RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 NYAP1Q6ZVC0 841 aa5.91□□□□□ -1.46
CD44-226ENST00000527889 ZNF428Q96B54 188 aa5.91□□□□□ -1.46
CD44-226ENST00000527889 PPP1R12CQ9BZL4 782 aa5.91□□□□□ -1.46
CD44-226ENST00000527889 REREQ9P2R6 1566 aa5.91□□□□□ -1.46
CD44-226ENST00000527889 TRPM1Q7Z4N2 1603 aa5.91□□□□□ -1.46
CD44-226ENST00000527889 ATP10AO60312 1499 aa5.9□□□□□ -1.46
CD44-226ENST00000527889 ABCC3O15438 1527 aa5.9□□□□□ -1.46
CD44-226ENST00000527889 TRPM2O94759 1503 aa5.9□□□□□ -1.46
CD44-226ENST00000527889 MADDQ8WXG6 1647 aa5.9□□□□□ -1.46
CD44-226ENST00000527889 HOXA2O43364 376 aa5.9□□□□□ -1.46
CD44-226ENST00000527889 USP46P62068 366 aa5.9□□□□□ -1.46
CD44-226ENST00000527889 CTDSPL2Q05D32 466 aa5.9□□□□□ -1.46
CD44-226ENST00000527889 TJAP1Q5JTD0 557 aa5.9□□□□□ -1.46
CD44-226ENST00000527889 RDH13Q8NBN7 331 aa5.9□□□□□ -1.46
CD44-226ENST00000527889 ALG2Q9H553 416 aa5.9□□□□□ -1.46
CD44-226ENST00000527889 KANK1Q14678 1352 aa5.9□□□□□ -1.47
CD44-226ENST00000527889 PLA2R1Q13018 1463 aa5.9□□□□□ -1.47
CD44-226ENST00000527889 UGGT1Q9NYU2 1555 aa5.89□□□□□ -1.47
CD44-226ENST00000527889 CARNS1A5YM72 827 aa5.89□□□□□ -1.47
CD44-226ENST00000527889 ACTN4O43707 911 aaKnown RBP5.89□□□□□ -1.47
CD44-226ENST00000527889 ITGBL1O95965 494 aaPredicted RBP5.89□□□□□ -1.47
CD44-226ENST00000527889 FDX1P10109 184 aa5.89□□□□□ -1.47
CD44-226ENST00000527889 GCGRP47871 477 aa5.89□□□□□ -1.47
CD44-226ENST00000527889 SLC4A3P48751 1232 aa5.89□□□□□ -1.47
CD44-226ENST00000527889 VAC14Q08AM6 782 aa5.89□□□□□ -1.47
CD44-226ENST00000527889 MTRQ99707 1265 aa5.89□□□□□ -1.47
CD44-226ENST00000527889 PLA2G2EQ9NZK7 142 aa5.89□□□□□ -1.47
CD44-226ENST00000527889 PCDHGC3Q9UN70 934 aa5.89□□□□□ -1.47
CD44-226ENST00000527889 LMTK2Q8IWU2 1503 aa5.89□□□□□ -1.47
CD44-226ENST00000527889 SYNMO15061 1565 aa5.89□□□□□ -1.47
CD44-226ENST00000527889 PIK3C2BO00750 1634 aa5.88□□□□□ -1.47
CD44-226ENST00000527889 PALM3A6NDB9 673 aaPredicted RBP5.88□□□□□ -1.47
CD44-226ENST00000527889 RBM25P49756 843 aaKnown RBP5.88□□□□□ -1.47
CD44-226ENST00000527889 BLOC1S3Q6QNY0 202 aa5.88□□□□□ -1.47
CD44-226ENST00000527889 ZNF516Q92618 1163 aa5.88□□□□□ -1.47
CD44-226ENST00000527889 C3P01024 1663 aa5.88□□□□□ -1.47
CD44-226ENST00000527889 COPS2P61201 443 aa5.87□□□□□ -1.47
CD44-226ENST00000527889 GUCA2AQ02747 115 aa5.87□□□□□ -1.47
CD44-226ENST00000527889 FUT2Q10981 343 aa5.87□□□□□ -1.47
CD44-226ENST00000527889 PUS10Q3MIT2 529 aaKnown RBP5.87□□□□□ -1.47
CD44-226ENST00000527889 KMT5BQ4FZB7 885 aa5.87□□□□□ -1.47
CD44-226ENST00000527889 GGT6Q6P531 493 aa5.87□□□□□ -1.47
CD44-226ENST00000527889 LRRN4Q8WUT4 740 aa5.87□□□□□ -1.47
CD44-226ENST00000527889 HLA-CQ95604 372 aa5.87□□□□□ -1.47
CD44-226ENST00000527889 L3MBTL2Q969R5 705 aa5.87□□□□□ -1.47
CD44-226ENST00000527889 UCN2Q96RP3 112 aa5.87□□□□□ -1.47
CD44-226ENST00000527889 PCDHB3Q9Y5E6 796 aa5.87□□□□□ -1.47
CD44-226ENST00000527889 CCDC144AA2RUR9 1427 aa5.87□□□□□ -1.47
CD44-226ENST00000527889 AGLP35573 1532 aa5.87□□□□□ -1.47
CD44-226ENST00000527889 KIAA1210Q9ULL0 1709 aa5.87□□□□□ -1.47
CD44-226ENST00000527889 SETD1BQ9UPS6 1966 aaKnown RBP5.87□□□□□ -1.47
CD44-226ENST00000527889 IQGAP1P46940 1657 aa5.86□□□□□ -1.47
CD44-226ENST00000527889 TMEM88BA6NKF7 163 aa5.86□□□□□ -1.47
CD44-226ENST00000527889 LMOD1P29536 600 aaPredicted RBP5.86□□□□□ -1.47
CD44-226ENST00000527889 EPS8L1Q8TE68 723 aa5.86□□□□□ -1.47
CD44-226ENST00000527889 TFIP11Q9UBB9 837 aaKnown RBP5.86□□□□□ -1.47
CD44-226ENST00000527889 RIMS1Q86UR5 1692 aaKnown RBP5.85□□□□□ -1.47
CD44-226ENST00000527889 SETBP1Q9Y6X0 1596 aa5.85□□□□□ -1.47
CD44-226ENST00000527889 NPATQ14207 1427 aa5.85□□□□□ -1.47
CD44-226ENST00000527889 CFAP99D6REC4 459 aa5.85□□□□□ -1.47
CD44-226ENST00000527889 TLL1O43897 1013 aa5.85□□□□□ -1.47
CD44-226ENST00000527889 ATG7O95352 703 aa5.85□□□□□ -1.47
CD44-226ENST00000527889 YY1P25490 414 aa5.85□□□□□ -1.47
CD44-226ENST00000527889 SOX11P35716 441 aa5.85□□□□□ -1.47
CD44-226ENST00000527889 MTMR2Q13614 643 aa5.85□□□□□ -1.47
CD44-226ENST00000527889 HELBQ8NG08 1087 aaPredicted RBP5.85□□□□□ -1.47
CD44-226ENST00000527889 NKX2-3Q8TAU0 364 aa5.85□□□□□ -1.47
CD44-226ENST00000527889 PRR7Q8TB68 274 aa5.85□□□□□ -1.47
CD44-226ENST00000527889 PRR14Q9BWN1 585 aa5.85□□□□□ -1.47
CD44-226ENST00000527889 VRTNQ9H8Y1 702 aa5.85□□□□□ -1.47
CD44-226ENST00000527889 IL21Q9HBE4 155 aa5.85□□□□□ -1.47
CD44-226ENST00000527889 IVNS1ABPQ9Y6Y0 642 aa5.85□□□□□ -1.47
CD44-226ENST00000527889 TMEM131LA2VDJ0 1609 aa5.85□□□□□ -1.47
CD44-226ENST00000527889 LAMC1P11047 1609 aa5.85□□□□□ -1.47
CD44-226ENST00000527889 NBPF8Q3BBV2 869 aa5.84□□□□□ -1.47
CD44-226ENST00000527889 RGL3Q3MIN7 710 aa5.84□□□□□ -1.47
CD44-226ENST00000527889 ZNF326Q5BKZ1 582 aaKnown RBP5.84□□□□□ -1.47
CD44-226ENST00000527889 MORN1Q5T089 497 aa5.84□□□□□ -1.47
CD44-226ENST00000527889 HIRIP3Q9BW71 556 aaPredicted RBP5.84□□□□□ -1.47
CD44-226ENST00000527889 MAFBQ9Y5Q3 323 aaPredicted RBP5.84□□□□□ -1.47
CD44-226ENST00000527889 NEURL4Q96JN8 1562 aa5.84□□□□□ -1.48
CD44-226ENST00000527889 ADGRB3O60242 1522 aa5.84□□□□□ -1.48
CD44-226ENST00000527889 SPATA31E1Q6ZUB1 1445 aa5.83□□□□□ -1.48
CD44-226ENST00000527889 UBR1Q8IWV7 1749 aa5.83□□□□□ -1.48
CD44-226ENST00000527889 WASHC2CQ9Y4E1 1318 aa5.83□□□□□ -1.48
CD44-226ENST00000527889 KCNC4Q03721 635 aa5.83□□□□□ -1.48
CD44-226ENST00000527889 MLECQ14165 292 aa5.83□□□□□ -1.48
CD44-226ENST00000527889 CCDC27Q2M243 656 aa5.83□□□□□ -1.48
CD44-226ENST00000527889 CDCA8Q53HL2 280 aa5.83□□□□□ -1.48
CD44-226ENST00000527889 SND1Q7KZF4 910 aaKnown RBP eCLIP5.83□□□□□ -1.48
CD44-226ENST00000527889 AMOTL2Q9Y2J4 779 aa5.83□□□□□ -1.48
CD44-226ENST00000527889 RALGAPBQ86X10 1494 aa5.83□□□□□ -1.48
CD44-226ENST00000527889 UHRF1BP1Q6BDS2 1440 aa5.82□□□□□ -1.48
CD44-226ENST00000527889 E9PSI1 815 aa5.82□□□□□ -1.48
CD44-226ENST00000527889 ZPR1O75312 459 aa5.82□□□□□ -1.48
CD44-226ENST00000527889 ATP6V1AP38606 617 aa5.82□□□□□ -1.48
CD44-226ENST00000527889 SCUBE3Q8IX30 993 aa5.82□□□□□ -1.48
CD44-226ENST00000527889 TSC1Q92574 1164 aa5.82□□□□□ -1.48
CD44-226ENST00000527889 SLC27A5Q9Y2P5 690 aa5.82□□□□□ -1.48
CD44-226ENST00000527889 ARHGEF28Q8N1W1 1705 aaKnown RBP5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms