RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 GADD45BO75293 160 aaPredicted RBP3.54□□□□□ -1.84
CCDC88A-205ENST00000426576 MMP10P09238 476 aa3.54□□□□□ -1.84
CCDC88A-205ENST00000426576 TEFQ10587 303 aa3.54□□□□□ -1.84
CCDC88A-205ENST00000426576 PABPC4Q13310 644 aaKnown RBP eCLIP3.54□□□□□ -1.84
CCDC88A-205ENST00000426576 NBPF6Q5VWK0 638 aa3.54□□□□□ -1.84
CCDC88A-205ENST00000426576 HEATR6Q6AI08 1181 aaKnown RBP3.54□□□□□ -1.84
CCDC88A-205ENST00000426576 NBPF5PQ86XG9 351 aaPredicted RBP3.54□□□□□ -1.84
CCDC88A-205ENST00000426576 RETREG2Q8NC44 543 aa3.54□□□□□ -1.84
CCDC88A-205ENST00000426576 NKD2Q969F2 451 aaPredicted RBP3.54□□□□□ -1.84
CCDC88A-205ENST00000426576 NBPF4Q96M43 638 aa3.54□□□□□ -1.84
CCDC88A-205ENST00000426576 SCAPERQ9BY12 1400 aa3.53□□□□□ -1.84
CCDC88A-205ENST00000426576 EPHX2P34913 555 aa3.53□□□□□ -1.84
CCDC88A-205ENST00000426576 FAM47CQ5HY64 1035 aa3.53□□□□□ -1.84
CCDC88A-205ENST00000426576 DRC1Q96MC2 740 aa3.53□□□□□ -1.84
CCDC88A-205ENST00000426576 EYA3Q99504 573 aa3.53□□□□□ -1.84
CCDC88A-205ENST00000426576 FEZ1Q99689 392 aa3.53□□□□□ -1.84
CCDC88A-205ENST00000426576 NPHP4O75161 1426 aaPredicted RBP3.53□□□□□ -1.84
CCDC88A-205ENST00000426576 TNPO2O14787 897 aaKnown RBP3.53□□□□□ -1.84
CCDC88A-205ENST00000426576 RIMBP2O15034 1052 aa3.53□□□□□ -1.84
CCDC88A-205ENST00000426576 NCLP19338 710 aaKnown RBP3.53□□□□□ -1.84
CCDC88A-205ENST00000426576 ATP2B1P20020 1258 aa3.53□□□□□ -1.84
CCDC88A-205ENST00000426576 ATP6V1AP38606 617 aa3.53□□□□□ -1.84
CCDC88A-205ENST00000426576 ARID5BQ14865 1188 aa3.53□□□□□ -1.84
CCDC88A-205ENST00000426576 FBXO46Q6PJ61 603 aaPredicted RBP3.53□□□□□ -1.84
CCDC88A-205ENST00000426576 ATRIPQ8WXE1 791 aa3.53□□□□□ -1.84
CCDC88A-205ENST00000426576 RNPC3Q96LT9 517 aaKnown RBP3.53□□□□□ -1.84
CCDC88A-205ENST00000426576 G3BP2Q9UN86 482 aaKnown RBP3.53□□□□□ -1.84
CCDC88A-205ENST00000426576 PDZRN3Q9UPQ7 1066 aa3.53□□□□□ -1.84
CCDC88A-205ENST00000426576 GRIN2BQ13224 1484 aa3.53□□□□□ -1.84
CCDC88A-205ENST00000426576 A0A087WZG4 1122 aa3.53□□□□□ -1.84
CCDC88A-205ENST00000426576 CDK11BP21127 795 aaKnown RBP3.53□□□□□ -1.84
CCDC88A-205ENST00000426576 ACAP1Q15027 740 aa3.53□□□□□ -1.84
CCDC88A-205ENST00000426576 CCDC93Q567U6 631 aa3.53□□□□□ -1.84
CCDC88A-205ENST00000426576 SNX27Q96L92 541 aa3.53□□□□□ -1.84
CCDC88A-205ENST00000426576 PHF12Q96QT6 1004 aa3.53□□□□□ -1.84
CCDC88A-205ENST00000426576 SETDB2Q96T68 719 aa3.53□□□□□ -1.84
CCDC88A-205ENST00000426576 ZC3H12CQ9C0D7 883 aaKnown RBP3.53□□□□□ -1.84
CCDC88A-205ENST00000426576 HMX1Q9NP08 348 aaPredicted RBP3.53□□□□□ -1.84
CCDC88A-205ENST00000426576 ATP11BQ9Y2G3 1177 aa3.53□□□□□ -1.84
CCDC88A-205ENST00000426576 CCNB3Q8WWL7 1395 aa3.53□□□□□ -1.84
CCDC88A-205ENST00000426576 COL26A1Q96A83 441 aa3.52□□□□□ -1.85
CCDC88A-205ENST00000426576 DDRGK1Q96HY6 314 aa3.52□□□□□ -1.85
CCDC88A-205ENST00000426576 DNAJC2Q99543 621 aaKnown RBP3.52□□□□□ -1.85
CCDC88A-205ENST00000426576 MPHOSPH6Q99547 160 aaKnown RBP3.52□□□□□ -1.85
CCDC88A-205ENST00000426576 GBA2Q9HCG7 927 aaPredicted RBP3.52□□□□□ -1.85
CCDC88A-205ENST00000426576 ANO2Q9NQ90 1003 aa3.52□□□□□ -1.85
CCDC88A-205ENST00000426576 RTL5Q5HYW3 569 aaPredicted RBP3.52□□□□□ -1.85
CCDC88A-205ENST00000426576 GORABQ5T7V8 394 aa3.52□□□□□ -1.85
CCDC88A-205ENST00000426576 ZBTB38Q8NAP3 1195 aaPredicted RBP3.52□□□□□ -1.85
CCDC88A-205ENST00000426576 SMARCA4P51532 1647 aa3.52□□□□□ -1.85
CCDC88A-205ENST00000426576 CFAP43Q8NDM7 1665 aa3.52□□□□□ -1.85
CCDC88A-205ENST00000426576 SPG11Q96JI7 2443 aa3.52□□□□□ -1.85
CCDC88A-205ENST00000426576 ST18O60284 1047 aa3.52□□□□□ -1.85
CCDC88A-205ENST00000426576 IREB2P48200 963 aaKnown RBP3.52□□□□□ -1.85
CCDC88A-205ENST00000426576 CABP4P57796 275 aa3.52□□□□□ -1.85
CCDC88A-205ENST00000426576 NBR1Q14596 966 aa3.52□□□□□ -1.85
CCDC88A-205ENST00000426576 SUPT20HL1Q3ZLR7 823 aa3.52□□□□□ -1.85
CCDC88A-205ENST00000426576 RSPH4AQ5TD94 716 aa3.52□□□□□ -1.85
CCDC88A-205ENST00000426576 PIP4P2Q8N4L2 257 aa3.52□□□□□ -1.85
CCDC88A-205ENST00000426576 TTC16Q8NEE8 873 aa3.52□□□□□ -1.85
CCDC88A-205ENST00000426576 ZNF692Q9BU19 519 aaPredicted RBP3.52□□□□□ -1.85
CCDC88A-205ENST00000426576 GDPD2Q9HCC8 539 aa3.52□□□□□ -1.85
CCDC88A-205ENST00000426576 PRDM6Q9NQX0 595 aa3.52□□□□□ -1.85
CCDC88A-205ENST00000426576 BRD4O60885 1362 aaPredicted RBP3.52□□□□□ -1.85
CCDC88A-205ENST00000426576 PARD3Q8TEW0 1356 aa3.52□□□□□ -1.85
CCDC88A-205ENST00000426576 POTEFA5A3E0 1075 aa3.52□□□□□ -1.85
CCDC88A-205ENST00000426576 STARD3NLO95772 234 aa3.52□□□□□ -1.85
CCDC88A-205ENST00000426576 ST3GAL2Q16842 350 aa3.52□□□□□ -1.85
CCDC88A-205ENST00000426576 INF2Q27J81 1249 aa3.52□□□□□ -1.85
CCDC88A-205ENST00000426576 AMER1Q5JTC6 1135 aaPredicted RBP3.52□□□□□ -1.85
CCDC88A-205ENST00000426576 GAS2L2Q8NHY3 880 aa3.52□□□□□ -1.85
CCDC88A-205ENST00000426576 ANKIB1Q9P2G1 1089 aa3.52□□□□□ -1.85
CCDC88A-205ENST00000426576 ASXL2Q76L83 1435 aa3.51□□□□□ -1.85
CCDC88A-205ENST00000426576 PITPNM1O00562 1244 aa3.51□□□□□ -1.85
CCDC88A-205ENST00000426576 VEGFBP49765 207 aa3.51□□□□□ -1.85
CCDC88A-205ENST00000426576 EFCAB3Q8N7B9 438 aa3.51□□□□□ -1.85
CCDC88A-205ENST00000426576 UTP3Q9NQZ2 479 aaKnown RBP eCLIP3.51□□□□□ -1.854e-6■■■■■ 38.5
CCDC88A-205ENST00000426576 SPG7Q9UQ90 795 aa3.51□□□□□ -1.85
CCDC88A-205ENST00000426576 R3HCC1Q9Y3T6 440 aaKnown RBP3.51□□□□□ -1.85
CCDC88A-205ENST00000426576 USP6P35125 1406 aa3.51□□□□□ -1.85
CCDC88A-205ENST00000426576 ZNF316A6NFI3 1004 aaPredicted RBP3.51□□□□□ -1.85
CCDC88A-205ENST00000426576 LARP6Q9BRS8 491 aaKnown RBP3.51□□□□□ -1.85
CCDC88A-205ENST00000426576 FAM117AQ9C073 453 aa3.51□□□□□ -1.85
CCDC88A-205ENST00000426576 PICK1Q9NRD5 415 aa3.51□□□□□ -1.85
CCDC88A-205ENST00000426576 TBC1D2BQ9UPU7 963 aa3.51□□□□□ -1.85
CCDC88A-205ENST00000426576 LRRFIP2Q9Y608 721 aaKnown RBP3.51□□□□□ -1.85
CCDC88A-205ENST00000426576 NAV3Q8IVL0 2385 aa3.51□□□□□ -1.85
CCDC88A-205ENST00000426576 ABCA4P78363 2273 aa3.51□□□□□ -1.85
CCDC88A-205ENST00000426576 A0A0G2JLW4 131 aa3.51□□□□□ -1.85
CCDC88A-205ENST00000426576 MRE11P49959 708 aa3.51□□□□□ -1.85
CCDC88A-205ENST00000426576 IRX3P78415 501 aaPredicted RBP3.51□□□□□ -1.85
CCDC88A-205ENST00000426576 KIF6Q6ZMV9 814 aa3.51□□□□□ -1.85
CCDC88A-205ENST00000426576 DDX46Q7L014 1031 aaKnown RBP3.51□□□□□ -1.85
CCDC88A-205ENST00000426576 SHCBP1Q8NEM2 672 aa3.51□□□□□ -1.85
CCDC88A-205ENST00000426576 SCLT1Q96NL6 688 aa3.51□□□□□ -1.85
CCDC88A-205ENST00000426576 POP1Q99575 1024 aaKnown RBP3.51□□□□□ -1.85
CCDC88A-205ENST00000426576 SLC52A1Q9NWF4 448 aa3.51□□□□□ -1.85
CCDC88A-205ENST00000426576 TFIP11Q9UBB9 837 aaKnown RBP3.51□□□□□ -1.85
CCDC88A-205ENST00000426576 PCDHB13Q9Y5F0 798 aa3.51□□□□□ -1.85
CCDC88A-205ENST00000426576 ARAP1Q96P48 1450 aa3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms