RNA–Protein interactions for RNA: ENST00000380358.8

CHD3-203, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2 BASIC

Gene CHD3, Length 7,356 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-203ENST00000380358 USP47Q96K76 1375 aa14.5□□□□□ -0.09
CHD3-203ENST00000380358 F8W031 263 aaPredicted RBP14.5□□□□□ -0.09
CHD3-203ENST00000380358 ZWINTO95229 277 aa14.5□□□□□ -0.09
CHD3-203ENST00000380358 FERMT3Q86UX7 667 aa14.5□□□□□ -0.09
CHD3-203ENST00000380358 LUZP1Q86V48 1076 aa14.5□□□□□ -0.09
CHD3-203ENST00000380358 CUL5Q93034 780 aa14.5□□□□□ -0.09
CHD3-203ENST00000380358 PPM1EQ8WY54 764 aa14.5□□□□□ -0.09
CHD3-203ENST00000380358 FHOD3Q2V2M9 1422 aa14.5□□□□□ -0.09
CHD3-203ENST00000380358 GJC1P36383 396 aa14.49□□□□□ -0.09
CHD3-203ENST00000380358 PLS1Q14651 629 aa14.49□□□□□ -0.09
CHD3-203ENST00000380358 PDRG1Q9NUG6 133 aa14.49□□□□□ -0.09
CHD3-203ENST00000380358 GAS2L2Q8NHY3 880 aa14.49□□□□□ -0.09
CHD3-203ENST00000380358 UPF3BQ9BZI7 483 aaKnown RBP14.49□□□□□ -0.09
CHD3-203ENST00000380358 SPG7Q9UQ90 795 aa14.49□□□□□ -0.09
CHD3-203ENST00000380358 PDCP20941 246 aa14.49□□□□□ -0.09
CHD3-203ENST00000380358 SPA17Q15506 151 aa14.49□□□□□ -0.09
CHD3-203ENST00000380358 FMN1Q68DA7 1419 aa14.49□□□□□ -0.09
CHD3-203ENST00000380358 EP400NLQ6ZTU2 488 aa14.49□□□□□ -0.09
CHD3-203ENST00000380358 SYCP3Q8IZU3 236 aa14.49□□□□□ -0.09
CHD3-203ENST00000380358 SRGAP3O43295 1099 aa14.49□□□□□ -0.09
CHD3-203ENST00000380358 ZNF444Q8N0Y2 327 aaPredicted RBP14.49□□□□□ -0.09
CHD3-203ENST00000380358 BRPF3Q9ULD4 1205 aa14.49□□□□□ -0.09
CHD3-203ENST00000380358 RBM26Q5T8P6 1007 aaKnown RBP14.48□□□□□ -0.09
CHD3-203ENST00000380358 LRSAM1Q6UWE0 723 aa14.48□□□□□ -0.09
CHD3-203ENST00000380358 CEP126Q9P2H0 1117 aa14.48□□□□□ -0.09
CHD3-203ENST00000380358 PANK2Q9BZ23 570 aa14.48□□□□□ -0.09
CHD3-203ENST00000380358 USHBP1Q8N6Y0 703 aa14.48□□□□□ -0.09
CHD3-203ENST00000380358 CCDC148Q8NFR7 591 aa14.48□□□□□ -0.09
CHD3-203ENST00000380358 FERP16591 822 aa14.48□□□□□ -0.09
CHD3-203ENST00000380358 ZSCAN25Q6NSZ9 544 aa14.48□□□□□ -0.09
CHD3-203ENST00000380358 PDZRN3Q9UPQ7 1066 aa14.48□□□□□ -0.09
CHD3-203ENST00000380358 ERLIN1O75477 346 aa14.48□□□□□ -0.09
CHD3-203ENST00000380358 GPTP24298 496 aa14.48□□□□□ -0.09
CHD3-203ENST00000380358 BLOC1S2Q6QNY1 142 aa14.47□□□□□ -0.09
CHD3-203ENST00000380358 AEBP1Q8IUX7 1158 aa14.47□□□□□ -0.09
CHD3-203ENST00000380358 SIRT1Q96EB6 747 aa14.47□□□□□ -0.09
CHD3-203ENST00000380358 RFX1P22670 979 aa14.47□□□□□ -0.09
CHD3-203ENST00000380358 CAVIN4Q5BKX8 364 aa14.47□□□□□ -0.09
CHD3-203ENST00000380358 PRAM1Q96QH2 718 aa14.47□□□□□ -0.09
CHD3-203ENST00000380358 CASTP20810 708 aaKnown RBP14.47□□□□□ -0.09
CHD3-203ENST00000380358 IPO4Q8TEX9 1081 aaKnown RBP14.47□□□□□ -0.09
CHD3-203ENST00000380358 TSG101Q99816 390 aa14.47□□□□□ -0.09
CHD3-203ENST00000380358 FAM107BQ9H098 131 aa14.47□□□□□ -0.09
CHD3-203ENST00000380358 CECR2Q9BXF3 1484 aa14.47□□□□□ -0.09
CHD3-203ENST00000380358 POLR3GO15318 223 aaPredicted RBP14.47□□□□□ -0.09
CHD3-203ENST00000380358 PRKCSHP14314 528 aaPredicted RBP14.47□□□□□ -0.09
CHD3-203ENST00000380358 PSMC4P43686 418 aa14.47□□□□□ -0.09
CHD3-203ENST00000380358 SPECC1Q5M775 1068 aa14.47□□□□□ -0.09
CHD3-203ENST00000380358 CDCA7LQ96GN5 454 aa14.47□□□□□ -0.09
CHD3-203ENST00000380358 SYNCQ9H7C4 482 aa14.47□□□□□ -0.09
CHD3-203ENST00000380358 NLRP5P59047 1200 aa14.47□□□□□ -0.09
CHD3-203ENST00000380358 PPP1R14CQ8TAE6 165 aa14.47□□□□□ -0.09
CHD3-203ENST00000380358 NOP2P46087 812 aaKnown RBP14.46□□□□□ -0.09
CHD3-203ENST00000380358 HLTFQ14527 1009 aaKnown RBP eCLIP14.46□□□□□ -0.09
CHD3-203ENST00000380358 UQCRHLA0A096LP55 91 aa14.46□□□□□ -0.09
CHD3-203ENST00000380358 UQCRHP07919 91 aa14.46□□□□□ -0.09
CHD3-203ENST00000380358 CIZ1Q9ULV3 898 aaPredicted RBP14.46□□□□□ -0.09
CHD3-203ENST00000380358 CBFA2T2O43439 604 aa14.46□□□□□ -0.09
CHD3-203ENST00000380358 PRDM2Q13029 1718 aa14.46□□□□□ -0.09
CHD3-203ENST00000380358 DHX57Q6P158 1386 aaKnown RBP14.46□□□□□ -0.09
CHD3-203ENST00000380358 TXLNBQ8N3L3 684 aa14.46□□□□□ -0.09
CHD3-203ENST00000380358 TIGD1Q96MW7 591 aa14.46□□□□□ -0.09
CHD3-203ENST00000380358 KRT85P78386 507 aa14.46□□□□□ -0.1
CHD3-203ENST00000380358 KIF7Q2M1P5 1343 aa14.45□□□□□ -0.1
CHD3-203ENST00000380358 ZNF526Q8TF50 670 aaPredicted RBP14.45□□□□□ -0.1
CHD3-203ENST00000380358 CRACR2AQ9BSW2 395 aa14.45□□□□□ -0.1
CHD3-203ENST00000380358 BMS1Q14692 1282 aaKnown RBP14.45□□□□□ -0.1
CHD3-203ENST00000380358 RAB3IL1Q8TBN0 382 aa14.45□□□□□ -0.1
CHD3-203ENST00000380358 IQCEQ6IPM2 695 aa14.45□□□□□ -0.1
CHD3-203ENST00000380358 NUP88Q99567 741 aaPredicted RBP14.45□□□□□ -0.1
CHD3-203ENST00000380358 BOLA2Q9H3K6 86 aa14.45□□□□□ -0.1
CHD3-203ENST00000380358 CASQ1P31415 396 aa14.45□□□□□ -0.1
CHD3-203ENST00000380358 IMMTQ16891 758 aaKnown RBP14.44□□□□□ -0.1
CHD3-203ENST00000380358 TRMT1Q9NXH9 659 aaKnown RBP14.44□□□□□ -0.1
CHD3-203ENST00000380358 TSNARE1Q96NA8 513 aa14.44□□□□□ -0.1
CHD3-203ENST00000380358 ADAMTS8Q9UP79 889 aa14.44□□□□□ -0.1
CHD3-203ENST00000380358 MYO1BO43795 1136 aa14.44□□□□□ -0.1
CHD3-203ENST00000380358 SMARCA5O60264 1052 aaPredicted RBP14.44□□□□□ -0.1
CHD3-203ENST00000380358 TMEM110-MUSTN1A8MSY1 372 aa14.44□□□□□ -0.1
CHD3-203ENST00000380358 GPATCH11Q8N954 259 aa14.44□□□□□ -0.1
CHD3-203ENST00000380358 NGLY1Q96IV0 654 aa14.44□□□□□ -0.1
CHD3-203ENST00000380358 MYD88Q99836 296 aa14.44□□□□□ -0.1
CHD3-203ENST00000380358 MRE11P49959 708 aa14.44□□□□□ -0.1
CHD3-203ENST00000380358 CCT2P78371 535 aaKnown RBP14.44□□□□□ -0.1
CHD3-203ENST00000380358 FKBP15Q5T1M5 1219 aa14.44□□□□□ -0.1
CHD3-203ENST00000380358 CCDC83Q8IWF9 413 aa14.44□□□□□ -0.1
CHD3-203ENST00000380358 JARID2Q92833 1246 aaPredicted RBP14.44□□□□□ -0.1
CHD3-203ENST00000380358 CDKL5O76039 1030 aa14.43□□□□□ -0.1
CHD3-203ENST00000380358 CCDC160A6NGH7 325 aa14.43□□□□□ -0.1
CHD3-203ENST00000380358 TAF12Q16514 161 aa14.43□□□□□ -0.1
CHD3-203ENST00000380358 TCP11L2Q8N4U5 519 aa14.43□□□□□ -0.1
CHD3-203ENST00000380358 CFAP58Q5T655 872 aa14.43□□□□□ -0.1
CHD3-203ENST00000380358 SRCIN1Q9C0H9 1055 aa14.43□□□□□ -0.1
CHD3-203ENST00000380358 PRKRIP1Q9H875 184 aaPredicted RBP14.43□□□□□ -0.1
CHD3-203ENST00000380358 IDEP14735 1019 aa14.42□□□□□ -0.1
CHD3-203ENST00000380358 NDC80O14777 642 aa14.42□□□□□ -0.1
CHD3-203ENST00000380358 SP4Q02446 784 aa14.42□□□□□ -0.1
CHD3-203ENST00000380358 NAPBQ9H115 298 aa14.42□□□□□ -0.1
CHD3-203ENST00000380358 NUP62CLQ9H1M0 184 aa14.42□□□□□ -0.1
CHD3-203ENST00000380358 RB1CC1Q8TDY2 1594 aa14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms