RNA–Protein interactions for RNA: ENST00000463486.5

VPS52-214, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 925 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-214ENST00000463486 SLC4A9Q96Q91 983 aa23.57■■□□□ 1.36
VPS52-214ENST00000463486 CCDC184Q52MB2 194 aa23.56■■□□□ 1.36
VPS52-214ENST00000463486 CEMIPQ8WUJ3 1361 aa23.55■■□□□ 1.36
VPS52-214ENST00000463486 PDGFDQ9GZP0 370 aaPredicted RBP23.55■■□□□ 1.36
VPS52-214ENST00000463486 VIRMAQ69YN4 1812 aaKnown RBP23.54■■□□□ 1.36
VPS52-214ENST00000463486 LOC102724428A0A0B4J2F2 783 aa23.54■■□□□ 1.36
VPS52-214ENST00000463486 SIK1P57059 783 aa23.54■■□□□ 1.36
VPS52-214ENST00000463486 STK32BQ9NY57 414 aa23.54■■□□□ 1.36
VPS52-214ENST00000463486 ITPK1Q13572 414 aa23.52■■□□□ 1.36
VPS52-214ENST00000463486 ADAMTS8Q9UP79 889 aa23.52■■□□□ 1.36
VPS52-214ENST00000463486 TAF1LQ8IZX4 1826 aa23.51■■□□□ 1.35
VPS52-214ENST00000463486 CASZ1Q86V15 1759 aa23.5■■□□□ 1.35
VPS52-214ENST00000463486 HTATSF1O43719 755 aaKnown RBP23.5■■□□□ 1.35
VPS52-214ENST00000463486 C5P01031 1676 aa23.49■■□□□ 1.35
VPS52-214ENST00000463486 ZNF831Q5JPB2 1677 aa23.49■■□□□ 1.35
VPS52-214ENST00000463486 NFE2L2Q16236 605 aa23.49■■□□□ 1.35
VPS52-214ENST00000463486 LINC00116Q8NCU8 138 aa23.49■■□□□ 1.35
VPS52-214ENST00000463486 PNNQ9H307 717 aaKnown RBP23.49■■□□□ 1.35
VPS52-214ENST00000463486 SIPA1L3O60292 1781 aaPredicted RBP23.49■■□□□ 1.35
VPS52-214ENST00000463486 ANP32CO43423 234 aa23.48■■□□□ 1.35
VPS52-214ENST00000463486 SLC39A6Q13433 755 aa23.48■■□□□ 1.35
VPS52-214ENST00000463486 MCM10Q7L590 875 aa23.48■■□□□ 1.35
VPS52-214ENST00000463486 ATP6V1AP38606 617 aa23.47■■□□□ 1.35
VPS52-214ENST00000463486 DCTN1Q14203 1278 aa23.47■■□□□ 1.35
VPS52-214ENST00000463486 PNPLA7Q6ZV29 1317 aa23.47■■□□□ 1.35
VPS52-214ENST00000463486 PTCD1O75127 700 aaKnown RBP23.46■■□□□ 1.35
VPS52-214ENST00000463486 AMIGO3Q86WK7 504 aa23.46■■□□□ 1.35
VPS52-214ENST00000463486 TUBGCP6Q96RT7 1819 aa23.45■■□□□ 1.34
VPS52-214ENST00000463486 KCPQ6ZWJ8 1503 aa23.45■■□□□ 1.34
VPS52-214ENST00000463486 WDR43Q15061 677 aaKnown RBP eCLIP23.45■■□□□ 1.34
VPS52-214ENST00000463486 RBM42Q9BTD8 480 aaKnown RBP23.45■■□□□ 1.34
VPS52-214ENST00000463486 DLG5Q8TDM6 1919 aa23.45■■□□□ 1.34
VPS52-214ENST00000463486 C4BP0C0L5 1744 aa23.45■■□□□ 1.34
VPS52-214ENST00000463486 QSER1Q2KHR3 1735 aa23.45■■□□□ 1.34
VPS52-214ENST00000463486 TEFQ10587 303 aa23.44■■□□□ 1.34
VPS52-214ENST00000463486 CCDC146Q8IYE0 955 aa23.44■■□□□ 1.34
VPS52-214ENST00000463486 MAPK8IP3Q9UPT6 1336 aa23.43■■□□□ 1.34
VPS52-214ENST00000463486 PNISRQ8TF01 805 aaKnown RBP23.43■■□□□ 1.34
VPS52-214ENST00000463486 TFCP2L1Q9NZI6 479 aa23.43■■□□□ 1.34
VPS52-214ENST00000463486 LRP5O75197 1615 aa23.42■■□□□ 1.34
VPS52-214ENST00000463486 CICQ96RK0 1608 aaPredicted RBP23.42■■□□□ 1.34
VPS52-214ENST00000463486 NEFMP07197 916 aa23.42■■□□□ 1.34
VPS52-214ENST00000463486 TMPOP42166 694 aaKnown RBP23.42■■□□□ 1.34
VPS52-214ENST00000463486 RTF1Q92541 710 aaKnown RBP23.42■■□□□ 1.34
VPS52-214ENST00000463486 RUNDC1Q96C34 613 aa23.42■■□□□ 1.34
VPS52-214ENST00000463486 UBR2Q8IWV8 1755 aa23.42■■□□□ 1.34
VPS52-214ENST00000463486 HMGB2P26583 209 aaKnown RBP23.41■■□□□ 1.34
VPS52-214ENST00000463486 ZNF790Q6PG37 636 aa23.41■■□□□ 1.34
VPS52-214ENST00000463486 COL5A3P25940 1745 aaPredicted RBP23.41■■□□□ 1.34
VPS52-214ENST00000463486 TJP1Q07157 1748 aa23.4■■□□□ 1.34
VPS52-214ENST00000463486 KCNQ3O43525 872 aa23.4■■□□□ 1.34
VPS52-214ENST00000463486 SMIM5Q71RC9 77 aa23.4■■□□□ 1.34
VPS52-214ENST00000463486 COL23A1Q86Y22 540 aaPredicted RBP23.4■■□□□ 1.34
VPS52-214ENST00000463486 RIPK4P57078 832 aa23.39■■□□□ 1.33
VPS52-214ENST00000463486 RC3H1Q5TC82 1133 aaKnown RBP23.39■■□□□ 1.33
VPS52-214ENST00000463486 ZNF496Q96IT1 587 aaPredicted RBP23.39■■□□□ 1.33
VPS52-214ENST00000463486 THUMPD2Q9BTF0 503 aaKnown RBP23.39■■□□□ 1.33
VPS52-214ENST00000463486 UBR3Q6ZT12 1888 aa23.39■■□□□ 1.33
VPS52-214ENST00000463486 ZBTB7AO95365 584 aa23.38■■□□□ 1.33
VPS52-214ENST00000463486 PTGER2P43116 358 aa23.38■■□□□ 1.33
VPS52-214ENST00000463486 VSIG10Q8N0Z9 540 aa23.38■■□□□ 1.33
VPS52-214ENST00000463486 SGIP1Q9BQI5 828 aa23.38■■□□□ 1.33
VPS52-214ENST00000463486 MYH14Q7Z406 1995 aaKnown RBP23.38■■□□□ 1.33
VPS52-214ENST00000463486 BTBD11A6QL63 1104 aa23.37■■□□□ 1.33
VPS52-214ENST00000463486 TAF7Q15545 349 aaPredicted RBP23.37■■□□□ 1.33
VPS52-214ENST00000463486 DNAJC10Q8IXB1 793 aa23.37■■□□□ 1.33
VPS52-214ENST00000463486 MRS2Q9HD23 443 aa23.37■■□□□ 1.33
VPS52-214ENST00000463486 TRIM35Q9UPQ4 493 aa23.37■■□□□ 1.33
VPS52-214ENST00000463486 RRP7AQ9Y3A4 280 aaKnown RBP23.37■■□□□ 1.33
VPS52-214ENST00000463486 CNTNAP4Q9C0A0 1308 aa23.36■■□□□ 1.33
VPS52-214ENST00000463486 AK7Q96M32 723 aa23.36■■□□□ 1.33
VPS52-214ENST00000463486 MTFR1LQ9H019 292 aa23.36■■□□□ 1.33
VPS52-214ENST00000463486 SPON1Q9HCB6 807 aa23.36■■□□□ 1.33
VPS52-214ENST00000463486 INTS5Q6P9B9 1019 aaKnown RBP23.35■■□□□ 1.33
VPS52-214ENST00000463486 SLC16A10Q8TF71 515 aa23.35■■□□□ 1.33
VPS52-214ENST00000463486 CYP19A1P11511 503 aaPredicted RBP23.34■■□□□ 1.33
VPS52-214ENST00000463486 SSFA2P28290 1259 aa23.34■■□□□ 1.33
VPS52-214ENST00000463486 TTC5Q8N0Z6 440 aa23.34■■□□□ 1.33
VPS52-214ENST00000463486 ATF5Q9Y2D1 282 aaPredicted RBP23.34■■□□□ 1.33
VPS52-214ENST00000463486 HEG1Q9ULI3 1381 aa23.33■■□□□ 1.33
VPS52-214ENST00000463486 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.33■■□□□ 1.33
VPS52-214ENST00000463486 GNPATO15228 680 aa23.33■■□□□ 1.33
VPS52-214ENST00000463486 CRKLP46109 303 aaKnown RBP23.33■■□□□ 1.33
VPS52-214ENST00000463486 FLAD1Q8NFF5 587 aa23.33■■□□□ 1.33
VPS52-214ENST00000463486 MIS18AQ9NYP9 233 aa23.33■■□□□ 1.33
VPS52-214ENST00000463486 COL24A1Q17RW2 1714 aa23.33■■□□□ 1.32
VPS52-214ENST00000463486 RPS6KA4O75676 772 aa23.32■■□□□ 1.32
VPS52-214ENST00000463486 APAF1O14727 1248 aa23.31■■□□□ 1.32
VPS52-214ENST00000463486 NEUROD2Q15784 382 aa23.3■■□□□ 1.32
VPS52-214ENST00000463486 FMNL2Q96PY5 1086 aa23.3■■□□□ 1.32
VPS52-214ENST00000463486 PHF14O94880 888 aa23.29■■□□□ 1.32
VPS52-214ENST00000463486 KDM3BQ7LBC6 1761 aa23.28■■□□□ 1.32
VPS52-214ENST00000463486 LMOD3Q0VAK6 560 aa23.28■■□□□ 1.32
VPS52-214ENST00000463486 ARHGEF1Q92888 912 aaKnown RBP23.28■■□□□ 1.32
VPS52-214ENST00000463486 CCDC87Q9NVE4 849 aa23.28■■□□□ 1.32
VPS52-214ENST00000463486 RTCBQ9Y3I0 505 aaKnown RBP23.28■■□□□ 1.32
VPS52-214ENST00000463486 PRAMEF22A3QJZ6 481 aa23.27■■□□□ 1.32
VPS52-214ENST00000463486 MSH5O43196 834 aa23.26■■□□□ 1.31
VPS52-214ENST00000463486 ADRA2BP18089 450 aa23.26■■□□□ 1.31
VPS52-214ENST00000463486 TRAPPC3LQ5T215 181 aa23.26■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms