RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 C1orf141Q5JVX7 400 aa10.63□□□□□ -0.71
RNF4-220ENST00000513578 INTS3Q68E01 1043 aaKnown RBP10.63□□□□□ -0.71
RNF4-220ENST00000513578 COL14A1Q05707 1796 aaKnown RBP10.62□□□□□ -0.71
RNF4-220ENST00000513578 MRC1P22897 1456 aa10.62□□□□□ -0.71
RNF4-220ENST00000513578 TATP17735 454 aaPredicted RBP10.62□□□□□ -0.71
RNF4-220ENST00000513578 PIP4K2BP78356 416 aa10.62□□□□□ -0.71
RNF4-220ENST00000513578 CCDC30Q5VVM6 783 aa10.62□□□□□ -0.71
RNF4-220ENST00000513578 ITPRIPQ8IWB1 547 aa10.62□□□□□ -0.71
RNF4-220ENST00000513578 CABLES1Q8TDN4 633 aa10.62□□□□□ -0.71
RNF4-220ENST00000513578 RAPGEF4Q8WZA2 1011 aa10.62□□□□□ -0.71
RNF4-220ENST00000513578 SPG7Q9UQ90 795 aa10.62□□□□□ -0.71
RNF4-220ENST00000513578 MEGF6O75095 1541 aa10.62□□□□□ -0.71
RNF4-220ENST00000513578 HEG1Q9ULI3 1381 aa10.62□□□□□ -0.71
RNF4-220ENST00000513578 COL5A2P05997 1499 aaPredicted RBP10.61□□□□□ -0.71
RNF4-220ENST00000513578 WDR17Q8IZU2 1322 aa10.61□□□□□ -0.71
RNF4-220ENST00000513578 KRT24Q2M2I5 525 aa10.61□□□□□ -0.71
RNF4-220ENST00000513578 LGR6Q9HBX8 967 aa10.61□□□□□ -0.71
RNF4-220ENST00000513578 NLRP2Q9NX02 1062 aa10.61□□□□□ -0.71
RNF4-220ENST00000513578 MIS18AQ9NYP9 233 aa10.61□□□□□ -0.71
RNF4-220ENST00000513578 PXDNLA1KZ92 1463 aa10.61□□□□□ -0.71
RNF4-220ENST00000513578 EIF4A1P60842 406 aaKnown RBP10.6□□□□□ -0.71
RNF4-220ENST00000513578 TEFQ10587 303 aa10.6□□□□□ -0.71
RNF4-220ENST00000513578 SHANK3Q9BYB0 1731 aa10.6□□□□□ -0.71
RNF4-220ENST00000513578 TOM1O60784 492 aa10.59□□□□□ -0.71
RNF4-220ENST00000513578 SLC4A2P04920 1241 aa10.59□□□□□ -0.71
RNF4-220ENST00000513578 HSP90AB1P08238 724 aaKnown RBP10.59□□□□□ -0.71
RNF4-220ENST00000513578 PHKG2P15735 406 aa10.59□□□□□ -0.71
RNF4-220ENST00000513578 SMC5Q8IY18 1101 aa10.59□□□□□ -0.71
RNF4-220ENST00000513578 IFNL2Q8IZJ0 200 aa10.59□□□□□ -0.71
RNF4-220ENST00000513578 STK31Q9BXU1 1019 aa10.59□□□□□ -0.71
RNF4-220ENST00000513578 PRDM11Q9NQV5 511 aa10.59□□□□□ -0.71
RNF4-220ENST00000513578 PLCH1Q4KWH8 1693 aa10.59□□□□□ -0.71
RNF4-220ENST00000513578 KDM6AO15550 1401 aaPredicted RBP10.58□□□□□ -0.72
RNF4-220ENST00000513578 BTBD11A6QL63 1104 aa10.58□□□□□ -0.72
RNF4-220ENST00000513578 CSB-PGBD3P0DP91 1061 aa10.58□□□□□ -0.72
RNF4-220ENST00000513578 CHRNA2Q15822 529 aa10.58□□□□□ -0.72
RNF4-220ENST00000513578 MPRIPQ6WCQ1 1025 aa10.58□□□□□ -0.72
RNF4-220ENST00000513578 CARD10Q9BWT7 1032 aa10.58□□□□□ -0.72
RNF4-220ENST00000513578 BACH2Q9BYV9 841 aa10.58□□□□□ -0.72
RNF4-220ENST00000513578 WNK3Q9BYP7 1800 aa10.58□□□□□ -0.72
RNF4-220ENST00000513578 PHLPP1O60346 1717 aa10.58□□□□□ -0.72
RNF4-220ENST00000513578 COL16A1Q07092 1604 aaPredicted RBP10.58□□□□□ -0.72
RNF4-220ENST00000513578 DCAF8L1A6NGE4 600 aa10.57□□□□□ -0.72
RNF4-220ENST00000513578 PDE4AP27815 886 aa10.57□□□□□ -0.72
RNF4-220ENST00000513578 CCT4P50991 539 aaKnown RBP10.57□□□□□ -0.72
RNF4-220ENST00000513578 DCAF5Q96JK2 942 aa10.57□□□□□ -0.72
RNF4-220ENST00000513578 UBR2Q8IWV8 1755 aa10.57□□□□□ -0.72
RNF4-220ENST00000513578 PAPPAQ13219 1627 aa10.56□□□□□ -0.72
RNF4-220ENST00000513578 PLEKHG5O94827 1062 aa10.56□□□□□ -0.72
RNF4-220ENST00000513578 NKX1-1Q15270 411 aaPredicted RBP10.56□□□□□ -0.72
RNF4-220ENST00000513578 GCC1Q96CN9 775 aa10.56□□□□□ -0.72
RNF4-220ENST00000513578 SLC52A2Q9HAB3 445 aa10.56□□□□□ -0.72
RNF4-220ENST00000513578 LAMB4A4D0S4 1761 aa10.56□□□□□ -0.72
RNF4-220ENST00000513578 IBTKQ9P2D0 1353 aaPredicted RBP10.55□□□□□ -0.72
RNF4-220ENST00000513578 C5P01031 1676 aa10.55□□□□□ -0.72
RNF4-220ENST00000513578 FLIIQ13045 1269 aa10.55□□□□□ -0.72
RNF4-220ENST00000513578 HDGFL1Q5TGJ6 251 aa10.55□□□□□ -0.72
RNF4-220ENST00000513578 G2E3Q7L622 706 aa10.55□□□□□ -0.72
RNF4-220ENST00000513578 RPAP2Q8IXW5 612 aaPredicted RBP10.55□□□□□ -0.72
RNF4-220ENST00000513578 PDZRN3Q9UPQ7 1066 aa10.55□□□□□ -0.72
RNF4-220ENST00000513578 CYP27B1O15528 508 aa10.54□□□□□ -0.72
RNF4-220ENST00000513578 GIGYF1O75420 1035 aaPredicted RBP10.54□□□□□ -0.72
RNF4-220ENST00000513578 FAM161AQ3B820 660 aa10.54□□□□□ -0.72
RNF4-220ENST00000513578 TOM1L2Q6ZVM7 507 aa10.54□□□□□ -0.72
RNF4-220ENST00000513578 NRAPQ86VF7 1730 aa10.54□□□□□ -0.72
RNF4-220ENST00000513578 NWD2Q9ULI1 1742 aa10.54□□□□□ -0.72
RNF4-220ENST00000513578 PCDH11XQ9BZA7 1347 aa10.54□□□□□ -0.72
RNF4-220ENST00000513578 PCDH11YQ9BZA8 1340 aa10.54□□□□□ -0.72
RNF4-220ENST00000513578 ATP10DQ9P241 1426 aa10.53□□□□□ -0.72
RNF4-220ENST00000513578 IL2RBP14784 551 aa10.53□□□□□ -0.72
RNF4-220ENST00000513578 ZCRB1Q8TBF4 217 aaKnown RBP10.53□□□□□ -0.72
RNF4-220ENST00000513578 DBF4Q9UBU7 674 aaPredicted RBP10.53□□□□□ -0.72
RNF4-220ENST00000513578 LRP6O75581 1613 aa10.53□□□□□ -0.72
RNF4-220ENST00000513578 GLI3P10071 1580 aa10.52□□□□□ -0.72
RNF4-220ENST00000513578 DISP2A7MBM2 1401 aa10.52□□□□□ -0.73
RNF4-220ENST00000513578 ERVV-2B6SEH9 535 aa10.52□□□□□ -0.73
RNF4-220ENST00000513578 KCNQ3O43525 872 aa10.52□□□□□ -0.73
RNF4-220ENST00000513578 HOXD11P31277 338 aaPredicted RBP10.52□□□□□ -0.73
RNF4-220ENST00000513578 NUCB1Q02818 461 aa10.52□□□□□ -0.73
RNF4-220ENST00000513578 ZNF790Q6PG37 636 aa10.52□□□□□ -0.73
RNF4-220ENST00000513578 POTEAQ6S8J7 498 aa10.52□□□□□ -0.73
RNF4-220ENST00000513578 SIRT2Q8IXJ6 389 aa10.52□□□□□ -0.73
RNF4-220ENST00000513578 ANKRD44Q8N8A2 993 aa10.52□□□□□ -0.73
RNF4-220ENST00000513578 GNAI3P08754 354 aa10.51□□□□□ -0.73
RNF4-220ENST00000513578 KCNA4P22459 653 aa10.51□□□□□ -0.73
RNF4-220ENST00000513578 EVA1CP58658 441 aa10.51□□□□□ -0.73
RNF4-220ENST00000513578 FKBP5Q13451 457 aaPredicted RBP10.51□□□□□ -0.73
RNF4-220ENST00000513578 C8orf34Q49A92 452 aa10.51□□□□□ -0.73
RNF4-220ENST00000513578 DCTPP1Q9H773 170 aa10.51□□□□□ -0.73
RNF4-220ENST00000513578 ITGB4P16144 1822 aa10.51□□□□□ -0.73
RNF4-220ENST00000513578 TOGARAM1Q9Y4F4 1720 aa10.5□□□□□ -0.73
RNF4-220ENST00000513578 RGS3P49796 1198 aa10.5□□□□□ -0.73
RNF4-220ENST00000513578 LARP1Q6PKG0 1096 aaKnown RBP10.5□□□□□ -0.73
RNF4-220ENST00000513578 SKAP1Q86WV1 359 aa10.5□□□□□ -0.73
RNF4-220ENST00000513578 NFATC2IPQ8NCF5 419 aa10.5□□□□□ -0.73
RNF4-220ENST00000513578 DDX21Q9NR30 783 aaKnown RBP eCLIP10.5□□□□□ -0.73
RNF4-220ENST00000513578 HYPKQ9NX55 129 aa10.5□□□□□ -0.73
RNF4-220ENST00000513578 CACNB1Q02641 598 aaPredicted RBP10.49□□□□□ -0.73
RNF4-220ENST00000513578 CEP85Q6P2H3 762 aa10.49□□□□□ -0.73
RNF4-220ENST00000513578 CHD1LQ86WJ1 897 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms