RNA–Protein interactions for RNA: ENST00000470026.5

BRCA1-209, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 2,108 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-209ENST00000470026 CLCN1P35523 988 aa16.79■□□□□ 0.28
BRCA1-209ENST00000470026 ARXQ96QS3 562 aa16.79■□□□□ 0.28
BRCA1-209ENST00000470026 ST18O60284 1047 aa16.78■□□□□ 0.28
BRCA1-209ENST00000470026 AMPHP49418 695 aa16.78■□□□□ 0.28
BRCA1-209ENST00000470026 FLIIQ13045 1269 aa16.78■□□□□ 0.28
BRCA1-209ENST00000470026 CCDC30Q5VVM6 783 aa16.78■□□□□ 0.28
BRCA1-209ENST00000470026 IL17RAQ96F46 866 aa16.78■□□□□ 0.28
BRCA1-209ENST00000470026 STK31Q9BXU1 1019 aa16.78■□□□□ 0.28
BRCA1-209ENST00000470026 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.78■□□□□ 0.28
BRCA1-209ENST00000470026 SOX12O15370 315 aa16.77■□□□□ 0.28
BRCA1-209ENST00000470026 GNAI3P08754 354 aa16.77■□□□□ 0.28
BRCA1-209ENST00000470026 SLC4A10Q6U841 1118 aa16.77■□□□□ 0.28
BRCA1-209ENST00000470026 GNAT3A8MTJ3 354 aa16.76■□□□□ 0.27
BRCA1-209ENST00000470026 ATP8B2P98198 1209 aa16.76■□□□□ 0.27
BRCA1-209ENST00000470026 NGDNQ8NEJ9 315 aaKnown RBP16.76■□□□□ 0.27
BRCA1-209ENST00000470026 AK9Q5TCS8 1911 aa16.76■□□□□ 0.27
BRCA1-209ENST00000470026 APBB1O00213 710 aa16.76■□□□□ 0.27
BRCA1-209ENST00000470026 HOXC9P31274 260 aa16.76■□□□□ 0.27
BRCA1-209ENST00000470026 STAP2Q9UGK3 403 aa16.76■□□□□ 0.27
BRCA1-209ENST00000470026 MAP3K5Q99683 1374 aa16.75■□□□□ 0.27
BRCA1-209ENST00000470026 ZNF445P59923 1031 aa16.74■□□□□ 0.27
BRCA1-209ENST00000470026 IL17REQ8NFR9 667 aa16.74■□□□□ 0.27
BRCA1-209ENST00000470026 LRRCC1Q9C099 1032 aa16.74■□□□□ 0.27
BRCA1-209ENST00000470026 LMBRD1Q9NUN5 540 aa16.74■□□□□ 0.27
BRCA1-209ENST00000470026 ESYT1Q9BSJ8 1104 aa16.73■□□□□ 0.27
BRCA1-209ENST00000470026 EXOC6BQ9Y2D4 811 aa16.73■□□□□ 0.27
BRCA1-209ENST00000470026 AOX1Q06278 1338 aa16.73■□□□□ 0.27
BRCA1-209ENST00000470026 PNMA6EA0A0J9YXQ4 647 aa16.73■□□□□ 0.27
BRCA1-209ENST00000470026 MED1Q15648 1581 aaPredicted RBP16.73■□□□□ 0.27
BRCA1-209ENST00000470026 ZDHHC9Q9Y397 364 aa16.73■□□□□ 0.27
BRCA1-209ENST00000470026 DDX49Q9Y6V7 483 aaKnown RBP16.73■□□□□ 0.27
BRCA1-209ENST00000470026 MX1P20591 662 aa16.72■□□□□ 0.27
BRCA1-209ENST00000470026 CEBPAP49715 358 aaPredicted RBP16.72■□□□□ 0.27
BRCA1-209ENST00000470026 NLRP6P59044 892 aa16.72■□□□□ 0.27
BRCA1-209ENST00000470026 FKBP5Q13451 457 aaPredicted RBP16.72■□□□□ 0.27
BRCA1-209ENST00000470026 PKP1Q13835 747 aa16.72■□□□□ 0.27
BRCA1-209ENST00000470026 ZGPATQ8N5A5 531 aaKnown RBP16.72■□□□□ 0.27
BRCA1-209ENST00000470026 SRCIN1Q9C0H9 1055 aa16.72■□□□□ 0.27
BRCA1-209ENST00000470026 EPB41L2O43491 1005 aaKnown RBP16.72■□□□□ 0.27
BRCA1-209ENST00000470026 MCM2P49736 904 aa16.72■□□□□ 0.27
BRCA1-209ENST00000470026 ANAPC15P60006 121 aa16.72■□□□□ 0.27
BRCA1-209ENST00000470026 TAF7Q15545 349 aaPredicted RBP16.72■□□□□ 0.27
BRCA1-209ENST00000470026 PPP1R9BQ96SB3 815 aa16.72■□□□□ 0.27
BRCA1-209ENST00000470026 MCTP1Q6DN14 999 aa16.7■□□□□ 0.26
BRCA1-209ENST00000470026 USP44Q9H0E7 712 aa16.7■□□□□ 0.26
BRCA1-209ENST00000470026 CEMIPQ8WUJ3 1361 aa16.7■□□□□ 0.26
BRCA1-209ENST00000470026 ESPNB1AK53 854 aa16.7■□□□□ 0.26
BRCA1-209ENST00000470026 CHMLP26374 656 aa16.7■□□□□ 0.26
BRCA1-209ENST00000470026 CUL4AQ13619 759 aa16.7■□□□□ 0.26
BRCA1-209ENST00000470026 THEMISQ8N1K5 641 aaPredicted RBP16.69■□□□□ 0.26
BRCA1-209ENST00000470026 SSH3Q8TE77 659 aa16.69■□□□□ 0.26
BRCA1-209ENST00000470026 CCDC173Q0VFZ6 552 aa16.69■□□□□ 0.26
BRCA1-209ENST00000470026 LRRFIP2Q9Y608 721 aaKnown RBP16.69■□□□□ 0.26
BRCA1-209ENST00000470026 ERBB4Q15303 1308 aa16.69■□□□□ 0.26
BRCA1-209ENST00000470026 TMX3Q96JJ7 454 aa16.68■□□□□ 0.26
BRCA1-209ENST00000470026 FER1L4A9Z1Z3 1794 aa16.67■□□□□ 0.26
BRCA1-209ENST00000470026 KDM3BQ7LBC6 1761 aa16.67■□□□□ 0.26
BRCA1-209ENST00000470026 POLA2Q14181 598 aa16.67■□□□□ 0.26
BRCA1-209ENST00000470026 TSHZ3Q63HK5 1081 aa16.67■□□□□ 0.26
BRCA1-209ENST00000470026 INTS4Q96HW7 963 aaKnown RBP16.67■□□□□ 0.26
BRCA1-209ENST00000470026 LTN1O94822 1766 aa16.67■□□□□ 0.26
BRCA1-209ENST00000470026 NASPP49321 788 aaPredicted RBP16.66■□□□□ 0.26
BRCA1-209ENST00000470026 NEK4P51957 841 aa16.66■□□□□ 0.26
BRCA1-209ENST00000470026 PHRF1Q9P1Y6 1649 aaKnown RBP16.66■□□□□ 0.26
BRCA1-209ENST00000470026 NFAT5O94916 1531 aa16.66■□□□□ 0.26
BRCA1-209ENST00000470026 RAB11FIP3O75154 756 aa16.66■□□□□ 0.26
BRCA1-209ENST00000470026 HOXB7P09629 217 aa16.66■□□□□ 0.26
BRCA1-209ENST00000470026 KCNA6P17658 529 aa16.66■□□□□ 0.26
BRCA1-209ENST00000470026 MCCP23508 829 aa16.66■□□□□ 0.26
BRCA1-209ENST00000470026 ZSCAN23Q3MJ62 389 aa16.66■□□□□ 0.26
BRCA1-209ENST00000470026 PALD1Q9ULE6 856 aa16.66■□□□□ 0.26
BRCA1-209ENST00000470026 UBTFL1P0CB47 393 aaPredicted RBP16.65■□□□□ 0.26
BRCA1-209ENST00000470026 CRYBG1Q9Y4K1 1723 aa16.65■□□□□ 0.26
BRCA1-209ENST00000470026 BRD1O95696 1058 aa16.64■□□□□ 0.25
BRCA1-209ENST00000470026 GPT2Q8TD30 523 aa16.64■□□□□ 0.25
BRCA1-209ENST00000470026 TRIM44Q96DX7 344 aaPredicted RBP16.64■□□□□ 0.25
BRCA1-209ENST00000470026 HDGFL1Q5TGJ6 251 aa16.64■□□□□ 0.25
BRCA1-209ENST00000470026 CAVIN1Q6NZI2 390 aaKnown RBP16.64■□□□□ 0.25
BRCA1-209ENST00000470026 UNC5CLQ8IV45 518 aa16.64■□□□□ 0.25
BRCA1-209ENST00000470026 ABTB2Q8N961 1025 aa16.64■□□□□ 0.25
BRCA1-209ENST00000470026 LMO7Q8WWI1 1683 aa16.63■□□□□ 0.25
BRCA1-209ENST00000470026 IP6K1Q92551 441 aa16.63■□□□□ 0.25
BRCA1-209ENST00000470026 NECTIN2Q92692 538 aa16.63■□□□□ 0.25
BRCA1-209ENST00000470026 PHAXQ9H814 394 aaKnown RBP16.63■□□□□ 0.25
BRCA1-209ENST00000470026 PRPF40AO75400 957 aaKnown RBP16.62■□□□□ 0.25
BRCA1-209ENST00000470026 EIF4A1P60842 406 aaKnown RBP16.62■□□□□ 0.25
BRCA1-209ENST00000470026 PLEKHG5O94827 1062 aa16.61■□□□□ 0.25
BRCA1-209ENST00000470026 HSPA4P34932 840 aa16.61■□□□□ 0.25
BRCA1-209ENST00000470026 NUTM2GQ5VZR2 741 aa16.61■□□□□ 0.25
BRCA1-209ENST00000470026 PI4K2BQ8TCG2 481 aa16.61■□□□□ 0.25
BRCA1-209ENST00000470026 RILPL2Q969X0 211 aa16.61■□□□□ 0.25
BRCA1-209ENST00000470026 CHMP4AQ9BY43 222 aa16.61■□□□□ 0.25
BRCA1-209ENST00000470026 ANO2Q9NQ90 1003 aa16.61■□□□□ 0.25
BRCA1-209ENST00000470026 TRIM6-TRIM34B2RNG4 842 aa16.61■□□□□ 0.25
BRCA1-209ENST00000470026 PPP1R42Q7Z4L9 355 aa16.61■□□□□ 0.25
BRCA1-209ENST00000470026 USP42Q9H9J4 1324 aaKnown RBP16.6■□□□□ 0.25
BRCA1-209ENST00000470026 NCAPD2Q15021 1401 aa16.6■□□□□ 0.25
BRCA1-209ENST00000470026 ADGRL3Q9HAR2 1447 aa16.6■□□□□ 0.25
BRCA1-209ENST00000470026 CHD2O14647 1828 aaKnown RBP16.6■□□□□ 0.25
BRCA1-209ENST00000470026 PLPPR3Q6T4P5 718 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms