RNA–Protein interactions for RNA: ENST00000503338.5

TOPBP1-202, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 3

Gene TOPBP1, Length 618 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-202ENST00000503338 SPATA31A5Q5VU36 1347 aa10.4□□□□□ -0.74
TOPBP1-202ENST00000503338 SPATA31A7Q8IWB4 1347 aa10.4□□□□□ -0.74
TOPBP1-202ENST00000503338 EXOC5O00471 708 aa10.4□□□□□ -0.74
TOPBP1-202ENST00000503338 CYP27B1O15528 508 aa10.4□□□□□ -0.74
TOPBP1-202ENST00000503338 TSPYL6Q8N831 410 aa10.4□□□□□ -0.74
TOPBP1-202ENST00000503338 C8orf58Q8NAV2 365 aa10.4□□□□□ -0.74
TOPBP1-202ENST00000503338 CHMP4BQ9H444 224 aaKnown RBP10.4□□□□□ -0.74
TOPBP1-202ENST00000503338 USP35Q9P2H5 1018 aa10.4□□□□□ -0.74
TOPBP1-202ENST00000503338 MRC1P22897 1456 aa10.4□□□□□ -0.74
TOPBP1-202ENST00000503338 PLIN1O60240 522 aa10.39□□□□□ -0.75
TOPBP1-202ENST00000503338 CABP4P57796 275 aa10.39□□□□□ -0.75
TOPBP1-202ENST00000503338 IRX6P78412 446 aaPredicted RBP10.39□□□□□ -0.75
TOPBP1-202ENST00000503338 VPS72Q15906 364 aa10.39□□□□□ -0.75
TOPBP1-202ENST00000503338 MEX3CQ5U5Q3 659 aaKnown RBP10.39□□□□□ -0.75
TOPBP1-202ENST00000503338 CCDC30Q5VVM6 783 aa10.39□□□□□ -0.75
TOPBP1-202ENST00000503338 ATF7IPQ6VMQ6 1270 aa10.39□□□□□ -0.75
TOPBP1-202ENST00000503338 FTSJ3Q8IY81 847 aaKnown RBP10.39□□□□□ -0.75
TOPBP1-202ENST00000503338 FRAT1Q92837 279 aaPredicted RBP10.39□□□□□ -0.75
TOPBP1-202ENST00000503338 C8orf37Q96NL8 207 aa10.39□□□□□ -0.75
TOPBP1-202ENST00000503338 STK31Q9BXU1 1019 aa10.39□□□□□ -0.75
TOPBP1-202ENST00000503338 NRAPQ86VF7 1730 aa10.38□□□□□ -0.75
TOPBP1-202ENST00000503338 EIF4A1P60842 406 aaKnown RBP10.38□□□□□ -0.75
TOPBP1-202ENST00000503338 DZIP1LQ8IYY4 767 aaKnown RBP10.38□□□□□ -0.75
TOPBP1-202ENST00000503338 PELP1Q8IZL8 1130 aaKnown RBP10.38□□□□□ -0.75
TOPBP1-202ENST00000503338 MRPL50Q8N5N7 158 aaKnown RBP10.38□□□□□ -0.75
TOPBP1-202ENST00000503338 BCL2L13Q9BXK5 485 aa10.38□□□□□ -0.75
TOPBP1-202ENST00000503338 API5Q9BZZ5 524 aaKnown RBP10.38□□□□□ -0.75
TOPBP1-202ENST00000503338 MIS18AQ9NYP9 233 aa10.38□□□□□ -0.75
TOPBP1-202ENST00000503338 KDM6AO15550 1401 aaPredicted RBP10.38□□□□□ -0.75
TOPBP1-202ENST00000503338 PTPRCP08575 1304 aa10.37□□□□□ -0.75
TOPBP1-202ENST00000503338 SCN11AQ9UI33 1791 aa10.37□□□□□ -0.75
TOPBP1-202ENST00000503338 ELL2O00472 640 aaPredicted RBP10.37□□□□□ -0.75
TOPBP1-202ENST00000503338 TNS2Q63HR2 1409 aa10.37□□□□□ -0.75
TOPBP1-202ENST00000503338 ZNF790Q6PG37 636 aa10.37□□□□□ -0.75
TOPBP1-202ENST00000503338 TTC5Q8N0Z6 440 aa10.37□□□□□ -0.75
TOPBP1-202ENST00000503338 DDX54Q8TDD1 881 aaKnown RBP10.37□□□□□ -0.75
TOPBP1-202ENST00000503338 CCDC9Q9Y3X0 531 aaKnown RBP10.37□□□□□ -0.75
TOPBP1-202ENST00000503338 DDB1Q16531 1140 aa10.36□□□□□ -0.75
TOPBP1-202ENST00000503338 NFATC2IPQ8NCF5 419 aa10.36□□□□□ -0.75
TOPBP1-202ENST00000503338 CRBNQ96SW2 442 aa10.36□□□□□ -0.75
TOPBP1-202ENST00000503338 USP21Q9UK80 565 aa10.36□□□□□ -0.75
TOPBP1-202ENST00000503338 NOB1Q9ULX3 412 aaKnown RBP10.36□□□□□ -0.75
TOPBP1-202ENST00000503338 HEG1Q9ULI3 1381 aa10.36□□□□□ -0.75
TOPBP1-202ENST00000503338 BCL9LQ86UU0 1499 aa10.36□□□□□ -0.75
TOPBP1-202ENST00000503338 KDM3BQ7LBC6 1761 aa10.35□□□□□ -0.75
TOPBP1-202ENST00000503338 TRIM27P14373 513 aa10.35□□□□□ -0.75
TOPBP1-202ENST00000503338 HDGFL1Q5TGJ6 251 aa10.35□□□□□ -0.75
TOPBP1-202ENST00000503338 EXOC6Q8TAG9 804 aa10.35□□□□□ -0.75
TOPBP1-202ENST00000503338 FMNL2Q96PY5 1086 aa10.35□□□□□ -0.75
TOPBP1-202ENST00000503338 DDX19BQ9UMR2 479 aa10.35□□□□□ -0.75
TOPBP1-202ENST00000503338 LRP6O75581 1613 aa10.35□□□□□ -0.75
TOPBP1-202ENST00000503338 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.35□□□□□ -0.75
TOPBP1-202ENST00000503338 SIPA1L3O60292 1781 aaPredicted RBP10.34□□□□□ -0.75
TOPBP1-202ENST00000503338 GIGYF1O75420 1035 aaPredicted RBP10.34□□□□□ -0.75
TOPBP1-202ENST00000503338 SLC4A2P04920 1241 aa10.34□□□□□ -0.75
TOPBP1-202ENST00000503338 MVPQ14764 893 aaKnown RBP10.34□□□□□ -0.75
TOPBP1-202ENST00000503338 KRT24Q2M2I5 525 aa10.34□□□□□ -0.75
TOPBP1-202ENST00000503338 C20orf194Q5TEA3 1177 aa10.34□□□□□ -0.75
TOPBP1-202ENST00000503338 CCDC136Q96JN2 1154 aa10.34□□□□□ -0.75
TOPBP1-202ENST00000503338 TMOD3Q9NYL9 352 aa10.34□□□□□ -0.75
TOPBP1-202ENST00000503338 TRPC5Q9UL62 973 aaPredicted RBP10.34□□□□□ -0.75
TOPBP1-202ENST00000503338 WNK3Q9BYP7 1800 aa10.33□□□□□ -0.76
TOPBP1-202ENST00000503338 SNRPA1P09661 255 aaKnown RBP10.33□□□□□ -0.76
TOPBP1-202ENST00000503338 DBF4Q9UBU7 674 aaPredicted RBP10.33□□□□□ -0.76
TOPBP1-202ENST00000503338 CACNA1FO60840 1977 aa10.33□□□□□ -0.76
TOPBP1-202ENST00000503338 VIRMAQ69YN4 1812 aaKnown RBP10.33□□□□□ -0.76
TOPBP1-202ENST00000503338 PANK1Q8TE04 598 aa10.32□□□□□ -0.76
TOPBP1-202ENST00000503338 COG6Q9Y2V7 657 aa10.32□□□□□ -0.76
TOPBP1-202ENST00000503338 SHANK3Q9BYB0 1731 aa10.32□□□□□ -0.76
TOPBP1-202ENST00000503338 ABCC4O15439 1325 aa10.32□□□□□ -0.76
TOPBP1-202ENST00000503338 AFF2P51816 1311 aa10.32□□□□□ -0.76
TOPBP1-202ENST00000503338 ERBB4Q15303 1308 aa10.32□□□□□ -0.76
TOPBP1-202ENST00000503338 KCNQ3O43525 872 aa10.31□□□□□ -0.76
TOPBP1-202ENST00000503338 ITPRIPQ8IWB1 547 aa10.31□□□□□ -0.76
TOPBP1-202ENST00000503338 VSIG10Q8N0Z9 540 aa10.31□□□□□ -0.76
TOPBP1-202ENST00000503338 CLUAP1Q96AJ1 413 aa10.31□□□□□ -0.76
TOPBP1-202ENST00000503338 GJD4Q96KN9 370 aaPredicted RBP10.31□□□□□ -0.76
TOPBP1-202ENST00000503338 TEX13AQ9BXU3 409 aaPredicted RBP10.31□□□□□ -0.76
TOPBP1-202ENST00000503338 HYPKQ9NX55 129 aa10.31□□□□□ -0.76
TOPBP1-202ENST00000503338 RLBP1P12271 317 aa10.3□□□□□ -0.76
TOPBP1-202ENST00000503338 EIF2S2P20042 333 aaKnown RBP10.3□□□□□ -0.76
TOPBP1-202ENST00000503338 FLIIQ13045 1269 aa10.3□□□□□ -0.76
TOPBP1-202ENST00000503338 SLC39A6Q13433 755 aa10.3□□□□□ -0.76
TOPBP1-202ENST00000503338 FAM98CQ17RN3 349 aaKnown RBP10.3□□□□□ -0.76
TOPBP1-202ENST00000503338 ZNF496Q96IT1 587 aaPredicted RBP10.3□□□□□ -0.76
TOPBP1-202ENST00000503338 ATRNO75882 1429 aa10.3□□□□□ -0.76
TOPBP1-202ENST00000503338 TCERG1O14776 1098 aaKnown RBP10.29□□□□□ -0.76
TOPBP1-202ENST00000503338 ONECUT3O60422 494 aaPredicted RBP10.29□□□□□ -0.76
TOPBP1-202ENST00000503338 DDX58O95786 925 aaKnown RBP10.29□□□□□ -0.76
TOPBP1-202ENST00000503338 CCT4P50991 539 aaKnown RBP10.29□□□□□ -0.76
TOPBP1-202ENST00000503338 FKBP5Q13451 457 aaPredicted RBP10.29□□□□□ -0.76
TOPBP1-202ENST00000503338 ZNF772Q68DY9 489 aaPredicted RBP10.29□□□□□ -0.76
TOPBP1-202ENST00000503338 INTS3Q68E01 1043 aaKnown RBP10.29□□□□□ -0.76
TOPBP1-202ENST00000503338 TMEM57Q8N5G2 664 aa10.29□□□□□ -0.76
TOPBP1-202ENST00000503338 DDX21Q9NR30 783 aaKnown RBP eCLIP10.29□□□□□ -0.76
TOPBP1-202ENST00000503338 BCL9O00512 1426 aa10.29□□□□□ -0.76
TOPBP1-202ENST00000503338 B4GALNT3Q6L9W6 998 aa10.28□□□□□ -0.76
TOPBP1-202ENST00000503338 FBXO41Q8TF61 875 aa10.28□□□□□ -0.76
TOPBP1-202ENST00000503338 PIGBQ92521 554 aa10.28□□□□□ -0.76
TOPBP1-202ENST00000503338 SMARCC1Q92922 1105 aaPredicted RBP10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms