RNA–Protein interactions for RNA: ENST00000481019.5

PTPRF-213, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 459 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-213ENST00000481019 IL17REQ8NFR9 667 aa16.33■□□□□ 0.2
PTPRF-213ENST00000481019 PLEKHF1Q96S99 279 aa16.33■□□□□ 0.2
PTPRF-213ENST00000481019 MAP3K5Q99683 1374 aa16.33■□□□□ 0.2
PTPRF-213ENST00000481019 MRC1P22897 1456 aa16.33■□□□□ 0.2
PTPRF-213ENST00000481019 C5P01031 1676 aa16.33■□□□□ 0.2
PTPRF-213ENST00000481019 STK32BQ9NY57 414 aa16.32■□□□□ 0.2
PTPRF-213ENST00000481019 ITPK1Q13572 414 aa16.31■□□□□ 0.2
PTPRF-213ENST00000481019 SMIM5Q71RC9 77 aa16.31■□□□□ 0.2
PTPRF-213ENST00000481019 AMIGO3Q86WK7 504 aa16.31■□□□□ 0.2
PTPRF-213ENST00000481019 GAS2L2Q8NHY3 880 aa16.31■□□□□ 0.2
PTPRF-213ENST00000481019 SMARCC1Q92922 1105 aaPredicted RBP16.31■□□□□ 0.2
PTPRF-213ENST00000481019 SLC52A2Q9HAB3 445 aa16.31■□□□□ 0.2
PTPRF-213ENST00000481019 LOC102724428A0A0B4J2F2 783 aa16.3■□□□□ 0.2
PTPRF-213ENST00000481019 SIK1P57059 783 aa16.3■□□□□ 0.2
PTPRF-213ENST00000481019 LINC00116Q8NCU8 138 aa16.3■□□□□ 0.2
PTPRF-213ENST00000481019 SIPA1L3O60292 1781 aaPredicted RBP16.3■□□□□ 0.2
PTPRF-213ENST00000481019 GNAT3A8MTJ3 354 aa16.29■□□□□ 0.2
PTPRF-213ENST00000481019 SLC39A6Q13433 755 aa16.29■□□□□ 0.2
PTPRF-213ENST00000481019 C4BP0C0L5 1744 aa16.28■□□□□ 0.2
PTPRF-213ENST00000481019 PNPLA7Q6ZV29 1317 aa16.28■□□□□ 0.2
PTPRF-213ENST00000481019 DLG5Q8TDM6 1919 aa16.28■□□□□ 0.2
PTPRF-213ENST00000481019 DCTN1Q14203 1278 aa16.28■□□□□ 0.2
PTPRF-213ENST00000481019 CEMIPQ8WUJ3 1361 aa16.27■□□□□ 0.2
PTPRF-213ENST00000481019 LRP5O75197 1615 aa16.27■□□□□ 0.2
PTPRF-213ENST00000481019 MCM10Q7L590 875 aa16.27■□□□□ 0.2
PTPRF-213ENST00000481019 RBM42Q9BTD8 480 aaKnown RBP16.27■□□□□ 0.2
PTPRF-213ENST00000481019 KCPQ6ZWJ8 1503 aa16.27■□□□□ 0.2
PTPRF-213ENST00000481019 QSER1Q2KHR3 1735 aa16.27■□□□□ 0.19
PTPRF-213ENST00000481019 TJP1Q07157 1748 aa16.26■□□□□ 0.19
PTPRF-213ENST00000481019 PTCD1O75127 700 aaKnown RBP16.26■□□□□ 0.19
PTPRF-213ENST00000481019 ZBTB7AO95365 584 aa16.26■□□□□ 0.19
PTPRF-213ENST00000481019 ATP6V1AP38606 617 aa16.26■□□□□ 0.19
PTPRF-213ENST00000481019 CCDC146Q8IYE0 955 aa16.26■□□□□ 0.19
PTPRF-213ENST00000481019 ADAMTS8Q9UP79 889 aa16.26■□□□□ 0.19
PTPRF-213ENST00000481019 COL5A3P25940 1745 aaPredicted RBP16.25■□□□□ 0.19
PTPRF-213ENST00000481019 ZNF831Q5JPB2 1677 aa16.25■□□□□ 0.19
PTPRF-213ENST00000481019 TFCP2L1Q9NZI6 479 aa16.25■□□□□ 0.19
PTPRF-213ENST00000481019 UBR2Q8IWV8 1755 aa16.24■□□□□ 0.19
PTPRF-213ENST00000481019 KCNQ3O43525 872 aa16.24■□□□□ 0.19
PTPRF-213ENST00000481019 NFE2L2Q16236 605 aa16.24■□□□□ 0.19
PTPRF-213ENST00000481019 UBR3Q6ZT12 1888 aa16.24■□□□□ 0.19
PTPRF-213ENST00000481019 COL23A1Q86Y22 540 aaPredicted RBP16.23■□□□□ 0.19
PTPRF-213ENST00000481019 THUMPD2Q9BTF0 503 aaKnown RBP16.23■□□□□ 0.19
PTPRF-213ENST00000481019 ATF5Q9Y2D1 282 aaPredicted RBP16.23■□□□□ 0.19
PTPRF-213ENST00000481019 MYH14Q7Z406 1995 aaKnown RBP16.22■□□□□ 0.19
PTPRF-213ENST00000481019 CICQ96RK0 1608 aaPredicted RBP16.21■□□□□ 0.19
PTPRF-213ENST00000481019 PTGER2P43116 358 aa16.21■□□□□ 0.19
PTPRF-213ENST00000481019 TEFQ10587 303 aa16.21■□□□□ 0.19
PTPRF-213ENST00000481019 RRP7AQ9Y3A4 280 aaKnown RBP16.21■□□□□ 0.19
PTPRF-213ENST00000481019 ANP32CO43423 234 aa16.2■□□□□ 0.18
PTPRF-213ENST00000481019 WDR43Q15061 677 aaKnown RBP eCLIP16.2■□□□□ 0.18
PTPRF-213ENST00000481019 DNAJC10Q8IXB1 793 aa16.2■□□□□ 0.18
PTPRF-213ENST00000481019 AK7Q96M32 723 aa16.2■□□□□ 0.18
PTPRF-213ENST00000481019 SGIP1Q9BQI5 828 aa16.2■□□□□ 0.18
PTPRF-213ENST00000481019 MAPK8IP3Q9UPT6 1336 aa16.19■□□□□ 0.18
PTPRF-213ENST00000481019 HTATSF1O43719 755 aaKnown RBP16.19■□□□□ 0.18
PTPRF-213ENST00000481019 PHF14O94880 888 aa16.19■□□□□ 0.18
PTPRF-213ENST00000481019 TMPOP42166 694 aaKnown RBP16.19■□□□□ 0.18
PTPRF-213ENST00000481019 RTF1Q92541 710 aaKnown RBP16.19■□□□□ 0.18
PTPRF-213ENST00000481019 ZNF496Q96IT1 587 aaPredicted RBP16.19■□□□□ 0.18
PTPRF-213ENST00000481019 SPON1Q9HCB6 807 aa16.19■□□□□ 0.18
PTPRF-213ENST00000481019 MIS18AQ9NYP9 233 aa16.19■□□□□ 0.18
PTPRF-213ENST00000481019 BTBD11A6QL63 1104 aa16.18■□□□□ 0.18
PTPRF-213ENST00000481019 GNPATO15228 680 aa16.18■□□□□ 0.18
PTPRF-213ENST00000481019 ZNF790Q6PG37 636 aa16.18■□□□□ 0.18
PTPRF-213ENST00000481019 COL24A1Q17RW2 1714 aa16.18■□□□□ 0.18
PTPRF-213ENST00000481019 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.17■□□□□ 0.18
PTPRF-213ENST00000481019 MSH5O43196 834 aa16.17■□□□□ 0.18
PTPRF-213ENST00000481019 CRKLP46109 303 aaKnown RBP16.17■□□□□ 0.18
PTPRF-213ENST00000481019 RIPK4P57078 832 aa16.17■□□□□ 0.18
PTPRF-213ENST00000481019 INTS5Q6P9B9 1019 aaKnown RBP16.17■□□□□ 0.18
PTPRF-213ENST00000481019 RUNDC1Q96C34 613 aa16.17■□□□□ 0.18
PTPRF-213ENST00000481019 MTFR1LQ9H019 292 aa16.17■□□□□ 0.18
PTPRF-213ENST00000481019 PNNQ9H307 717 aaKnown RBP16.17■□□□□ 0.18
PTPRF-213ENST00000481019 CNTNAP4Q9C0A0 1308 aa16.17■□□□□ 0.18
PTPRF-213ENST00000481019 SENP3-EIF4A1A0A087X0R7 540 aa16.16■□□□□ 0.18
PTPRF-213ENST00000481019 PRAMEF22A3QJZ6 481 aa16.16■□□□□ 0.18
PTPRF-213ENST00000481019 NEFMP07197 916 aa16.16■□□□□ 0.18
PTPRF-213ENST00000481019 CYP19A1P11511 503 aaPredicted RBP16.16■□□□□ 0.18
PTPRF-213ENST00000481019 NEUROD2Q15784 382 aa16.16■□□□□ 0.18
PTPRF-213ENST00000481019 RC3H1Q5TC82 1133 aaKnown RBP16.16■□□□□ 0.18
PTPRF-213ENST00000481019 MSL1Q68DK7 614 aa16.16■□□□□ 0.18
PTPRF-213ENST00000481019 PNISRQ8TF01 805 aaKnown RBP16.16■□□□□ 0.18
PTPRF-213ENST00000481019 MRS2Q9HD23 443 aa16.15■□□□□ 0.18
PTPRF-213ENST00000481019 TRIM35Q9UPQ4 493 aa16.15■□□□□ 0.18
PTPRF-213ENST00000481019 KDM3BQ7LBC6 1761 aa16.15■□□□□ 0.18
PTPRF-213ENST00000481019 HEG1Q9ULI3 1381 aa16.14■□□□□ 0.17
PTPRF-213ENST00000481019 TAF7Q15545 349 aaPredicted RBP16.14■□□□□ 0.17
PTPRF-213ENST00000481019 TTC5Q8N0Z6 440 aa16.14■□□□□ 0.17
PTPRF-213ENST00000481019 C4AP0C0L4 1744 aa16.14■□□□□ 0.17
PTPRF-213ENST00000481019 RPS6KA4O75676 772 aa16.13■□□□□ 0.17
PTPRF-213ENST00000481019 SSFA2P28290 1259 aa16.13■□□□□ 0.17
PTPRF-213ENST00000481019 VSIG10Q8N0Z9 540 aa16.13■□□□□ 0.17
PTPRF-213ENST00000481019 APAF1O14727 1248 aa16.12■□□□□ 0.17
PTPRF-213ENST00000481019 SLC16A10Q8TF71 515 aa16.12■□□□□ 0.17
PTPRF-213ENST00000481019 ARHGEF1Q92888 912 aaKnown RBP16.12■□□□□ 0.17
PTPRF-213ENST00000481019 FMNL2Q96PY5 1086 aa16.12■□□□□ 0.17
PTPRF-213ENST00000481019 CCDC87Q9NVE4 849 aa16.12■□□□□ 0.17
PTPRF-213ENST00000481019 ZBTB1Q9Y2K1 713 aa16.12■□□□□ 0.17
PTPRF-213ENST00000481019 RTCBQ9Y3I0 505 aaKnown RBP16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms