RNA–Protein interactions for RNA: ENST00000538838.5

TMEM260-202, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best) BASIC

Gene TMEM260, Length 1,638 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-202ENST00000538838 NFATC2IPQ8NCF5 419 aa30.69■■■□□ 2.5
TMEM260-202ENST00000538838 SPINK5Q9NQ38 1064 aaPredicted RBP30.69■■■□□ 2.5
TMEM260-202ENST00000538838 LAS1LQ9Y4W2 734 aaKnown RBP30.69■■■□□ 2.5
TMEM260-202ENST00000538838 SYTL4Q96C24 671 aaPredicted RBP30.68■■■□□ 2.5
TMEM260-202ENST00000538838 CDCA7LQ96GN5 454 aa30.68■■■□□ 2.5
TMEM260-202ENST00000538838 IL16Q14005 1332 aa30.68■■■□□ 2.5
TMEM260-202ENST00000538838 PRIM1P49642 420 aaKnown RBP30.67■■■□□ 2.5
TMEM260-202ENST00000538838 BTAF1O14981 1849 aa30.67■■■□□ 2.5
TMEM260-202ENST00000538838 TMOD3Q9NYL9 352 aa30.66■■■□□ 2.5
TMEM260-202ENST00000538838 TAF7Q15545 349 aaPredicted RBP30.65■■■□□ 2.5
TMEM260-202ENST00000538838 IFT57Q9NWB7 429 aa30.65■■■□□ 2.5
TMEM260-202ENST00000538838 FAM196AQ6ZSG2 479 aa30.65■■■□□ 2.5
TMEM260-202ENST00000538838 MIS18AQ9NYP9 233 aa30.65■■■□□ 2.5
TMEM260-202ENST00000538838 KCNQ2O43526 872 aa30.64■■■□□ 2.5
TMEM260-202ENST00000538838 ZNF853P0CG23 659 aa30.64■■■□□ 2.5
TMEM260-202ENST00000538838 CFAP44Q96MT7 982 aa30.64■■■□□ 2.5
TMEM260-202ENST00000538838 UBR2Q8IWV8 1755 aa30.63■■■□□ 2.49
TMEM260-202ENST00000538838 GNAI1P63096 354 aa30.63■■■□□ 2.49
TMEM260-202ENST00000538838 PIGBQ92521 554 aa30.62■■■□□ 2.49
TMEM260-202ENST00000538838 SLFN5Q08AF3 891 aa30.62■■■□□ 2.49
TMEM260-202ENST00000538838 TSR2Q969E8 191 aaKnown RBP30.62■■■□□ 2.49
TMEM260-202ENST00000538838 BTBD11A6QL63 1104 aa30.61■■■□□ 2.49
TMEM260-202ENST00000538838 E9PSI1 815 aa30.61■■■□□ 2.49
TMEM260-202ENST00000538838 CHL1O00533 1208 aa30.61■■■□□ 2.49
TMEM260-202ENST00000538838 PTF1AQ7RTS3 328 aa30.61■■■□□ 2.49
TMEM260-202ENST00000538838 MBIPQ9NS73 344 aa30.61■■■□□ 2.49
TMEM260-202ENST00000538838 TSPYL4Q9UJ04 414 aa30.61■■■□□ 2.49
TMEM260-202ENST00000538838 FANCIQ9NVI1 1328 aa30.59■■■□□ 2.49
TMEM260-202ENST00000538838 TNS1Q9HBL0 1735 aaKnown RBP30.59■■■□□ 2.49
TMEM260-202ENST00000538838 SLC39A6Q13433 755 aa30.58■■■□□ 2.49
TMEM260-202ENST00000538838 MYH16Q9H6N6 1097 aa30.58■■■□□ 2.49
TMEM260-202ENST00000538838 KCNQ3O43525 872 aa30.56■■■□□ 2.48
TMEM260-202ENST00000538838 BABAM1Q9NWV8 329 aa30.56■■■□□ 2.48
TMEM260-202ENST00000538838 KCPQ6ZWJ8 1503 aa30.56■■■□□ 2.48
TMEM260-202ENST00000538838 TRIM37O94972 964 aa30.55■■■□□ 2.48
TMEM260-202ENST00000538838 TRMT2AQ8IZ69 625 aaKnown RBP30.55■■■□□ 2.48
TMEM260-202ENST00000538838 ASAP1Q9ULH1 1129 aa30.55■■■□□ 2.48
TMEM260-202ENST00000538838 DUSP27Q5VZP5 1158 aa30.54■■■□□ 2.48
TMEM260-202ENST00000538838 ZNF790Q6PG37 636 aa30.54■■■□□ 2.48
TMEM260-202ENST00000538838 ATG3Q9NT62 314 aa30.53■■■□□ 2.48
TMEM260-202ENST00000538838 C5P01031 1676 aa30.53■■■□□ 2.48
TMEM260-202ENST00000538838 BCL11BQ9C0K0 894 aaPredicted RBP30.52■■■□□ 2.48
TMEM260-202ENST00000538838 TTC5Q8N0Z6 440 aa30.51■■■□□ 2.48
TMEM260-202ENST00000538838 LY75O60449 1722 aa30.5■■■□□ 2.47
TMEM260-202ENST00000538838 KRT24Q2M2I5 525 aa30.48■■■□□ 2.47
TMEM260-202ENST00000538838 EIF4A1P60842 406 aaKnown RBP30.47■■■□□ 2.47
TMEM260-202ENST00000538838 PALLDQ8WX93 1383 aa30.47■■■□□ 2.47
TMEM260-202ENST00000538838 LAMB4A4D0S4 1761 aa30.47■■■□□ 2.47
TMEM260-202ENST00000538838 EXOSC9Q06265 439 aaKnown RBP30.47■■■□□ 2.47
TMEM260-202ENST00000538838 ZNF496Q96IT1 587 aaPredicted RBP30.47■■■□□ 2.47
TMEM260-202ENST00000538838 TJP1Q07157 1748 aa30.46■■■□□ 2.47
TMEM260-202ENST00000538838 PTCD1O75127 700 aaKnown RBP30.45■■■□□ 2.47
TMEM260-202ENST00000538838 C8orf58Q8NAV2 365 aa30.44■■■□□ 2.46
TMEM260-202ENST00000538838 FMNL2Q96PY5 1086 aa30.44■■■□□ 2.46
TMEM260-202ENST00000538838 HEG1Q9ULI3 1381 aa30.43■■■□□ 2.46
TMEM260-202ENST00000538838 SMARCC1Q92922 1105 aaPredicted RBP30.43■■■□□ 2.46
TMEM260-202ENST00000538838 CICQ96RK0 1608 aaPredicted RBP30.42■■■□□ 2.46
TMEM260-202ENST00000538838 ZNF831Q5JPB2 1677 aa30.42■■■□□ 2.46
TMEM260-202ENST00000538838 TSPYL6Q8N831 410 aa30.42■■■□□ 2.46
TMEM260-202ENST00000538838 RBM42Q9BTD8 480 aaKnown RBP30.42■■■□□ 2.46
TMEM260-202ENST00000538838 RGPD3A6NKT7 1758 aaPredicted RBP30.41■■■□□ 2.46
TMEM260-202ENST00000538838 RGPD4Q7Z3J3 1758 aa30.41■■■□□ 2.46
TMEM260-202ENST00000538838 ELL2O00472 640 aaPredicted RBP30.4■■■□□ 2.46
TMEM260-202ENST00000538838 PRAMEF22A3QJZ6 481 aa30.39■■■□□ 2.46
TMEM260-202ENST00000538838 TWISTNBQ3B726 338 aaPredicted RBP30.38■■■□□ 2.45
TMEM260-202ENST00000538838 SLC4A9Q96Q91 983 aa30.38■■■□□ 2.45
TMEM260-202ENST00000538838 COL5A3P25940 1745 aaPredicted RBP30.38■■■□□ 2.45
TMEM260-202ENST00000538838 GIGYF1O75420 1035 aaPredicted RBP30.37■■■□□ 2.45
TMEM260-202ENST00000538838 APBA3O96018 575 aa30.37■■■□□ 2.45
TMEM260-202ENST00000538838 TAF1LQ8IZX4 1826 aa30.37■■■□□ 2.45
TMEM260-202ENST00000538838 LOC102724428A0A0B4J2F2 783 aa30.36■■■□□ 2.45
TMEM260-202ENST00000538838 SIK1P57059 783 aa30.36■■■□□ 2.45
TMEM260-202ENST00000538838 SNRPA1P09661 255 aaKnown RBP30.34■■■□□ 2.45
TMEM260-202ENST00000538838 ILDR2Q71H61 639 aa30.34■■■□□ 2.45
TMEM260-202ENST00000538838 VSIG10Q8N0Z9 540 aa30.33■■■□□ 2.45
TMEM260-202ENST00000538838 VAMP4O75379 141 aa30.33■■■□□ 2.45
TMEM260-202ENST00000538838 HOXB7P09629 217 aa30.32■■■□□ 2.44
TMEM260-202ENST00000538838 ATP6V1AP38606 617 aa30.31■■■□□ 2.44
TMEM260-202ENST00000538838 KCNQ4P56696 695 aa30.31■■■□□ 2.44
TMEM260-202ENST00000538838 DNAJC10Q8IXB1 793 aa30.31■■■□□ 2.44
TMEM260-202ENST00000538838 CCNL1Q9UK58 526 aaPredicted RBP30.3■■■□□ 2.44
TMEM260-202ENST00000538838 SOS1Q07889 1333 aaPredicted RBP30.3■■■□□ 2.44
TMEM260-202ENST00000538838 ITPK1Q13572 414 aa30.29■■■□□ 2.44
TMEM260-202ENST00000538838 NECTIN2Q92692 538 aa30.29■■■□□ 2.44
TMEM260-202ENST00000538838 USP16Q9Y5T5 823 aa30.29■■■□□ 2.44
TMEM260-202ENST00000538838 PLSCR1O15162 318 aa30.29■■■□□ 2.44
TMEM260-202ENST00000538838 EIF2S2P20042 333 aaKnown RBP30.29■■■□□ 2.44
TMEM260-202ENST00000538838 SF3B2Q13435 895 aaKnown RBP30.29■■■□□ 2.44
TMEM260-202ENST00000538838 CT47B1P0C2W7 299 aaPredicted RBP30.28■■■□□ 2.44
TMEM260-202ENST00000538838 HDGFL1Q5TGJ6 251 aa30.28■■■□□ 2.44
TMEM260-202ENST00000538838 RREB1Q92766 1687 aa30.27■■■□□ 2.44
TMEM260-202ENST00000538838 TCERG1O14776 1098 aaKnown RBP30.25■■■□□ 2.43
TMEM260-202ENST00000538838 MYH14Q7Z406 1995 aaKnown RBP30.25■■■□□ 2.43
TMEM260-202ENST00000538838 C4BP0C0L5 1744 aa30.25■■■□□ 2.43
TMEM260-202ENST00000538838 TXNRD1Q16881 649 aa30.25■■■□□ 2.43
TMEM260-202ENST00000538838 TEX13AQ9BXU3 409 aaPredicted RBP30.25■■■□□ 2.43
TMEM260-202ENST00000538838 LRRC4BQ9NT99 713 aa30.25■■■□□ 2.43
TMEM260-202ENST00000538838 EN1Q05925 392 aaPredicted RBP30.24■■■□□ 2.43
TMEM260-202ENST00000538838 PROM2Q8N271 834 aa30.24■■■□□ 2.43
TMEM260-202ENST00000538838 CACNA1FO60840 1977 aa30.23■■■□□ 2.43
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms