RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 APBA3O96018 575 aa19.59■□□□□ 0.73
NUP54-213ENST00000513352 SIPA1L3O60292 1781 aaPredicted RBP19.58■□□□□ 0.73
NUP54-213ENST00000513352 HNRNPUQ00839 825 aaKnown RBP eCLIP19.58■□□□□ 0.72
NUP54-213ENST00000513352 LAS1LQ9Y4W2 734 aaKnown RBP19.58■□□□□ 0.72
NUP54-213ENST00000513352 CALD1Q05682 793 aaKnown RBP19.56■□□□□ 0.72
NUP54-213ENST00000513352 WWC1Q8IX03 1113 aa19.56■□□□□ 0.72
NUP54-213ENST00000513352 BTBD11A6QL63 1104 aa19.55■□□□□ 0.72
NUP54-213ENST00000513352 BAG6P46379 1132 aa19.55■□□□□ 0.72
NUP54-213ENST00000513352 SLC39A6Q13433 755 aa19.55■□□□□ 0.72
NUP54-213ENST00000513352 TAF7Q15545 349 aaPredicted RBP19.55■□□□□ 0.72
NUP54-213ENST00000513352 CCDC27Q2M243 656 aa19.55■□□□□ 0.72
NUP54-213ENST00000513352 NGEFQ8N5V2 710 aa19.55■□□□□ 0.72
NUP54-213ENST00000513352 UPF1Q92900 1129 aaKnown RBP eCLIP19.55■□□□□ 0.72
NUP54-213ENST00000513352 ASAP1Q9ULH1 1129 aa19.55■□□□□ 0.72
NUP54-213ENST00000513352 CCDC125Q86Z20 511 aa19.54■□□□□ 0.72
NUP54-213ENST00000513352 TTC5Q8N0Z6 440 aa19.54■□□□□ 0.72
NUP54-213ENST00000513352 SMARCC1Q92922 1105 aaPredicted RBP19.54■□□□□ 0.72
NUP54-213ENST00000513352 MIS18AQ9NYP9 233 aa19.54■□□□□ 0.72
NUP54-213ENST00000513352 PALLDQ8WX93 1383 aa19.54■□□□□ 0.72
NUP54-213ENST00000513352 ATG3Q9NT62 314 aa19.53■□□□□ 0.72
NUP54-213ENST00000513352 TSPYL4Q9UJ04 414 aa19.53■□□□□ 0.72
NUP54-213ENST00000513352 PAPPAQ13219 1627 aa19.52■□□□□ 0.72
NUP54-213ENST00000513352 NCBP3Q53F19 620 aaKnown RBP19.52■□□□□ 0.72
NUP54-213ENST00000513352 RBM42Q9BTD8 480 aaKnown RBP19.52■□□□□ 0.72
NUP54-213ENST00000513352 PTCD1O75127 700 aaKnown RBP19.51■□□□□ 0.71
NUP54-213ENST00000513352 EN1Q05925 392 aaPredicted RBP19.51■□□□□ 0.71
NUP54-213ENST00000513352 DEFB132Q7Z7B7 95 aa19.51■□□□□ 0.71
NUP54-213ENST00000513352 YTHDC1Q96MU7 727 aaKnown RBP19.51■□□□□ 0.71
NUP54-213ENST00000513352 KDM3BQ7LBC6 1761 aa19.5■□□□□ 0.71
NUP54-213ENST00000513352 KCNQ3O43525 872 aa19.49■□□□□ 0.71
NUP54-213ENST00000513352 GNAI1P63096 354 aa19.49■□□□□ 0.71
NUP54-213ENST00000513352 ZNF790Q6PG37 636 aa19.49■□□□□ 0.71
NUP54-213ENST00000513352 WDR63Q8IWG1 891 aa19.49■□□□□ 0.71
NUP54-213ENST00000513352 IFT57Q9NWB7 429 aa19.49■□□□□ 0.71
NUP54-213ENST00000513352 LY75O60449 1722 aa19.48■□□□□ 0.71
NUP54-213ENST00000513352 RGPD3A6NKT7 1758 aaPredicted RBP19.48■□□□□ 0.71
NUP54-213ENST00000513352 RGPD4Q7Z3J3 1758 aa19.48■□□□□ 0.71
NUP54-213ENST00000513352 UBR2Q8IWV8 1755 aa19.47■□□□□ 0.71
NUP54-213ENST00000513352 PLSCR1O15162 318 aa19.47■□□□□ 0.71
NUP54-213ENST00000513352 EZH2Q15910 746 aaKnown RBP19.47■□□□□ 0.71
NUP54-213ENST00000513352 CFAP44Q96MT7 982 aa19.47■□□□□ 0.71
NUP54-213ENST00000513352 CCNL1Q9UK58 526 aaPredicted RBP19.47■□□□□ 0.71
NUP54-213ENST00000513352 IL16Q14005 1332 aa19.47■□□□□ 0.71
NUP54-213ENST00000513352 KCPQ6ZWJ8 1503 aa19.46■□□□□ 0.71
NUP54-213ENST00000513352 LOC102724428A0A0B4J2F2 783 aa19.46■□□□□ 0.71
NUP54-213ENST00000513352 KCNQ4P56696 695 aa19.46■□□□□ 0.71
NUP54-213ENST00000513352 SIK1P57059 783 aa19.46■□□□□ 0.71
NUP54-213ENST00000513352 TXNRD1Q16881 649 aa19.46■□□□□ 0.71
NUP54-213ENST00000513352 FMNL2Q96PY5 1086 aa19.46■□□□□ 0.71
NUP54-213ENST00000513352 ZNF521Q96K83 1311 aa19.46■□□□□ 0.71
NUP54-213ENST00000513352 CHL1O00533 1208 aa19.45■□□□□ 0.7
NUP54-213ENST00000513352 GOLGA2Q08379 1002 aa19.45■□□□□ 0.7
NUP54-213ENST00000513352 TSR2Q969E8 191 aaKnown RBP19.45■□□□□ 0.7
NUP54-213ENST00000513352 ZNF496Q96IT1 587 aaPredicted RBP19.45■□□□□ 0.7
NUP54-213ENST00000513352 MBIPQ9NS73 344 aa19.45■□□□□ 0.7
NUP54-213ENST00000513352 BABAM1Q9NWV8 329 aa19.45■□□□□ 0.7
NUP54-213ENST00000513352 ATP6V1AP38606 617 aa19.44■□□□□ 0.7
NUP54-213ENST00000513352 CAMKK2Q96RR4 588 aa19.44■□□□□ 0.7
NUP54-213ENST00000513352 ZNF853P0CG23 659 aa19.43■□□□□ 0.7
NUP54-213ENST00000513352 SLC27A3Q5K4L6 730 aa19.43■□□□□ 0.7
NUP54-213ENST00000513352 MYH16Q9H6N6 1097 aa19.43■□□□□ 0.7
NUP54-213ENST00000513352 EIF4A1P60842 406 aaKnown RBP19.42■□□□□ 0.7
NUP54-213ENST00000513352 ZBED9Q6R2W3 1325 aa19.42■□□□□ 0.7
NUP54-213ENST00000513352 RREB1Q92766 1687 aa19.42■□□□□ 0.7
NUP54-213ENST00000513352 HEG1Q9ULI3 1381 aa19.42■□□□□ 0.7
NUP54-213ENST00000513352 C5P01031 1676 aa19.41■□□□□ 0.7
NUP54-213ENST00000513352 SOCS7O14512 581 aa19.41■□□□□ 0.7
NUP54-213ENST00000513352 SPINK5Q9NQ38 1064 aaPredicted RBP19.41■□□□□ 0.7
NUP54-213ENST00000513352 TJP1Q07157 1748 aa19.41■□□□□ 0.7
NUP54-213ENST00000513352 FANCIQ9NVI1 1328 aa19.41■□□□□ 0.7
NUP54-213ENST00000513352 TAF1LQ8IZX4 1826 aa19.41■□□□□ 0.7
NUP54-213ENST00000513352 NUP188Q5SRE5 1749 aa19.4■□□□□ 0.7
NUP54-213ENST00000513352 E9PSI1 815 aa19.4■□□□□ 0.7
NUP54-213ENST00000513352 PROM2Q8N271 834 aa19.4■□□□□ 0.7
NUP54-213ENST00000513352 CDCA7LQ96GN5 454 aa19.4■□□□□ 0.7
NUP54-213ENST00000513352 SLC4A9Q96Q91 983 aa19.4■□□□□ 0.7
NUP54-213ENST00000513352 LRRC4BQ9NT99 713 aa19.4■□□□□ 0.7
NUP54-213ENST00000513352 SNRPA1P09661 255 aaKnown RBP19.39■□□□□ 0.69
NUP54-213ENST00000513352 ITPK1Q13572 414 aa19.39■□□□□ 0.69
NUP54-213ENST00000513352 KRT24Q2M2I5 525 aa19.39■□□□□ 0.69
NUP54-213ENST00000513352 DNAJC10Q8IXB1 793 aa19.39■□□□□ 0.69
NUP54-213ENST00000513352 ZNF831Q5JPB2 1677 aa19.39■□□□□ 0.69
NUP54-213ENST00000513352 VSIG10Q8N0Z9 540 aa19.38■□□□□ 0.69
NUP54-213ENST00000513352 LAMB4A4D0S4 1761 aa19.37■□□□□ 0.69
NUP54-213ENST00000513352 PRAMEF22A3QJZ6 481 aa19.37■□□□□ 0.69
NUP54-213ENST00000513352 ELL2O00472 640 aaPredicted RBP19.37■□□□□ 0.69
NUP54-213ENST00000513352 SLFN5Q08AF3 891 aa19.37■□□□□ 0.69
NUP54-213ENST00000513352 LINC00116Q8NCU8 138 aa19.37■□□□□ 0.69
NUP54-213ENST00000513352 COL5A3P25940 1745 aaPredicted RBP19.37■□□□□ 0.69
NUP54-213ENST00000513352 GIGYF1O75420 1035 aaPredicted RBP19.36■□□□□ 0.69
NUP54-213ENST00000513352 STARD3NLO95772 234 aa19.36■□□□□ 0.69
NUP54-213ENST00000513352 TEX13AQ9BXU3 409 aaPredicted RBP19.36■□□□□ 0.69
NUP54-213ENST00000513352 C4BP0C0L5 1744 aa19.36■□□□□ 0.69
NUP54-213ENST00000513352 CICQ96RK0 1608 aaPredicted RBP19.36■□□□□ 0.69
NUP54-213ENST00000513352 EIF2S2P20042 333 aaKnown RBP19.35■□□□□ 0.69
NUP54-213ENST00000513352 HMGB2P26583 209 aaKnown RBP19.35■□□□□ 0.69
NUP54-213ENST00000513352 EXOSC9Q06265 439 aaKnown RBP19.35■□□□□ 0.69
NUP54-213ENST00000513352 DUSP27Q5VZP5 1158 aa19.35■□□□□ 0.69
NUP54-213ENST00000513352 NECTIN2Q92692 538 aa19.35■□□□□ 0.69
NUP54-213ENST00000513352 AK7Q96M32 723 aa19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms