RNA–Protein interactions for RNA: ENST00000526425.1

USP35-201, Transcript of ubiquitin specific peptidase 35, humanhuman

TSL 1 (best) BASIC

Gene USP35, Length 3,770 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP35-201ENST00000526425 PNPLA6Q8IY17 1366 aa12.09□□□□□ -0.47
USP35-201ENST00000526425 FOXD4L5Q5VV16 416 aaPredicted RBP12.08□□□□□ -0.47
USP35-201ENST00000526425 CASC1Q6TDU7 716 aa12.08□□□□□ -0.47
USP35-201ENST00000526425 FOXD4L4Q8WXT5 416 aaPredicted RBP12.08□□□□□ -0.47
USP35-201ENST00000526425 EXOC6BQ9Y2D4 811 aa12.08□□□□□ -0.47
USP35-201ENST00000526425 C1orf141Q5JVX7 400 aa12.08□□□□□ -0.48
USP35-201ENST00000526425 TSHZ3Q63HK5 1081 aa12.08□□□□□ -0.48
USP35-201ENST00000526425 ZBTB40Q9NUA8 1239 aa12.08□□□□□ -0.48
USP35-201ENST00000526425 SBNO1A3KN83 1393 aa12.08□□□□□ -0.48
USP35-201ENST00000526425 KCNJ4P48050 445 aa12.08□□□□□ -0.48
USP35-201ENST00000526425 HDGFL1Q5TGJ6 251 aa12.08□□□□□ -0.48
USP35-201ENST00000526425 ZNF530Q6P9A1 599 aaPredicted RBP12.08□□□□□ -0.48
USP35-201ENST00000526425 MPRIPQ6WCQ1 1025 aa12.08□□□□□ -0.48
USP35-201ENST00000526425 C16orf71Q8IYS4 520 aaPredicted RBP12.08□□□□□ -0.48
USP35-201ENST00000526425 HOXC9P31274 260 aa12.07□□□□□ -0.48
USP35-201ENST00000526425 MEIS3Q99687 375 aa12.07□□□□□ -0.48
USP35-201ENST00000526425 CCDC9Q9Y3X0 531 aaKnown RBP12.07□□□□□ -0.48
USP35-201ENST00000526425 ERBB4Q15303 1308 aa12.07□□□□□ -0.48
USP35-201ENST00000526425 USP32Q8NFA0 1604 aa12.07□□□□□ -0.48
USP35-201ENST00000526425 SPDYE4A6NLX3 237 aa12.07□□□□□ -0.48
USP35-201ENST00000526425 HMMRO75330 724 aa12.07□□□□□ -0.48
USP35-201ENST00000526425 GCP02774 474 aa12.07□□□□□ -0.48
USP35-201ENST00000526425 G2E3Q7L622 706 aa12.07□□□□□ -0.48
USP35-201ENST00000526425 MAP7D2Q96T17 732 aa12.07□□□□□ -0.48
USP35-201ENST00000526425 NPHP3Q7Z494 1330 aa12.07□□□□□ -0.48
USP35-201ENST00000526425 DDX17Q92841 729 aaKnown RBP12.06□□□□□ -0.48
USP35-201ENST00000526425 CDK12Q9NYV4 1490 aaPredicted RBP12.06□□□□□ -0.48
USP35-201ENST00000526425 GNAT3A8MTJ3 354 aa12.06□□□□□ -0.48
USP35-201ENST00000526425 TNNT3P45378 269 aaPredicted RBP12.06□□□□□ -0.48
USP35-201ENST00000526425 PHF23Q9BUL5 403 aaPredicted RBP12.06□□□□□ -0.48
USP35-201ENST00000526425 RAPGEF4Q8WZA2 1011 aa12.04□□□□□ -0.48
USP35-201ENST00000526425 IL1RAPL2Q9NP60 686 aa12.04□□□□□ -0.48
USP35-201ENST00000526425 MAP4K4O95819 1239 aaPredicted RBP12.04□□□□□ -0.48
USP35-201ENST00000526425 ADAMTSL3P82987 1691 aa12.04□□□□□ -0.48
USP35-201ENST00000526425 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.04□□□□□ -0.48
USP35-201ENST00000526425 CCDC30Q5VVM6 783 aa12.04□□□□□ -0.48
USP35-201ENST00000526425 ZBTB7BO15156 539 aaPredicted RBP12.03□□□□□ -0.48
USP35-201ENST00000526425 FOXD4L6Q3SYB3 417 aaPredicted RBP12.03□□□□□ -0.48
USP35-201ENST00000526425 FOXD4L3Q6VB84 417 aaPredicted RBP12.03□□□□□ -0.48
USP35-201ENST00000526425 CABLES1Q8TDN4 633 aa12.03□□□□□ -0.48
USP35-201ENST00000526425 IP6K1Q92551 441 aa12.03□□□□□ -0.48
USP35-201ENST00000526425 GCC1Q96CN9 775 aa12.03□□□□□ -0.48
USP35-201ENST00000526425 TBC1D2Q9BYX2 928 aa12.03□□□□□ -0.48
USP35-201ENST00000526425 SETD1AO15047 1707 aaKnown RBP12.03□□□□□ -0.48
USP35-201ENST00000526425 KNDC1Q76NI1 1749 aa12.03□□□□□ -0.48
USP35-201ENST00000526425 FAM177BA6PVY3 158 aa12.03□□□□□ -0.48
USP35-201ENST00000526425 TSC1Q92574 1164 aa12.03□□□□□ -0.48
USP35-201ENST00000526425 OVOS2A0A0J9YW53 1432 aa12.03□□□□□ -0.48
USP35-201ENST00000526425 OVOS2Q6IE36 1432 aa12.03□□□□□ -0.48
USP35-201ENST00000526425 HDAC1Q13547 482 aaPredicted RBP12.03□□□□□ -0.48
USP35-201ENST00000526425 KDM4FA0A1W2PPD8 638 aa12.02□□□□□ -0.48
USP35-201ENST00000526425 CHRNA2Q15822 529 aa12.02□□□□□ -0.48
USP35-201ENST00000526425 PLEKHO1Q53GL0 409 aaPredicted RBP12.02□□□□□ -0.48
USP35-201ENST00000526425 OTUD7AQ8TE49 926 aaPredicted RBP12.02□□□□□ -0.48
USP35-201ENST00000526425 TEX2Q8IWB9 1127 aa12.02□□□□□ -0.49
USP35-201ENST00000526425 PRDM11Q9NQV5 511 aa12.02□□□□□ -0.49
USP35-201ENST00000526425 MYCNP04198 464 aaPredicted RBP12.02□□□□□ -0.49
USP35-201ENST00000526425 UBTFL1P0CB47 393 aaPredicted RBP12.02□□□□□ -0.49
USP35-201ENST00000526425 ANKRD24Q8TF21 1146 aa12.02□□□□□ -0.49
USP35-201ENST00000526425 GRPEL1Q9HAV7 217 aa12.02□□□□□ -0.49
USP35-201ENST00000526425 C9orf78Q9NZ63 289 aaPredicted RBP12.02□□□□□ -0.49
USP35-201ENST00000526425 ZNF335Q9H4Z2 1342 aaPredicted RBP12.02□□□□□ -0.49
USP35-201ENST00000526425 MRE11P49959 708 aa12.01□□□□□ -0.49
USP35-201ENST00000526425 NUCB1Q02818 461 aa12.01□□□□□ -0.49
USP35-201ENST00000526425 DMTNQ08495 405 aa12.01□□□□□ -0.49
USP35-201ENST00000526425 CHMP3Q9Y3E7 222 aa12.01□□□□□ -0.49
USP35-201ENST00000526425 USP31Q70CQ4 1352 aa12.01□□□□□ -0.49
USP35-201ENST00000526425 SURF6O75683 361 aaKnown RBP12.01□□□□□ -0.49
USP35-201ENST00000526425 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.01□□□□□ -0.49
USP35-201ENST00000526425 RBM42Q9BTD8 480 aaKnown RBP12.01□□□□□ -0.49
USP35-201ENST00000526425 HDAC5Q9UQL6 1122 aa12.01□□□□□ -0.49
USP35-201ENST00000526425 GNAI2P04899 355 aa12□□□□□ -0.49
USP35-201ENST00000526425 FLIIQ13045 1269 aa12□□□□□ -0.49
USP35-201ENST00000526425 TBC1D32Q96NH3 1257 aa12□□□□□ -0.49
USP35-201ENST00000526425 TAOK2Q9UL54 1235 aa12□□□□□ -0.49
USP35-201ENST00000526425 BTBD11A6QL63 1104 aa12□□□□□ -0.49
USP35-201ENST00000526425 MYL6BP14649 208 aa12□□□□□ -0.49
USP35-201ENST00000526425 TAF7Q15545 349 aaPredicted RBP12□□□□□ -0.49
USP35-201ENST00000526425 SMC5Q8IY18 1101 aa12□□□□□ -0.49
USP35-201ENST00000526425 ITSN1Q15811 1721 aa12□□□□□ -0.49
USP35-201ENST00000526425 CDC45O75419 566 aa12□□□□□ -0.49
USP35-201ENST00000526425 EVA1CP58658 441 aa12□□□□□ -0.49
USP35-201ENST00000526425 MPNDQ8N594 471 aa12□□□□□ -0.49
USP35-201ENST00000526425 ADGRB2O60241 1585 aa11.99□□□□□ -0.49
USP35-201ENST00000526425 PIP4K2AP48426 406 aaPredicted RBP11.99□□□□□ -0.49
USP35-201ENST00000526425 LGR6Q9HBX8 967 aa11.99□□□□□ -0.49
USP35-201ENST00000526425 ANO2Q9NQ90 1003 aa11.99□□□□□ -0.49
USP35-201ENST00000526425 ARHGEF10O15013 1369 aa11.99□□□□□ -0.49
USP35-201ENST00000526425 TBC1D9Q6ZT07 1266 aa11.99□□□□□ -0.49
USP35-201ENST00000526425 SLAIN2Q9P270 581 aa11.99□□□□□ -0.49
USP35-201ENST00000526425 LRRFIP2Q9Y608 721 aaKnown RBP11.99□□□□□ -0.49
USP35-201ENST00000526425 LRRC7Q96NW7 1537 aa11.99□□□□□ -0.49
USP35-201ENST00000526425 COL3A1P02461 1466 aaPredicted RBP11.99□□□□□ -0.49
USP35-201ENST00000526425 KAT6BQ8WYB5 2073 aa11.99□□□□□ -0.49
USP35-201ENST00000526425 CHL1O00533 1208 aa11.99□□□□□ -0.49
USP35-201ENST00000526425 TRAK2O60296 914 aa11.99□□□□□ -0.49
USP35-201ENST00000526425 PHAXQ9H814 394 aaKnown RBP11.99□□□□□ -0.49
USP35-201ENST00000526425 KIF20BQ96Q89 1820 aa11.98□□□□□ -0.49
USP35-201ENST00000526425 NBPF6Q5VWK0 638 aa11.98□□□□□ -0.49
USP35-201ENST00000526425 NUTM1Q86Y26 1132 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms