RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 THUMPD2Q9BTF0 503 aaKnown RBP27.36■■□□□ 1.97
VPS28-212ENST00000530836 IRX6P78412 446 aaPredicted RBP27.35■■□□□ 1.97
VPS28-212ENST00000530836 ZNF428Q96B54 188 aa27.35■■□□□ 1.97
VPS28-212ENST00000530836 C1orf141Q5JVX7 400 aa27.34■■□□□ 1.97
VPS28-212ENST00000530836 LAS1LQ9Y4W2 734 aaKnown RBP27.34■■□□□ 1.97
VPS28-212ENST00000530836 EXOSC9Q06265 439 aaKnown RBP27.34■■□□□ 1.97
VPS28-212ENST00000530836 ACSBG1Q96GR2 724 aa27.34■■□□□ 1.97
VPS28-212ENST00000530836 HSP90AB1P08238 724 aaKnown RBP27.33■■□□□ 1.97
VPS28-212ENST00000530836 DCTN1Q14203 1278 aa27.33■■□□□ 1.97
VPS28-212ENST00000530836 AKAP4Q5JQC9 854 aa27.33■■□□□ 1.97
VPS28-212ENST00000530836 MCM10Q7L590 875 aa27.33■■□□□ 1.97
VPS28-212ENST00000530836 BCL11BQ9C0K0 894 aaPredicted RBP27.33■■□□□ 1.97
VPS28-212ENST00000530836 KCNQ2O43526 872 aa27.32■■□□□ 1.96
VPS28-212ENST00000530836 RARSP54136 660 aaKnown RBP27.32■■□□□ 1.96
VPS28-212ENST00000530836 MBIPQ9NS73 344 aa27.31■■□□□ 1.96
VPS28-212ENST00000530836 CHL1O00533 1208 aa27.3■■□□□ 1.96
VPS28-212ENST00000530836 PTF1AQ7RTS3 328 aa27.3■■□□□ 1.96
VPS28-212ENST00000530836 DCAF5Q96JK2 942 aa27.3■■□□□ 1.96
VPS28-212ENST00000530836 PRIM1P49642 420 aaKnown RBP27.3■■□□□ 1.96
VPS28-212ENST00000530836 SF3B2Q13435 895 aaKnown RBP27.3■■□□□ 1.96
VPS28-212ENST00000530836 BABAM1Q9NWV8 329 aa27.3■■□□□ 1.96
VPS28-212ENST00000530836 PPP4R2Q9NY27 417 aa27.28■■□□□ 1.96
VPS28-212ENST00000530836 MPRIPQ6WCQ1 1025 aa27.27■■□□□ 1.96
VPS28-212ENST00000530836 SYTL4Q96C24 671 aaPredicted RBP27.27■■□□□ 1.96
VPS28-212ENST00000530836 BCAR3O75815 825 aa27.26■■□□□ 1.95
VPS28-212ENST00000530836 APBA3O96018 575 aa27.25■■□□□ 1.95
VPS28-212ENST00000530836 ALDH1L2Q3SY69 923 aa27.25■■□□□ 1.95
VPS28-212ENST00000530836 CEMIPQ8WUJ3 1361 aa27.25■■□□□ 1.95
VPS28-212ENST00000530836 ERVV-2B6SEH9 535 aa27.24■■□□□ 1.95
VPS28-212ENST00000530836 PLIN1O60240 522 aa27.23■■□□□ 1.95
VPS28-212ENST00000530836 IL17REQ8NFR9 667 aa27.23■■□□□ 1.95
VPS28-212ENST00000530836 KDM6AO15550 1401 aaPredicted RBP27.23■■□□□ 1.95
VPS28-212ENST00000530836 LGR6Q9HBX8 967 aa27.23■■□□□ 1.95
VPS28-212ENST00000530836 SBF2Q86WG5 1849 aa27.22■■□□□ 1.95
VPS28-212ENST00000530836 RNMTO43148 476 aaKnown RBP27.22■■□□□ 1.95
VPS28-212ENST00000530836 BAG6P46379 1132 aa27.22■■□□□ 1.95
VPS28-212ENST00000530836 PDE3AQ14432 1141 aa27.21■■□□□ 1.95
VPS28-212ENST00000530836 TAF7Q15545 349 aaPredicted RBP27.21■■□□□ 1.95
VPS28-212ENST00000530836 DEFB132Q7Z7B7 95 aa27.21■■□□□ 1.95
VPS28-212ENST00000530836 CANXP27824 592 aaKnown RBP27.2■■□□□ 1.95
VPS28-212ENST00000530836 TSPYL4Q9UJ04 414 aa27.2■■□□□ 1.95
VPS28-212ENST00000530836 PLSCR1O15162 318 aa27.19■■□□□ 1.94
VPS28-212ENST00000530836 VAMP4O75379 141 aa27.19■■□□□ 1.94
VPS28-212ENST00000530836 TWISTNBQ3B726 338 aaPredicted RBP27.19■■□□□ 1.94
VPS28-212ENST00000530836 PIGBQ92521 554 aa27.19■■□□□ 1.94
VPS28-212ENST00000530836 TMOD3Q9NYL9 352 aa27.19■■□□□ 1.94
VPS28-212ENST00000530836 NHSQ6T4R5 1651 aa27.19■■□□□ 1.94
VPS28-212ENST00000530836 BRPF1P55201 1214 aaPredicted RBP27.19■■□□□ 1.94
VPS28-212ENST00000530836 SMC4Q9NTJ3 1288 aa27.19■■□□□ 1.94
VPS28-212ENST00000530836 MS4A1P11836 297 aa27.18■■□□□ 1.94
VPS28-212ENST00000530836 CABP4P57796 275 aa27.18■■□□□ 1.94
VPS28-212ENST00000530836 EN1Q05925 392 aaPredicted RBP27.18■■□□□ 1.94
VPS28-212ENST00000530836 SOS1Q07889 1333 aaPredicted RBP27.17■■□□□ 1.94
VPS28-212ENST00000530836 SSH1Q8WYL5 1049 aa27.17■■□□□ 1.94
VPS28-212ENST00000530836 DOT1LQ8TEK3 1739 aa27.17■■□□□ 1.94
VPS28-212ENST00000530836 KIF16BQ96L93 1317 aa27.17■■□□□ 1.94
VPS28-212ENST00000530836 NFATC2IPQ8NCF5 419 aa27.16■■□□□ 1.94
VPS28-212ENST00000530836 CAMKK2Q96RR4 588 aa27.16■■□□□ 1.94
VPS28-212ENST00000530836 KAT6BQ8WYB5 2073 aa27.16■■□□□ 1.94
VPS28-212ENST00000530836 TNS1Q9HBL0 1735 aaKnown RBP27.16■■□□□ 1.94
VPS28-212ENST00000530836 SLC52A2Q9HAB3 445 aa27.16■■□□□ 1.94
VPS28-212ENST00000530836 TOGARAM1Q9Y4F4 1720 aa27.15■■□□□ 1.94
VPS28-212ENST00000530836 TEFQ10587 303 aa27.15■■□□□ 1.94
VPS28-212ENST00000530836 C8orf58Q8NAV2 365 aa27.15■■□□□ 1.94
VPS28-212ENST00000530836 IPO8O15397 1037 aaKnown RBP27.14■■□□□ 1.94
VPS28-212ENST00000530836 FRAT1Q92837 279 aaPredicted RBP27.14■■□□□ 1.94
VPS28-212ENST00000530836 ZKSCAN2Q63HK3 967 aa27.13■■□□□ 1.93
VPS28-212ENST00000530836 TSPYL6Q8N831 410 aa27.13■■□□□ 1.93
VPS28-212ENST00000530836 EZH2Q15910 746 aaKnown RBP27.12■■□□□ 1.93
VPS28-212ENST00000530836 EXOC6Q8TAG9 804 aa27.12■■□□□ 1.93
VPS28-212ENST00000530836 BCL2L13Q9BXK5 485 aa27.12■■□□□ 1.93
VPS28-212ENST00000530836 ADAMTS7Q9UKP4 1686 aa27.12■■□□□ 1.93
VPS28-212ENST00000530836 C20orf194Q5TEA3 1177 aa27.12■■□□□ 1.93
VPS28-212ENST00000530836 CRBNQ96SW2 442 aa27.11■■□□□ 1.93
VPS28-212ENST00000530836 PROM2Q8N271 834 aa27.1■■□□□ 1.93
VPS28-212ENST00000530836 SMARCC1Q92922 1105 aaPredicted RBP27.1■■□□□ 1.93
VPS28-212ENST00000530836 ASAP1Q9ULH1 1129 aa27.1■■□□□ 1.93
VPS28-212ENST00000530836 CHMP4AQ9BY43 222 aa27.09■■□□□ 1.93
VPS28-212ENST00000530836 ATG3Q9NT62 314 aa27.09■■□□□ 1.93
VPS28-212ENST00000530836 MIS18AQ9NYP9 233 aa27.09■■□□□ 1.93
VPS28-212ENST00000530836 ELL2O00472 640 aaPredicted RBP27.08■■□□□ 1.93
VPS28-212ENST00000530836 BTAF1O14981 1849 aa27.08■■□□□ 1.93
VPS28-212ENST00000530836 SCN11AQ9UI33 1791 aa27.08■■□□□ 1.93
VPS28-212ENST00000530836 AAMPQ13685 434 aa27.08■■□□□ 1.93
VPS28-212ENST00000530836 ARHGAP45Q92619 1136 aa27.08■■□□□ 1.93
VPS28-212ENST00000530836 MRC1P22897 1456 aa27.07■■□□□ 1.92
VPS28-212ENST00000530836 TXNRD1Q16881 649 aa27.07■■□□□ 1.92
VPS28-212ENST00000530836 ITGB4P16144 1822 aa27.07■■□□□ 1.92
VPS28-212ENST00000530836 PELP1Q8IZL8 1130 aaKnown RBP27.06■■□□□ 1.92
VPS28-212ENST00000530836 MRPL50Q8N5N7 158 aaKnown RBP27.06■■□□□ 1.92
VPS28-212ENST00000530836 PALLDQ8WX93 1383 aa27.06■■□□□ 1.92
VPS28-212ENST00000530836 BTBD11A6QL63 1104 aa27.05■■□□□ 1.92
VPS28-212ENST00000530836 ATF7IPQ6VMQ6 1270 aa27.05■■□□□ 1.92
VPS28-212ENST00000530836 CCDC136Q96JN2 1154 aa27.05■■□□□ 1.92
VPS28-212ENST00000530836 NOB1Q9ULX3 412 aaKnown RBP27.05■■□□□ 1.92
VPS28-212ENST00000530836 HOXB7P09629 217 aa27.04■■□□□ 1.92
VPS28-212ENST00000530836 FTSJ3Q8IY81 847 aaKnown RBP27.04■■□□□ 1.92
VPS28-212ENST00000530836 DZIP1LQ8IYY4 767 aaKnown RBP27.04■■□□□ 1.92
VPS28-212ENST00000530836 SLC27A3Q5K4L6 730 aa27.03■■□□□ 1.92
VPS28-212ENST00000530836 VIRMAQ69YN4 1812 aaKnown RBP27.02■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms