RNA–Protein interactions for RNA: ENST00000380494.9

COL4A3BP-203, Transcript of collagen type IV alpha 3 binding protein, humanhuman

TSL 2 BASIC

Gene COL4A3BP, Length 5,651 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BP-203ENST00000380494 SRGAP3O43295 1099 aa19.92■□□□□ 0.78
COL4A3BP-203ENST00000380494 SPDYE4A6NLX3 237 aa19.92■□□□□ 0.78
COL4A3BP-203ENST00000380494 GLRX3O76003 335 aaKnown RBP19.92■□□□□ 0.78
COL4A3BP-203ENST00000380494 HMGB1P09429 215 aaKnown RBP19.92■□□□□ 0.78
COL4A3BP-203ENST00000380494 NFE2L2Q16236 605 aa19.92■□□□□ 0.78
COL4A3BP-203ENST00000380494 TMPOP42166 694 aaKnown RBP19.92■□□□□ 0.78
COL4A3BP-203ENST00000380494 KIF1BPQ96EK5 621 aa19.91■□□□□ 0.78
COL4A3BP-203ENST00000380494 NOLC1Q14978 699 aaKnown RBP eCLIP19.91■□□□□ 0.78
COL4A3BP-203ENST00000380494 ZKSCAN5Q9Y2L8 839 aa19.91■□□□□ 0.78
COL4A3BP-203ENST00000380494 GNL3LQ9NVN8 582 aaKnown RBP19.9■□□□□ 0.78
COL4A3BP-203ENST00000380494 PRXQ9BXM0 1461 aa19.9■□□□□ 0.78
COL4A3BP-203ENST00000380494 KIF6Q6ZMV9 814 aa19.9■□□□□ 0.78
COL4A3BP-203ENST00000380494 BMP2KQ9NSY1 1161 aaPredicted RBP19.9■□□□□ 0.78
COL4A3BP-203ENST00000380494 ZNF692Q9BU19 519 aaPredicted RBP19.9■□□□□ 0.78
COL4A3BP-203ENST00000380494 ATAD2Q6PL18 1390 aa19.89■□□□□ 0.78
COL4A3BP-203ENST00000380494 PHAXQ9H814 394 aaKnown RBP19.89■□□□□ 0.77
COL4A3BP-203ENST00000380494 ANKRD62A6NC57 917 aa19.89■□□□□ 0.77
COL4A3BP-203ENST00000380494 CCDC91Q7Z6B0 441 aa19.89■□□□□ 0.77
COL4A3BP-203ENST00000380494 LMAN1P49257 510 aa19.89■□□□□ 0.77
COL4A3BP-203ENST00000380494 CTR9Q6PD62 1173 aa19.89■□□□□ 0.77
COL4A3BP-203ENST00000380494 SLC12A5Q9H2X9 1139 aa19.89■□□□□ 0.77
COL4A3BP-203ENST00000380494 SMAP1Q8IYB5 467 aaPredicted RBP19.88■□□□□ 0.77
COL4A3BP-203ENST00000380494 NAIPQ13075 1403 aa19.88■□□□□ 0.77
COL4A3BP-203ENST00000380494 GCOM1H8Y6P7 765 aaPredicted RBP19.88■□□□□ 0.77
COL4A3BP-203ENST00000380494 USO1O60763 962 aaKnown RBP19.88■□□□□ 0.77
COL4A3BP-203ENST00000380494 MYZAPP0CAP1 466 aa19.88■□□□□ 0.77
COL4A3BP-203ENST00000380494 FKBP15Q5T1M5 1219 aa19.88■□□□□ 0.77
COL4A3BP-203ENST00000380494 RNF187Q5TA31 235 aaPredicted RBP19.88■□□□□ 0.77
COL4A3BP-203ENST00000380494 TRMT1Q9NXH9 659 aaKnown RBP19.88■□□□□ 0.77
COL4A3BP-203ENST00000380494 SYNJ1O43426 1573 aa19.88■□□□□ 0.77
COL4A3BP-203ENST00000380494 GTF2A1P52655 376 aaPredicted RBP19.88■□□□□ 0.77
COL4A3BP-203ENST00000380494 GPATCH11Q8N954 259 aa19.88■□□□□ 0.77
COL4A3BP-203ENST00000380494 SNX21Q969T3 373 aa19.88■□□□□ 0.77
COL4A3BP-203ENST00000380494 YEATS4O95619 227 aa19.87■□□□□ 0.77
COL4A3BP-203ENST00000380494 PAFAH1B1P43034 410 aa19.87■□□□□ 0.77
COL4A3BP-203ENST00000380494 PRPF40BQ6NWY9 871 aaKnown RBP19.87■□□□□ 0.77
COL4A3BP-203ENST00000380494 NSD3Q9BZ95 1437 aa19.87■□□□□ 0.77
COL4A3BP-203ENST00000380494 STX6O43752 255 aa19.87■□□□□ 0.77
COL4A3BP-203ENST00000380494 SULT6B1Q6IMI4 303 aa19.87■□□□□ 0.77
COL4A3BP-203ENST00000380494 FERMT3Q86UX7 667 aa19.87■□□□□ 0.77
COL4A3BP-203ENST00000380494 U3KPZ7 1027 aaPredicted RBP19.87■□□□□ 0.77
COL4A3BP-203ENST00000380494 SOGA3Q5TF21 947 aa19.87■□□□□ 0.77
COL4A3BP-203ENST00000380494 GIGYF2Q6Y7W6 1299 aaKnown RBP19.87■□□□□ 0.77
COL4A3BP-203ENST00000380494 LUZP1Q86V48 1076 aa19.87■□□□□ 0.77
COL4A3BP-203ENST00000380494 RAD54L2Q9Y4B4 1467 aa19.87■□□□□ 0.77
COL4A3BP-203ENST00000380494 NAA15Q9BXJ9 866 aaKnown RBP19.87■□□□□ 0.77
COL4A3BP-203ENST00000380494 SMC1AQ14683 1233 aaKnown RBP19.86■□□□□ 0.77
COL4A3BP-203ENST00000380494 DUSP27Q5VZP5 1158 aa19.86■□□□□ 0.77
COL4A3BP-203ENST00000380494 NLRP6P59044 892 aa19.86■□□□□ 0.77
COL4A3BP-203ENST00000380494 TBC1D9Q6ZT07 1266 aa19.86■□□□□ 0.77
COL4A3BP-203ENST00000380494 TMC6Q7Z403 805 aa19.86■□□□□ 0.77
COL4A3BP-203ENST00000380494 SRRTQ9BXP5 876 aaKnown RBP19.86■□□□□ 0.77
COL4A3BP-203ENST00000380494 SLTMQ9NWH9 1034 aaKnown RBP eCLIP19.86■□□□□ 0.77
COL4A3BP-203ENST00000380494 RBM25P49756 843 aaKnown RBP19.85■□□□□ 0.77
COL4A3BP-203ENST00000380494 DNAAF4Q8WXU2 420 aa19.85■□□□□ 0.77
COL4A3BP-203ENST00000380494 IL1RAPL2Q9NP60 686 aa19.85■□□□□ 0.77
COL4A3BP-203ENST00000380494 CNNM1Q9NRU3 951 aa19.85■□□□□ 0.77
COL4A3BP-203ENST00000380494 SIL1Q9H173 461 aa19.85■□□□□ 0.77
COL4A3BP-203ENST00000380494 NUP133Q8WUM0 1156 aa19.85■□□□□ 0.77
COL4A3BP-203ENST00000380494 FBXO3Q9UK99 471 aa19.85■□□□□ 0.77
COL4A3BP-203ENST00000380494 CKAP2LQ8IYA6 745 aa19.84■□□□□ 0.77
COL4A3BP-203ENST00000380494 SSH1Q8WYL5 1049 aa19.84■□□□□ 0.77
COL4A3BP-203ENST00000380494 TRERF1Q96PN7 1200 aa19.84■□□□□ 0.77
COL4A3BP-203ENST00000380494 RPGRIP1LQ68CZ1 1315 aa19.84■□□□□ 0.77
COL4A3BP-203ENST00000380494 NUTM1Q86Y26 1132 aa19.84■□□□□ 0.77
COL4A3BP-203ENST00000380494 RBM27Q9P2N5 1060 aaKnown RBP19.84■□□□□ 0.77
COL4A3BP-203ENST00000380494 EHBP1Q8NDI1 1231 aa19.84■□□□□ 0.77
COL4A3BP-203ENST00000380494 ALS2CR12Q96Q35 445 aa19.84■□□□□ 0.77
COL4A3BP-203ENST00000380494 UBAC1Q9BSL1 405 aa19.84■□□□□ 0.77
COL4A3BP-203ENST00000380494 MAP3K1Q13233 1512 aa19.84■□□□□ 0.77
COL4A3BP-203ENST00000380494 IFFO1Q0D2I5 559 aa19.83■□□□□ 0.77
COL4A3BP-203ENST00000380494 CCDC141Q6ZP82 1450 aa19.83■□□□□ 0.77
COL4A3BP-203ENST00000380494 ZNF165P49910 485 aa19.83■□□□□ 0.77
COL4A3BP-203ENST00000380494 RAI14Q9P0K7 980 aa19.83■□□□□ 0.77
COL4A3BP-203ENST00000380494 FGFR1OPO95684 399 aaKnown RBP19.83■□□□□ 0.76
COL4A3BP-203ENST00000380494 FEZ1Q99689 392 aa19.83■□□□□ 0.76
COL4A3BP-203ENST00000380494 SKAP1Q86WV1 359 aa19.83■□□□□ 0.76
COL4A3BP-203ENST00000380494 GJB2P29033 226 aa19.82■□□□□ 0.76
COL4A3BP-203ENST00000380494 TUBB4BP68371 445 aa19.82■□□□□ 0.76
COL4A3BP-203ENST00000380494 MTMR7Q9Y216 660 aa19.82■□□□□ 0.76
COL4A3BP-203ENST00000380494 PRAM1Q96QH2 718 aa19.82■□□□□ 0.76
COL4A3BP-203ENST00000380494 SYNJ2O15056 1496 aa19.82■□□□□ 0.76
COL4A3BP-203ENST00000380494 C8orf76Q96K31 380 aa19.82■□□□□ 0.76
COL4A3BP-203ENST00000380494 HDAC1Q13547 482 aaPredicted RBP19.82■□□□□ 0.76
COL4A3BP-203ENST00000380494 TICAM2Q86XR7 235 aa19.82■□□□□ 0.76
COL4A3BP-203ENST00000380494 FSIP1Q8NA03 581 aa19.82■□□□□ 0.76
COL4A3BP-203ENST00000380494 NUP88Q99567 741 aaPredicted RBP19.82■□□□□ 0.76
COL4A3BP-203ENST00000380494 CDK19Q9BWU1 502 aa19.82■□□□□ 0.76
COL4A3BP-203ENST00000380494 CCDC175P0C221 793 aa19.81■□□□□ 0.76
COL4A3BP-203ENST00000380494 TRHP20396 242 aaPredicted RBP19.81■□□□□ 0.76
COL4A3BP-203ENST00000380494 TOP2BQ02880 1626 aa19.81■□□□□ 0.76
COL4A3BP-203ENST00000380494 SPECC1LQ69YQ0 1117 aa19.81■□□□□ 0.76
COL4A3BP-203ENST00000380494 OGFRQ9NZT2 677 aa19.81■□□□□ 0.76
COL4A3BP-203ENST00000380494 EXOC6BQ9Y2D4 811 aa19.81■□□□□ 0.76
COL4A3BP-203ENST00000380494 TSG101Q99816 390 aa19.81■□□□□ 0.76
COL4A3BP-203ENST00000380494 NLRP2Q9NX02 1062 aa19.81■□□□□ 0.76
COL4A3BP-203ENST00000380494 NF2P35240 595 aa19.8■□□□□ 0.76
COL4A3BP-203ENST00000380494 MNAT1P51948 309 aa19.8■□□□□ 0.76
COL4A3BP-203ENST00000380494 VPS36Q86VN1 386 aa19.8■□□□□ 0.76
COL4A3BP-203ENST00000380494 CKAP4Q07065 602 aaKnown RBP19.8■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms