RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 C5P01031 1676 aa22.77■■□□□ 1.24
LIME1-202ENST00000444951 GOLGB1Q14789 3259 aaKnown RBP22.77■■□□□ 1.24
LIME1-202ENST00000444951 MAP3K5Q99683 1374 aa22.77■■□□□ 1.24
LIME1-202ENST00000444951 PHACTR3Q96KR7 559 aa22.77■■□□□ 1.24
LIME1-202ENST00000444951 TAF1LQ8IZX4 1826 aa22.76■■□□□ 1.23
LIME1-202ENST00000444951 SLC16A10Q8TF71 515 aa22.76■■□□□ 1.23
LIME1-202ENST00000444951 RUNDC1Q96C34 613 aa22.75■■□□□ 1.23
LIME1-202ENST00000444951 PLEKHF1Q96S99 279 aa22.75■■□□□ 1.23
LIME1-202ENST00000444951 PLEKHO1Q53GL0 409 aaPredicted RBP22.74■■□□□ 1.23
LIME1-202ENST00000444951 MPRIPQ6WCQ1 1025 aa22.74■■□□□ 1.23
LIME1-202ENST00000444951 PALLDQ8WX93 1383 aa22.74■■□□□ 1.23
LIME1-202ENST00000444951 COL23A1Q86Y22 540 aaPredicted RBP22.73■■□□□ 1.23
LIME1-202ENST00000444951 SPG7Q9UQ90 795 aa22.73■■□□□ 1.23
LIME1-202ENST00000444951 MTHFSDQ2M296 383 aaKnown RBP22.72■■□□□ 1.23
LIME1-202ENST00000444951 ZNF530Q6P9A1 599 aaPredicted RBP22.72■■□□□ 1.23
LIME1-202ENST00000444951 KLHL34Q8N239 644 aa22.72■■□□□ 1.23
LIME1-202ENST00000444951 RRP7AQ9Y3A4 280 aaKnown RBP22.72■■□□□ 1.23
LIME1-202ENST00000444951 NEUROD2Q15784 382 aa22.71■■□□□ 1.23
LIME1-202ENST00000444951 AMOTQ4VCS5 1084 aa22.71■■□□□ 1.23
LIME1-202ENST00000444951 CHD4Q14839 1912 aa22.7■■□□□ 1.23
LIME1-202ENST00000444951 APAF1O14727 1248 aa22.7■■□□□ 1.22
LIME1-202ENST00000444951 POLD1P28340 1107 aa22.7■■□□□ 1.22
LIME1-202ENST00000444951 PIGBQ92521 554 aa22.7■■□□□ 1.22
LIME1-202ENST00000444951 MSH5O43196 834 aa22.69■■□□□ 1.22
LIME1-202ENST00000444951 MSL1Q68DK7 614 aa22.69■■□□□ 1.22
LIME1-202ENST00000444951 AMIGO3Q86WK7 504 aa22.69■■□□□ 1.22
LIME1-202ENST00000444951 NLGN2Q8NFZ4 835 aa22.69■■□□□ 1.22
LIME1-202ENST00000444951 SALL2Q9Y467 1007 aaPredicted RBP22.69■■□□□ 1.22
LIME1-202ENST00000444951 C4BP0C0L5 1744 aa22.68■■□□□ 1.22
LIME1-202ENST00000444951 NKX1-1Q15270 411 aaPredicted RBP22.68■■□□□ 1.22
LIME1-202ENST00000444951 NFE2L2Q16236 605 aa22.67■■□□□ 1.22
LIME1-202ENST00000444951 C1orf141Q5JVX7 400 aa22.67■■□□□ 1.22
LIME1-202ENST00000444951 SMIM5Q71RC9 77 aa22.67■■□□□ 1.22
LIME1-202ENST00000444951 GAS2L2Q8NHY3 880 aa22.67■■□□□ 1.22
LIME1-202ENST00000444951 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.67■■□□□ 1.22
LIME1-202ENST00000444951 ZNF784Q8NCA9 323 aaPredicted RBP22.66■■□□□ 1.22
LIME1-202ENST00000444951 TMPOP42166 694 aaKnown RBP22.65■■□□□ 1.22
LIME1-202ENST00000444951 RIPK4P57078 832 aa22.65■■□□□ 1.22
LIME1-202ENST00000444951 UBR3Q6ZT12 1888 aa22.64■■□□□ 1.22
LIME1-202ENST00000444951 PHKG2P15735 406 aa22.64■■□□□ 1.21
LIME1-202ENST00000444951 IFNL2Q8IZJ0 200 aa22.64■■□□□ 1.21
LIME1-202ENST00000444951 GPR162Q16538 588 aa22.63■■□□□ 1.21
LIME1-202ENST00000444951 SMARCC1Q92922 1105 aaPredicted RBP22.63■■□□□ 1.21
LIME1-202ENST00000444951 YTHDC1Q96MU7 727 aaKnown RBP22.63■■□□□ 1.21
LIME1-202ENST00000444951 AKAP4Q5JQC9 854 aa22.62■■□□□ 1.21
LIME1-202ENST00000444951 PLEKHG2Q9H7P9 1386 aa22.62■■□□□ 1.21
LIME1-202ENST00000444951 GNAT3A8MTJ3 354 aa22.61■■□□□ 1.21
LIME1-202ENST00000444951 HNRNPUQ00839 825 aaKnown RBP eCLIP22.61■■□□□ 1.21
LIME1-202ENST00000444951 PELP1Q8IZL8 1130 aaKnown RBP22.61■■□□□ 1.21
LIME1-202ENST00000444951 LINC00116Q8NCU8 138 aa22.61■■□□□ 1.21
LIME1-202ENST00000444951 ASAP1Q9ULH1 1129 aa22.61■■□□□ 1.21
LIME1-202ENST00000444951 DCTN1Q14203 1278 aa22.6■■□□□ 1.21
LIME1-202ENST00000444951 RTF1Q92541 710 aaKnown RBP22.6■■□□□ 1.21
LIME1-202ENST00000444951 DLG5Q8TDM6 1919 aa22.6■■□□□ 1.21
LIME1-202ENST00000444951 LOC102724428A0A0B4J2F2 783 aa22.59■■□□□ 1.21
LIME1-202ENST00000444951 SIK1P57059 783 aa22.59■■□□□ 1.21
LIME1-202ENST00000444951 ITPK1Q13572 414 aa22.59■■□□□ 1.21
LIME1-202ENST00000444951 MCM10Q7L590 875 aa22.59■■□□□ 1.21
LIME1-202ENST00000444951 AK7Q96M32 723 aa22.59■■□□□ 1.21
LIME1-202ENST00000444951 TMOD3Q9NYL9 352 aa22.59■■□□□ 1.21
LIME1-202ENST00000444951 PHF14O94880 888 aa22.58■■□□□ 1.21
LIME1-202ENST00000444951 YBX3P16989 372 aaKnown RBP eCLIP22.58■■□□□ 1.21
LIME1-202ENST00000444951 LGR6Q9HBX8 967 aa22.58■■□□□ 1.21
LIME1-202ENST00000444951 HSP90AB1P08238 724 aaKnown RBP22.57■■□□□ 1.2
LIME1-202ENST00000444951 THUMPD2Q9BTF0 503 aaKnown RBP22.57■■□□□ 1.2
LIME1-202ENST00000444951 FLAD1Q8NFF5 587 aa22.56■■□□□ 1.2
LIME1-202ENST00000444951 ATG3Q9NT62 314 aa22.56■■□□□ 1.2
LIME1-202ENST00000444951 TRIM35Q9UPQ4 493 aa22.56■■□□□ 1.2
LIME1-202ENST00000444951 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.55■■□□□ 1.2
LIME1-202ENST00000444951 RNMTO43148 476 aaKnown RBP22.55■■□□□ 1.2
LIME1-202ENST00000444951 LMOD3Q0VAK6 560 aa22.55■■□□□ 1.2
LIME1-202ENST00000444951 DCAF5Q96JK2 942 aa22.55■■□□□ 1.2
LIME1-202ENST00000444951 IL17REQ8NFR9 667 aa22.54■■□□□ 1.2
LIME1-202ENST00000444951 KDM6AO15550 1401 aaPredicted RBP22.54■■□□□ 1.2
LIME1-202ENST00000444951 SLC4A9Q96Q91 983 aa22.53■■□□□ 1.2
LIME1-202ENST00000444951 HTATSF1O43719 755 aaKnown RBP22.52■■□□□ 1.2
LIME1-202ENST00000444951 ATP6V1AP38606 617 aa22.52■■□□□ 1.2
LIME1-202ENST00000444951 SSFA2P28290 1259 aa22.51■■□□□ 1.19
LIME1-202ENST00000444951 VIRMAQ69YN4 1812 aaKnown RBP22.5■■□□□ 1.19
LIME1-202ENST00000444951 GNPATO15228 680 aa22.5■■□□□ 1.19
LIME1-202ENST00000444951 CABP4P57796 275 aa22.5■■□□□ 1.19
LIME1-202ENST00000444951 TEFQ10587 303 aa22.5■■□□□ 1.19
LIME1-202ENST00000444951 WWC1Q8IX03 1113 aa22.5■■□□□ 1.19
LIME1-202ENST00000444951 LAS1LQ9Y4W2 734 aaKnown RBP22.5■■□□□ 1.19
LIME1-202ENST00000444951 SCN11AQ9UI33 1791 aa22.5■■□□□ 1.19
LIME1-202ENST00000444951 CD2APQ9Y5K6 639 aa22.49■■□□□ 1.19
LIME1-202ENST00000444951 COL5A3P25940 1745 aaPredicted RBP22.48■■□□□ 1.19
LIME1-202ENST00000444951 ERVV-2B6SEH9 535 aa22.48■■□□□ 1.19
LIME1-202ENST00000444951 HMGB2P26583 209 aaKnown RBP22.48■■□□□ 1.19
LIME1-202ENST00000444951 CCDC27Q2M243 656 aa22.48■■□□□ 1.19
LIME1-202ENST00000444951 NGEFQ8N5V2 710 aa22.47■■□□□ 1.19
LIME1-202ENST00000444951 NFATC2IPQ8NCF5 419 aa22.47■■□□□ 1.19
LIME1-202ENST00000444951 ZNF831Q5JPB2 1677 aa22.46■■□□□ 1.19
LIME1-202ENST00000444951 RBM42Q9BTD8 480 aaKnown RBP22.46■■□□□ 1.19
LIME1-202ENST00000444951 SLC52A2Q9HAB3 445 aa22.46■■□□□ 1.19
LIME1-202ENST00000444951 CEMIPQ8WUJ3 1361 aa22.46■■□□□ 1.19
LIME1-202ENST00000444951 ADAMTS7Q9UKP4 1686 aa22.46■■□□□ 1.19
LIME1-202ENST00000444951 MYH14Q7Z406 1995 aaKnown RBP22.45■■□□□ 1.18
LIME1-202ENST00000444951 MIS18AQ9NYP9 233 aa22.45■■□□□ 1.18
LIME1-202ENST00000444951 WWC3Q9ULE0 1092 aa22.45■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms