RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 HTATSF1O43719 755 aaKnown RBP9.93□□□□□ -0.82
USP4-211ENST00000485450 IL2RBP14784 551 aa9.93□□□□□ -0.82
USP4-211ENST00000485450 PCDH11XQ9BZA7 1347 aa9.93□□□□□ -0.82
USP4-211ENST00000485450 PCDH11YQ9BZA8 1340 aa9.93□□□□□ -0.82
USP4-211ENST00000485450 ADAMTS2O95450 1211 aa9.93□□□□□ -0.82
USP4-211ENST00000485450 CHRNA2Q15822 529 aa9.93□□□□□ -0.82
USP4-211ENST00000485450 NUTM2GQ5VZR2 741 aa9.93□□□□□ -0.82
USP4-211ENST00000485450 IPO4Q8TEX9 1081 aaKnown RBP9.93□□□□□ -0.82
USP4-211ENST00000485450 RNF123Q5XPI4 1314 aa9.92□□□□□ -0.82
USP4-211ENST00000485450 MTHFSP49914 203 aa9.92□□□□□ -0.82
USP4-211ENST00000485450 MEX3CQ5U5Q3 659 aaKnown RBP9.92□□□□□ -0.82
USP4-211ENST00000485450 EP400Q96L91 3159 aa9.92□□□□□ -0.82
USP4-211ENST00000485450 IBTKQ9P2D0 1353 aaPredicted RBP9.91□□□□□ -0.82
USP4-211ENST00000485450 NUTM2BA6NNL0 878 aaPredicted RBP9.91□□□□□ -0.82
USP4-211ENST00000485450 NUTM2EB1AL46 878 aaPredicted RBP9.91□□□□□ -0.82
USP4-211ENST00000485450 FCHSD2O94868 740 aa9.91□□□□□ -0.82
USP4-211ENST00000485450 NUTM2AQ8IVF1 878 aaPredicted RBP9.91□□□□□ -0.82
USP4-211ENST00000485450 SEPT12Q8IYM1 358 aa9.91□□□□□ -0.82
USP4-211ENST00000485450 MARCH10Q8NA82 808 aaPredicted RBP9.91□□□□□ -0.82
USP4-211ENST00000485450 BRCA1P38398 1863 aaKnown RBP9.91□□□□□ -0.82
USP4-211ENST00000485450 AMOTQ4VCS5 1084 aa9.91□□□□□ -0.82
USP4-211ENST00000485450 PLSCR1O15162 318 aa9.9□□□□□ -0.82
USP4-211ENST00000485450 CHMP4AQ9BY43 222 aa9.9□□□□□ -0.82
USP4-211ENST00000485450 TMEM132AQ24JP5 1023 aa9.9□□□□□ -0.83
USP4-211ENST00000485450 BABAM1Q9NWV8 329 aa9.9□□□□□ -0.83
USP4-211ENST00000485450 MYH14Q7Z406 1995 aaKnown RBP9.89□□□□□ -0.83
USP4-211ENST00000485450 CCDC27Q2M243 656 aa9.89□□□□□ -0.83
USP4-211ENST00000485450 SOCS7O14512 581 aa9.89□□□□□ -0.83
USP4-211ENST00000485450 FBLN1P23142 703 aa9.89□□□□□ -0.83
USP4-211ENST00000485450 NFKBIBQ15653 356 aa9.89□□□□□ -0.83
USP4-211ENST00000485450 DIAPH1O60610 1272 aaKnown RBP9.89□□□□□ -0.83
USP4-211ENST00000485450 HSP90AA1P07900 732 aaKnown RBP9.89□□□□□ -0.83
USP4-211ENST00000485450 PHKG2P15735 406 aa9.89□□□□□ -0.83
USP4-211ENST00000485450 CYP27B1O15528 508 aa9.88□□□□□ -0.83
USP4-211ENST00000485450 AMPHP49418 695 aa9.88□□□□□ -0.83
USP4-211ENST00000485450 KRT27Q7Z3Y8 459 aa9.88□□□□□ -0.83
USP4-211ENST00000485450 UPF1Q92900 1129 aaKnown RBP eCLIP9.88□□□□□ -0.83
USP4-211ENST00000485450 ZNF521Q96K83 1311 aa9.88□□□□□ -0.83
USP4-211ENST00000485450 MAP3K5Q99683 1374 aa9.88□□□□□ -0.83
USP4-211ENST00000485450 ERVV-2B6SEH9 535 aa9.88□□□□□ -0.83
USP4-211ENST00000485450 TCERG1O14776 1098 aaKnown RBP9.88□□□□□ -0.83
USP4-211ENST00000485450 SAMD1Q6SPF0 538 aaPredicted RBP9.88□□□□□ -0.83
USP4-211ENST00000485450 FAM196AQ6ZSG2 479 aa9.88□□□□□ -0.83
USP4-211ENST00000485450 CHRM1P11229 460 aaPredicted RBP9.87□□□□□ -0.83
USP4-211ENST00000485450 PNISRQ8TF01 805 aaKnown RBP9.87□□□□□ -0.83
USP4-211ENST00000485450 RGL2O15211 777 aa9.86□□□□□ -0.83
USP4-211ENST00000485450 AKAP4Q5JQC9 854 aa9.86□□□□□ -0.83
USP4-211ENST00000485450 NGEFQ8N5V2 710 aa9.86□□□□□ -0.83
USP4-211ENST00000485450 CAMKK2Q96RR4 588 aa9.86□□□□□ -0.83
USP4-211ENST00000485450 DDRGK1Q96HY6 314 aa9.86□□□□□ -0.83
USP4-211ENST00000485450 ZNF830Q96NB3 372 aaPredicted RBP9.86□□□□□ -0.83
USP4-211ENST00000485450 BACH2Q9BYV9 841 aa9.86□□□□□ -0.83
USP4-211ENST00000485450 PDE4AP27815 886 aa9.86□□□□□ -0.83
USP4-211ENST00000485450 TOM1L2Q6ZVM7 507 aa9.85□□□□□ -0.83
USP4-211ENST00000485450 ZCRB1Q8TBF4 217 aaKnown RBP9.85□□□□□ -0.83
USP4-211ENST00000485450 MS4A1P11836 297 aa9.85□□□□□ -0.83
USP4-211ENST00000485450 FAM98CQ17RN3 349 aaKnown RBP9.85□□□□□ -0.83
USP4-211ENST00000485450 ZFP91Q96JP5 570 aaPredicted RBP9.85□□□□□ -0.83
USP4-211ENST00000485450 TMEM51Q9NW97 253 aa9.85□□□□□ -0.83
USP4-211ENST00000485450 ZBTB22O15209 634 aa9.85□□□□□ -0.83
USP4-211ENST00000485450 CC2D1BQ5T0F9 858 aaKnown RBP9.84□□□□□ -0.83
USP4-211ENST00000485450 DDB1Q16531 1140 aa9.84□□□□□ -0.83
USP4-211ENST00000485450 CCDC184Q52MB2 194 aa9.84□□□□□ -0.83
USP4-211ENST00000485450 DCAF5Q96JK2 942 aa9.84□□□□□ -0.83
USP4-211ENST00000485450 SPG7Q9UQ90 795 aa9.84□□□□□ -0.83
USP4-211ENST00000485450 HSP90AB1P08238 724 aaKnown RBP9.83□□□□□ -0.84
USP4-211ENST00000485450 BRD2P25440 801 aaKnown RBP9.83□□□□□ -0.84
USP4-211ENST00000485450 TATP17735 454 aaPredicted RBP9.83□□□□□ -0.84
USP4-211ENST00000485450 ZNF853P0CG23 659 aa9.83□□□□□ -0.84
USP4-211ENST00000485450 EVA1CP58658 441 aa9.83□□□□□ -0.84
USP4-211ENST00000485450 CFAP53Q96M91 514 aa9.83□□□□□ -0.84
USP4-211ENST00000485450 NAP1L5Q96NT1 182 aaPredicted RBP9.83□□□□□ -0.84
USP4-211ENST00000485450 AFDNP55196 1824 aaKnown RBP9.83□□□□□ -0.84
USP4-211ENST00000485450 IL16Q14005 1332 aa9.83□□□□□ -0.84
USP4-211ENST00000485450 LRRC37AA6NMS7 1700 aa9.82□□□□□ -0.84
USP4-211ENST00000485450 SOS1Q07889 1333 aaPredicted RBP9.82□□□□□ -0.84
USP4-211ENST00000485450 LMOD2Q6P5Q4 547 aa9.82□□□□□ -0.84
USP4-211ENST00000485450 AEBP1Q8IUX7 1158 aa9.82□□□□□ -0.84
USP4-211ENST00000485450 EXOC5O00471 708 aa9.82□□□□□ -0.84
USP4-211ENST00000485450 IFNL2Q8IZJ0 200 aa9.82□□□□□ -0.84
USP4-211ENST00000485450 PNNQ9H307 717 aaKnown RBP9.82□□□□□ -0.84
USP4-211ENST00000485450 HMGB2P26583 209 aaKnown RBP9.81□□□□□ -0.84
USP4-211ENST00000485450 SLC27A3Q5K4L6 730 aa9.81□□□□□ -0.84
USP4-211ENST00000485450 NUDCQ9Y266 331 aa9.81□□□□□ -0.84
USP4-211ENST00000485450 NUP98P52948 1817 aa9.81□□□□□ -0.84
USP4-211ENST00000485450 A0A1B0GUL6 1792 aa9.81□□□□□ -0.84
USP4-211ENST00000485450 MTHFSDQ2M296 383 aaKnown RBP9.81□□□□□ -0.84
USP4-211ENST00000485450 PLEKHO1Q53GL0 409 aaPredicted RBP9.81□□□□□ -0.84
USP4-211ENST00000485450 PDCL3Q9H2J4 239 aa9.81□□□□□ -0.84
USP4-211ENST00000485450 RIC1Q4ADV7 1423 aa9.81□□□□□ -0.84
USP4-211ENST00000485450 CLCN1P35523 988 aa9.81□□□□□ -0.84
USP4-211ENST00000485450 GAS2L2Q8NHY3 880 aa9.81□□□□□ -0.84
USP4-211ENST00000485450 FAM9BQ8IZU0 186 aa9.8□□□□□ -0.84
USP4-211ENST00000485450 DDX60Q8IY21 1712 aaKnown RBP9.8□□□□□ -0.84
USP4-211ENST00000485450 ARFGEF1Q9Y6D6 1849 aa9.8□□□□□ -0.84
USP4-211ENST00000485450 AKT1S1Q96B36 256 aa9.8□□□□□ -0.84
USP4-211ENST00000485450 STRN4Q9NRL3 753 aa9.8□□□□□ -0.84
USP4-211ENST00000485450 RNMTO43148 476 aaKnown RBP9.79□□□□□ -0.84
USP4-211ENST00000485450 PROM2Q8N271 834 aa9.79□□□□□ -0.84
USP4-211ENST00000485450 SECISBP2LQ93073 1101 aaKnown RBP9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 157.7 ms