RNA–Protein interactions for RNA: ENST00000409783.6

PTCD3-203, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5

Gene PTCD3, Length 587 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-203ENST00000409783 KCNQ4P56696 695 aa29.66■■■□□ 2.34
PTCD3-203ENST00000409783 TAF1LQ8IZX4 1826 aa29.66■■■□□ 2.34
PTCD3-203ENST00000409783 NEFMP07197 916 aa29.65■■■□□ 2.34
PTCD3-203ENST00000409783 NFE2L2Q16236 605 aa29.65■■■□□ 2.34
PTCD3-203ENST00000409783 HTATSF1O43719 755 aaKnown RBP29.64■■■□□ 2.34
PTCD3-203ENST00000409783 CCNL1Q9UK58 526 aaPredicted RBP29.64■■■□□ 2.34
PTCD3-203ENST00000409783 MAPK8IP3Q9UPT6 1336 aa29.64■■■□□ 2.34
PTCD3-203ENST00000409783 CCDC146Q8IYE0 955 aa29.63■■■□□ 2.33
PTCD3-203ENST00000409783 PNISRQ8TF01 805 aaKnown RBP29.63■■■□□ 2.33
PTCD3-203ENST00000409783 MRS2Q9HD23 443 aa29.63■■■□□ 2.33
PTCD3-203ENST00000409783 NBPF14Q5TI25 921 aa29.62■■■□□ 2.33
PTCD3-203ENST00000409783 RUNDC1Q96C34 613 aa29.62■■■□□ 2.33
PTCD3-203ENST00000409783 C5P01031 1676 aa29.62■■■□□ 2.33
PTCD3-203ENST00000409783 ZNF831Q5JPB2 1677 aa29.62■■■□□ 2.33
PTCD3-203ENST00000409783 R3HDM1Q15032 1099 aaKnown RBP29.61■■■□□ 2.33
PTCD3-203ENST00000409783 LOC102724428A0A0B4J2F2 783 aa29.6■■■□□ 2.33
PTCD3-203ENST00000409783 PSDA5PKW4 1024 aaPredicted RBP29.6■■■□□ 2.33
PTCD3-203ENST00000409783 SIK1P57059 783 aa29.6■■■□□ 2.33
PTCD3-203ENST00000409783 DCTN1Q14203 1278 aa29.6■■■□□ 2.33
PTCD3-203ENST00000409783 MCM10Q7L590 875 aa29.6■■■□□ 2.33
PTCD3-203ENST00000409783 SLC4A9Q96Q91 983 aa29.6■■■□□ 2.33
PTCD3-203ENST00000409783 TMPOP42166 694 aaKnown RBP29.58■■■□□ 2.33
PTCD3-203ENST00000409783 ZNF827Q17R98 1081 aa29.58■■■□□ 2.33
PTCD3-203ENST00000409783 UBR2Q8IWV8 1755 aa29.58■■■□□ 2.33
PTCD3-203ENST00000409783 RTF1Q92541 710 aaKnown RBP29.58■■■□□ 2.33
PTCD3-203ENST00000409783 AKT1S1Q96B36 256 aa29.58■■■□□ 2.33
PTCD3-203ENST00000409783 TEFQ10587 303 aa29.57■■■□□ 2.32
PTCD3-203ENST00000409783 SLC15A2Q16348 729 aa29.57■■■□□ 2.32
PTCD3-203ENST00000409783 SLC39A6Q13433 755 aa29.56■■■□□ 2.32
PTCD3-203ENST00000409783 CICQ96RK0 1608 aaPredicted RBP29.56■■■□□ 2.32
PTCD3-203ENST00000409783 KCPQ6ZWJ8 1503 aa29.55■■■□□ 2.32
PTCD3-203ENST00000409783 TUBGCP6Q96RT7 1819 aa29.55■■■□□ 2.32
PTCD3-203ENST00000409783 ITPK1Q13572 414 aa29.55■■■□□ 2.32
PTCD3-203ENST00000409783 STK32BQ9NY57 414 aa29.55■■■□□ 2.32
PTCD3-203ENST00000409783 RIPK4P57078 832 aa29.54■■■□□ 2.32
PTCD3-203ENST00000409783 C4BP0C0L5 1744 aa29.54■■■□□ 2.32
PTCD3-203ENST00000409783 QSER1Q2KHR3 1735 aa29.54■■■□□ 2.32
PTCD3-203ENST00000409783 RBM42Q9BTD8 480 aaKnown RBP29.53■■■□□ 2.32
PTCD3-203ENST00000409783 RRP7AQ9Y3A4 280 aaKnown RBP29.53■■■□□ 2.32
PTCD3-203ENST00000409783 COL5A3P25940 1745 aaPredicted RBP29.53■■■□□ 2.32
PTCD3-203ENST00000409783 TJP1Q07157 1748 aa29.53■■■□□ 2.32
PTCD3-203ENST00000409783 CASZ1Q86V15 1759 aa29.52■■■□□ 2.32
PTCD3-203ENST00000409783 PTCD1O75127 700 aaKnown RBP29.52■■■□□ 2.32
PTCD3-203ENST00000409783 ATP6V1AP38606 617 aa29.52■■■□□ 2.32
PTCD3-203ENST00000409783 LINC00116Q8NCU8 138 aa29.51■■■□□ 2.31
PTCD3-203ENST00000409783 THUMPD2Q9BTF0 503 aaKnown RBP29.51■■■□□ 2.31
PTCD3-203ENST00000409783 DIEXFQ68CQ4 756 aaKnown RBP29.5■■■□□ 2.31
PTCD3-203ENST00000409783 ZNF790Q6PG37 636 aa29.49■■■□□ 2.31
PTCD3-203ENST00000409783 TRIM35Q9UPQ4 493 aa29.49■■■□□ 2.31
PTCD3-203ENST00000409783 APAF1O14727 1248 aa29.48■■■□□ 2.31
PTCD3-203ENST00000409783 BTBD11A6QL63 1104 aa29.47■■■□□ 2.31
PTCD3-203ENST00000409783 NEUROD2Q15784 382 aa29.47■■■□□ 2.31
PTCD3-203ENST00000409783 PDGFDQ9GZP0 370 aaPredicted RBP29.47■■■□□ 2.31
PTCD3-203ENST00000409783 UBR3Q6ZT12 1888 aa29.46■■■□□ 2.31
PTCD3-203ENST00000409783 KCNQ3O43525 872 aa29.46■■■□□ 2.31
PTCD3-203ENST00000409783 HMGB2P26583 209 aaKnown RBP29.46■■■□□ 2.31
PTCD3-203ENST00000409783 TAF7Q15545 349 aaPredicted RBP29.46■■■□□ 2.31
PTCD3-203ENST00000409783 KDM3BQ7LBC6 1761 aa29.46■■■□□ 2.31
PTCD3-203ENST00000409783 MYH14Q7Z406 1995 aaKnown RBP29.46■■■□□ 2.31
PTCD3-203ENST00000409783 LMOD3Q0VAK6 560 aa29.45■■■□□ 2.31
PTCD3-203ENST00000409783 ZNF496Q96IT1 587 aaPredicted RBP29.45■■■□□ 2.31
PTCD3-203ENST00000409783 PNPLA7Q6ZV29 1317 aa29.44■■■□□ 2.3
PTCD3-203ENST00000409783 TTC5Q8N0Z6 440 aa29.43■■■□□ 2.3
PTCD3-203ENST00000409783 CCER2I3L3R5 266 aa29.42■■■□□ 2.3
PTCD3-203ENST00000409783 AMIGO3Q86WK7 504 aa29.42■■■□□ 2.3
PTCD3-203ENST00000409783 VSIG10Q8N0Z9 540 aa29.42■■■□□ 2.3
PTCD3-203ENST00000409783 TFCP2L1Q9NZI6 479 aa29.42■■■□□ 2.3
PTCD3-203ENST00000409783 DNAJC10Q8IXB1 793 aa29.41■■■□□ 2.3
PTCD3-203ENST00000409783 MIS18AQ9NYP9 233 aa29.41■■■□□ 2.3
PTCD3-203ENST00000409783 HEG1Q9ULI3 1381 aa29.4■■■□□ 2.3
PTCD3-203ENST00000409783 CNTNAP4Q9C0A0 1308 aa29.4■■■□□ 2.3
PTCD3-203ENST00000409783 RC3H1Q5TC82 1133 aaKnown RBP29.39■■■□□ 2.3
PTCD3-203ENST00000409783 FAM9BQ8IZU0 186 aa29.39■■■□□ 2.3
PTCD3-203ENST00000409783 AK7Q96M32 723 aa29.38■■■□□ 2.29
PTCD3-203ENST00000409783 FMNL2Q96PY5 1086 aa29.38■■■□□ 2.29
PTCD3-203ENST00000409783 CYP19A1P11511 503 aaPredicted RBP29.36■■■□□ 2.29
PTCD3-203ENST00000409783 SMIM5Q71RC9 77 aa29.36■■■□□ 2.29
PTCD3-203ENST00000409783 COL23A1Q86Y22 540 aaPredicted RBP29.36■■■□□ 2.29
PTCD3-203ENST00000409783 MIER1Q8N108 512 aa29.36■■■□□ 2.29
PTCD3-203ENST00000409783 CRKLP46109 303 aaKnown RBP29.35■■■□□ 2.29
PTCD3-203ENST00000409783 LRP5O75197 1615 aa29.34■■■□□ 2.29
PTCD3-203ENST00000409783 INTS5Q6P9B9 1019 aaKnown RBP29.34■■■□□ 2.29
PTCD3-203ENST00000409783 GNPATO15228 680 aa29.33■■■□□ 2.29
PTCD3-203ENST00000409783 BABAM1Q9NWV8 329 aa29.33■■■□□ 2.29
PTCD3-203ENST00000409783 COL24A1Q17RW2 1714 aa29.32■■■□□ 2.28
PTCD3-203ENST00000409783 SENP3-EIF4A1A0A087X0R7 540 aa29.32■■■□□ 2.28
PTCD3-203ENST00000409783 SSFA2P28290 1259 aa29.32■■■□□ 2.28
PTCD3-203ENST00000409783 NCBP3Q53F19 620 aaKnown RBP29.32■■■□□ 2.28
PTCD3-203ENST00000409783 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP29.31■■■□□ 2.28
PTCD3-203ENST00000409783 RPS6KA4O75676 772 aa29.31■■■□□ 2.28
PTCD3-203ENST00000409783 EIF4A1P60842 406 aaKnown RBP29.31■■■□□ 2.28
PTCD3-203ENST00000409783 CCDC27Q2M243 656 aa29.31■■■□□ 2.28
PTCD3-203ENST00000409783 FLAD1Q8NFF5 587 aa29.31■■■□□ 2.28
PTCD3-203ENST00000409783 PRAMEF22A3QJZ6 481 aa29.3■■■□□ 2.28
PTCD3-203ENST00000409783 CHL1O00533 1208 aa29.3■■■□□ 2.28
PTCD3-203ENST00000409783 ZBTB7AO95365 584 aa29.3■■■□□ 2.28
PTCD3-203ENST00000409783 TEX13AQ9BXU3 409 aaPredicted RBP29.3■■■□□ 2.28
PTCD3-203ENST00000409783 CCDC87Q9NVE4 849 aa29.3■■■□□ 2.28
PTCD3-203ENST00000409783 SLC16A10Q8TF71 515 aa29.29■■■□□ 2.28
PTCD3-203ENST00000409783 TSPYL4Q9UJ04 414 aa29.29■■■□□ 2.28
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms