF831Q5JPB2 1677 aa7.63□□□□□ -1.19
ABCF1-207ENST00000542772 PAPPAQ13219 1627 aa7.63□□□□□ -1.19
ABCF1-207ENST00000542772 BTAF1O14981 1849 aa7.62□□□□□ -1.19
ABCF1-207ENST00000542772 UBR2Q8IWV8 1755 aa7.62□□□□□ -1.19
ABCF1-207ENST00000542772 HOXB7P09629 217 aa7.62□□□□□ -1.19
ABCF1-207ENST00000542772 SNRPA1P09661 255 aaKnown RBP7.62□□□□□ -1.19
ABCF1-207ENST00000542772 CT47B1P0C2W7 299 aaPredicted RBP7.62□□□□□ -1.19
ABCF1-207ENST00000542772 HMGB2P26583 209 aaKnown RBP7.62□□□□□ -1.19
ABCF1-207ENST00000542772 TTC5Q8N0Z6 440 aa7.62□□□□□ -1.19
ABCF1-207ENST00000542772 C8orf58Q8NAV2 365 aa7.62□□□□□ -1.19
ABCF1-207ENST00000542772 UPF1Q92900 1129 aaKnown RBP eCLIP7.62□□□□□ -1.19
ABCF1-207ENST00000542772 FMNL2Q96PY5 1086 aa7.62□□□□□ -1.19
ABCF1-207ENST00000542772 TEX13AQ9BXU3 409 aaPredicted RBP7.62□□□□□ -1.19
ABCF1-207ENST00000542772 LAS1LQ9Y4W2 734 aaKnown RBP7.62□□□□□ -1.19
ABCF1-207ENST00000542772 LY75O60449 1722 aa7.61□□□□□ -1.19
ABCF1-207ENST00000542772 FANCIQ9NVI1 1328 aa7.61□□□□□ -1.19
ABCF1-207ENST00000542772 LOC102724428A0A0B4J2F2 783 aa7.61□□□□□ -1.19
ABCF1-207ENST00000542772 APBA3O96018 575 aa7.61□□□□□ -1.19
ABCF1-207ENST00000542772 SIK1P57059 783 aa7.61□□□□□ -1.19
ABCF1-207ENST00000542772 EXOSC9Q06265 439 aaKnown RBP7.61□□□□□ -1.19
ABCF1-207ENST00000542772 SLC27A3Q5K4L6 730 aa7.61□□□□□ -1.19
ABCF1-207ENST00000542772 TSPYL6Q8N831 410 aa7.61□□□□□ -1.19
ABCF1-207ENST00000542772 TSR2Q969E8 191 aaKnown RBP7.61□□□□□ -1.19
ABCF1-207ENST00000542772 CAMKK2Q96RR4 588 aa7.61□□□□□ -1.19
ABCF1-207ENST00000542772 CHMP4AQ9BY43 222 aa7.61□□□□□ -1.19
ABCF1-207ENST00000542772 USP16Q9Y5T5 823 aa7.61□□□□□ -1.19
ABCF1-207ENST00000542772 KCPQ6ZWJ8 1503 aa7.61□□□□□ -1.19
ABCF1-207ENST00000542772 PALLDQ8WX93 1383 aa7.6□□□□□ -1.19
ABCF1-207ENST00000542772 PTCD1O75127 700 aaKnown RBP7.6□□□□□ -1.19
ABCF1-207ENST00000542772 CYP19A1P11511 503 aaPredicted RBP7.6□□□□□ -1.19
ABCF1-207ENST00000542772 BRPF1P55201 1214 aaPredicted RBP7.6□□□□□ -1.19
ABCF1-207ENST00000542772 TXNRD1Q16881 649 aa7.6□□□□□ -1.19
ABCF1-207ENST00000542772 RC3H1Q5TC82 1133 aaKnown RBP7.6□□□□□ -1.19
ABCF1-207ENST00000542772 ZNF428Q96B54 188 aa7.6□□□□□ -1.19
ABCF1-207ENST00000542772 YTHDC1Q96MU7 727 aaKnown RBP7.6□□□□□ -1.19
ABCF1-207ENST00000542772 LRRC4BQ9NT99 713 aa7.6□□□□□ -1.19
ABCF1-207ENST00000542772 CICQ96RK0 1608 aaPredicted RBP7.6□□□□□ -1.19
ABCF1-207ENST00000542772 TNS1Q9HBL0 1735 aaKnown RBP7.59□□□□□ -1.19
ABCF1-207ENST00000542772 PRAMEF22A3QJZ6 481 aa7.59□□□□□ -1.19
ABCF1-207ENST00000542772 ATP6V1AP38606 617 aa7.59□□□□□ -1.19
ABCF1-207ENST00000542772 ITPK1Q13572 414 aa7.59□□□□□ -1.19
ABCF1-207ENST00000542772 PDIA6Q15084 440 aa7.59□□□□□ -1.19
ABCF1-207ENST00000542772 KRT24Q2M2I5 525 aa7.59□□□□□ -1.19
ABCF1-207ENST00000542772 TWISTNBQ3B726 338 aaPredicted RBP7.59□□□□□ -1.19
ABCF1-207ENST00000542772 RBM42Q9BTD8 480 aaKnown RBP7.59□□□□□ -1.19
ABCF1-207ENST00000542772 RGPD3A6NKT7 1758 aaPredicted RBP7.59□□□□□ -1.2
ABCF1-207ENST00000542772 RGPD4Q7Z3J3 1758 aa7.59□□□□□ -1.2
ABCF1-207ENST00000542772 ELL2O00472 640 aaPredicted RBP7.58□□□□□ -1.2
ABCF1-207ENST00000542772 STARD3NLO95772 234 aa7.58□□□□□ -1.2
ABCF1-207ENST00000542772 BAG6P46379 1132 aa7.58□□□□□ -1.2
ABCF1-207ENST00000542772 EN1Q05925 392 aaPredicted RBP7.58□□□□□ -1.2
ABCF1-207ENST00000542772 SF3B2Q13435 895 aaKnown RBP7.58□□□□□ -1.2
ABCF1-207ENST00000542772 ALDH1L2Q3SY69 923 aa7.58□□□□□ -1.2
ABCF1-207ENST00000542772 INTS5Q6P9B9 1019 aaKnown RBP7.58□□□□□ -1.2
ABCF1-207ENST00000542772 LRP10Q7Z4F1 713 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms