RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, humanhuman

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-209ENST00000542286 MPRIPQ6WCQ1 1025 aa18.27■□□□□ 0.51
DDX55-209ENST00000542286 HSP90AA1P07900 732 aaKnown RBP18.26■□□□□ 0.51
DDX55-209ENST00000542286 ZMYND15Q9H091 742 aa18.26■□□□□ 0.51
DDX55-209ENST00000542286 XRCC6P12956 609 aaKnown RBP eCLIP18.26■□□□□ 0.518e-8■■■□□ 14.6
DDX55-209ENST00000542286 LRRFIP2Q9Y608 721 aaKnown RBP18.26■□□□□ 0.51
DDX55-209ENST00000542286 MAP3K5Q99683 1374 aa18.26■□□□□ 0.51
DDX55-209ENST00000542286 HAP1P54257 671 aaPredicted RBP18.25■□□□□ 0.51
DDX55-209ENST00000542286 TAF7Q15545 349 aaPredicted RBP18.25■□□□□ 0.51
DDX55-209ENST00000542286 HDGFL1Q5TGJ6 251 aa18.25■□□□□ 0.51
DDX55-209ENST00000542286 DDX17Q92841 729 aaKnown RBP18.25■□□□□ 0.51
DDX55-209ENST00000542286 HSP90AA2PQ14568 343 aaPredicted RBP18.24■□□□□ 0.51
DDX55-209ENST00000542286 CCDC30Q5VVM6 783 aa18.24■□□□□ 0.51
DDX55-209ENST00000542286 IL1RAPL2Q9NP60 686 aa18.24■□□□□ 0.51
DDX55-209ENST00000542286 KIF24Q5T7B8 1368 aa18.23■□□□□ 0.51
DDX55-209ENST00000542286 GOLGA6L3A6NEY3 463 aa18.23■□□□□ 0.51
DDX55-209ENST00000542286 GNAI2P04899 355 aa18.23■□□□□ 0.51
DDX55-209ENST00000542286 PRAMEF22A3QJZ6 481 aa18.23■□□□□ 0.51
DDX55-209ENST00000542286 CCT4P50991 539 aaKnown RBP18.23■□□□□ 0.51
DDX55-209ENST00000542286 TNPO1Q92973 898 aaKnown RBP18.23■□□□□ 0.51
DDX55-209ENST00000542286 CLCN1P35523 988 aa18.22■□□□□ 0.51
DDX55-209ENST00000542286 AK9Q5TCS8 1911 aa18.22■□□□□ 0.51
DDX55-209ENST00000542286 ANKARQ7Z5J8 1434 aa18.22■□□□□ 0.51
DDX55-209ENST00000542286 IP6K1Q92551 441 aa18.21■□□□□ 0.51
DDX55-209ENST00000542286 CHPF2Q9P2E5 772 aa18.21■□□□□ 0.51
DDX55-209ENST00000542286 MAP4K4O95819 1239 aaPredicted RBP18.21■□□□□ 0.51
DDX55-209ENST00000542286 DDIT3P35638 169 aa18.21■□□□□ 0.51
DDX55-209ENST00000542286 SNX21Q969T3 373 aa18.21■□□□□ 0.51
DDX55-209ENST00000542286 USP26Q9BXU7 913 aa18.21■□□□□ 0.51
DDX55-209ENST00000542286 PANK2Q9BZ23 570 aa18.21■□□□□ 0.51
DDX55-209ENST00000542286 USP44Q9H0E7 712 aa18.21■□□□□ 0.51
DDX55-209ENST00000542286 RGPD2P0DJD1 1756 aa18.2■□□□□ 0.5
DDX55-209ENST00000542286 PDE1AP54750 535 aa18.2■□□□□ 0.5
DDX55-209ENST00000542286 AXIN2Q9Y2T1 843 aa18.2■□□□□ 0.5
DDX55-209ENST00000542286 K7ELQ4 463 aaPredicted RBP18.2■□□□□ 0.5
DDX55-209ENST00000542286 ZNF530Q6P9A1 599 aaPredicted RBP18.2■□□□□ 0.5
DDX55-209ENST00000542286 LTN1O94822 1766 aa18.19■□□□□ 0.5
DDX55-209ENST00000542286 TRAK2O60296 914 aa18.19■□□□□ 0.5
DDX55-209ENST00000542286 SSFA2P28290 1259 aa18.19■□□□□ 0.5
DDX55-209ENST00000542286 FSD2A1L4K1 749 aa18.19■□□□□ 0.5
DDX55-209ENST00000542286 RRP9O43818 475 aaKnown RBP18.19■□□□□ 0.5
DDX55-209ENST00000542286 UNC5CLQ8IV45 518 aa18.19■□□□□ 0.5
DDX55-209ENST00000542286 HMMRO75330 724 aa18.19■□□□□ 0.5
DDX55-209ENST00000542286 ZC3H6P61129 1189 aaKnown RBP18.19■□□□□ 0.5
DDX55-209ENST00000542286 NUTM1Q86Y26 1132 aa18.19■□□□□ 0.5
DDX55-209ENST00000542286 RILPL2Q969X0 211 aa18.19■□□□□ 0.5
DDX55-209ENST00000542286 CHAMP1Q96JM3 812 aa18.19■□□□□ 0.5
DDX55-209ENST00000542286 NBPF7P0C2Y1 421 aaPredicted RBP18.18■□□□□ 0.5
DDX55-209ENST00000542286 PKP1Q13835 747 aa18.18■□□□□ 0.5
DDX55-209ENST00000542286 NCOA3Q9Y6Q9 1424 aa18.18■□□□□ 0.5
DDX55-209ENST00000542286 GCP02774 474 aa18.18■□□□□ 0.5
DDX55-209ENST00000542286 NOL8Q76FK4 1167 aaKnown RBP18.17■□□□□ 0.5
DDX55-209ENST00000542286 TRIM6-TRIM34B2RNG4 842 aa18.17■□□□□ 0.5
DDX55-209ENST00000542286 PROSER3Q2NL68 480 aa18.17■□□□□ 0.5
DDX55-209ENST00000542286 PI4KAP2A4QPH2 592 aa18.16■□□□□ 0.5
DDX55-209ENST00000542286 HTATSF1O43719 755 aaKnown RBP18.16■□□□□ 0.5
DDX55-209ENST00000542286 EIF4A1P60842 406 aaKnown RBP18.16■□□□□ 0.5
DDX55-209ENST00000542286 PI4KAP1Q8N8J0 262 aa18.16■□□□□ 0.5
DDX55-209ENST00000542286 LRRCC1Q9C099 1032 aa18.16■□□□□ 0.5
DDX55-209ENST00000542286 UBTFL1P0CB47 393 aaPredicted RBP18.15■□□□□ 0.5
DDX55-209ENST00000542286 IL25Q9H293 177 aa18.15■□□□□ 0.5
DDX55-209ENST00000542286 PXDNQ92626 1479 aa18.15■□□□□ 0.5
DDX55-209ENST00000542286 BTBD11A6QL63 1104 aa18.15■□□□□ 0.5
DDX55-209ENST00000542286 TEFQ10587 303 aa18.15■□□□□ 0.5
DDX55-209ENST00000542286 FAM208AQ9UK61 1670 aaKnown RBP18.14■□□□□ 0.5
DDX55-209ENST00000542286 ATP8B2P98198 1209 aa18.14■□□□□ 0.5
DDX55-209ENST00000542286 PPP1R42Q7Z4L9 355 aa18.14■□□□□ 0.5
DDX55-209ENST00000542286 ZGPATQ8N5A5 531 aaKnown RBP18.14■□□□□ 0.5
DDX55-209ENST00000542286 CHD2O14647 1828 aaKnown RBP18.14■□□□□ 0.49
DDX55-209ENST00000542286 FOXD4L5Q5VV16 416 aaPredicted RBP18.14■□□□□ 0.49
DDX55-209ENST00000542286 FOXD4L4Q8WXT5 416 aaPredicted RBP18.14■□□□□ 0.49
DDX55-209ENST00000542286 GNAI3P08754 354 aa18.13■□□□□ 0.49
DDX55-209ENST00000542286 MX1P20591 662 aa18.13■□□□□ 0.49
DDX55-209ENST00000542286 ANKRD24Q8TF21 1146 aa18.13■□□□□ 0.49
DDX55-209ENST00000542286 LRRC37A3O60309 1634 aa18.13■□□□□ 0.49
DDX55-209ENST00000542286 NFAT5O94916 1531 aa18.13■□□□□ 0.49
DDX55-209ENST00000542286 CABLES1Q8TDN4 633 aa18.13■□□□□ 0.49
DDX55-209ENST00000542286 SURF6O75683 361 aaKnown RBP18.13■□□□□ 0.49
DDX55-209ENST00000542286 PALD1Q9ULE6 856 aa18.13■□□□□ 0.49
DDX55-209ENST00000542286 RAB3GAP1Q15042 981 aa18.12■□□□□ 0.49
DDX55-209ENST00000542286 PROSER2Q86WR7 435 aaPredicted RBP18.12■□□□□ 0.49
DDX55-209ENST00000542286 ADGRL3Q9HAR2 1447 aa18.11■□□□□ 0.49
DDX55-209ENST00000542286 SRGAP3O43295 1099 aa18.11■□□□□ 0.49
DDX55-209ENST00000542286 PIP4K2AP48426 406 aaPredicted RBP18.11■□□□□ 0.49
DDX55-209ENST00000542286 SLC39A6Q13433 755 aa18.11■□□□□ 0.49
DDX55-209ENST00000542286 CEMIPQ8WUJ3 1361 aa18.11■□□□□ 0.49
DDX55-209ENST00000542286 DTNBO60941 627 aa18.11■□□□□ 0.49
DDX55-209ENST00000542286 ARHGEF25Q86VW2 580 aa18.11■□□□□ 0.49
DDX55-209ENST00000542286 SRCIN1Q9C0H9 1055 aa18.11■□□□□ 0.49
DDX55-209ENST00000542286 SOS1Q07889 1333 aaPredicted RBP18.1■□□□□ 0.49
DDX55-209ENST00000542286 SALL3Q9BXA9 1300 aa18.1■□□□□ 0.49
DDX55-209ENST00000542286 ERC2O15083 957 aa18.1■□□□□ 0.49
DDX55-209ENST00000542286 AIMP1Q12904 312 aaKnown RBP18.1■□□□□ 0.49
DDX55-209ENST00000542286 CWF19L2Q2TBE0 894 aaKnown RBP18.1■□□□□ 0.49
DDX55-209ENST00000542286 IBTKQ9P2D0 1353 aaPredicted RBP18.1■□□□□ 0.49
DDX55-209ENST00000542286 CASC1Q6TDU7 716 aa18.1■□□□□ 0.49
DDX55-209ENST00000542286 KRT28Q7Z3Y7 464 aa18.1■□□□□ 0.49
DDX55-209ENST00000542286 RABEP1Q15276 862 aa18.09■□□□□ 0.49
DDX55-209ENST00000542286 ANO2Q9NQ90 1003 aa18.09■□□□□ 0.49
DDX55-209ENST00000542286 MRE11P49959 708 aa18.09■□□□□ 0.49
DDX55-209ENST00000542286 KCNH5Q8NCM2 988 aa18.08■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms