RNA–Protein interactions for RNA: ENST00000372195.5

RAPGEF1-203, Transcript of Rap guanine nucleotide exchange factor 1, humanhuman

TSL 1 (best) BASIC

Gene RAPGEF1, Length 6,256 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF1-203ENST00000372195 SMTNL1A8MU46 457 aa28.04■■■□□ 2.08
RAPGEF1-203ENST00000372195 PPFIA3O75145 1194 aa28.04■■■□□ 2.08
RAPGEF1-203ENST00000372195 MATR3P43243 847 aaKnown RBP eCLIP28.04■■■□□ 2.08
RAPGEF1-203ENST00000372195 MPHOSPH10O00566 681 aaKnown RBP28.04■■■□□ 2.08
RAPGEF1-203ENST00000372195 HECW1Q76N89 1606 aa28.04■■■□□ 2.08
RAPGEF1-203ENST00000372195 METTL24Q5JXM2 366 aa28.04■■■□□ 2.08
RAPGEF1-203ENST00000372195 MINDY4BA8MYZ0 360 aa28.04■■■□□ 2.08
RAPGEF1-203ENST00000372195 CKAP2LQ8IYA6 745 aa28.04■■■□□ 2.08
RAPGEF1-203ENST00000372195 PTCD1O75127 700 aaKnown RBP28.03■■■□□ 2.08
RAPGEF1-203ENST00000372195 KRT32Q14532 448 aa28.03■■■□□ 2.08
RAPGEF1-203ENST00000372195 ZNF76P36508 570 aa28.02■■■□□ 2.08
RAPGEF1-203ENST00000372195 RRP9O43818 475 aaKnown RBP28.02■■■□□ 2.08
RAPGEF1-203ENST00000372195 TSHZ3Q63HK5 1081 aa28.02■■■□□ 2.08
RAPGEF1-203ENST00000372195 NESP48681 1621 aa28.02■■■□□ 2.08
RAPGEF1-203ENST00000372195 TBC1D2Q9BYX2 928 aa28.02■■■□□ 2.08
RAPGEF1-203ENST00000372195 TNPO1Q92973 898 aaKnown RBP28.02■■■□□ 2.08
RAPGEF1-203ENST00000372195 ZSCAN30Q86W11 494 aa28.01■■■□□ 2.07
RAPGEF1-203ENST00000372195 EIF3JO75822 258 aaKnown RBP28.01■■■□□ 2.07
RAPGEF1-203ENST00000372195 IBSPP21815 317 aaPredicted RBP28.01■■■□□ 2.07
RAPGEF1-203ENST00000372195 KIF1BPQ96EK5 621 aa28.01■■■□□ 2.07
RAPGEF1-203ENST00000372195 LUC7LQ9NQ29 371 aaKnown RBP28.01■■■□□ 2.07
RAPGEF1-203ENST00000372195 NME9Q86XW9 330 aa28■■■□□ 2.07
RAPGEF1-203ENST00000372195 TRMT1Q9NXH9 659 aaKnown RBP28■■■□□ 2.07
RAPGEF1-203ENST00000372195 RBM27Q9P2N5 1060 aaKnown RBP28■■■□□ 2.07
RAPGEF1-203ENST00000372195 SSR1P43307 286 aaKnown RBP28■■■□□ 2.07
RAPGEF1-203ENST00000372195 CCT2P78371 535 aaKnown RBP28■■■□□ 2.07
RAPGEF1-203ENST00000372195 ARHGAP29Q52LW3 1261 aa27.99■■■□□ 2.07
RAPGEF1-203ENST00000372195 DNA2P51530 1060 aa27.99■■■□□ 2.07
RAPGEF1-203ENST00000372195 PRDM11Q9NQV5 511 aa27.99■■■□□ 2.07
RAPGEF1-203ENST00000372195 NKTRP30414 1462 aaKnown RBP27.98■■■□□ 2.07
RAPGEF1-203ENST00000372195 CCDC183Q5T5S1 534 aa27.98■■■□□ 2.07
RAPGEF1-203ENST00000372195 THEMISQ8N1K5 641 aaPredicted RBP27.98■■■□□ 2.07
RAPGEF1-203ENST00000372195 EMILIN1Q9Y6C2 1016 aa27.98■■■□□ 2.07
RAPGEF1-203ENST00000372195 TAF7Q15545 349 aaPredicted RBP27.97■■■□□ 2.07
RAPGEF1-203ENST00000372195 USP25Q9UHP3 1055 aa27.97■■■□□ 2.07
RAPGEF1-203ENST00000372195 IGHMBP2P38935 993 aaKnown RBP27.97■■■□□ 2.07
RAPGEF1-203ENST00000372195 ATAD2Q6PL18 1390 aa27.97■■■□□ 2.07
RAPGEF1-203ENST00000372195 CPLX3Q8WVH0 158 aa27.96■■■□□ 2.07
RAPGEF1-203ENST00000372195 CASQ1P31415 396 aa27.96■■■□□ 2.07
RAPGEF1-203ENST00000372195 CLIP2Q9UDT6 1046 aa27.96■■■□□ 2.07
RAPGEF1-203ENST00000372195 PTPN14Q15678 1187 aa27.96■■■□□ 2.07
RAPGEF1-203ENST00000372195 UBXN4Q92575 508 aa27.96■■■□□ 2.07
RAPGEF1-203ENST00000372195 CCDC144CPQ8IYA2 1237 aa27.95■■■□□ 2.07
RAPGEF1-203ENST00000372195 BMP2KQ9NSY1 1161 aaPredicted RBP27.95■■■□□ 2.07
RAPGEF1-203ENST00000372195 RAB11FIP4Q86YS3 637 aa27.95■■■□□ 2.06
RAPGEF1-203ENST00000372195 IFIT1P09914 478 aaKnown RBP27.95■■■□□ 2.06
RAPGEF1-203ENST00000372195 MPRIPQ6WCQ1 1025 aa27.95■■■□□ 2.06
RAPGEF1-203ENST00000372195 AEBP2Q6ZN18 517 aaPredicted RBP27.95■■■□□ 2.06
RAPGEF1-203ENST00000372195 EFCAB5A4FU69 1503 aa27.95■■■□□ 2.06
RAPGEF1-203ENST00000372195 ISM2Q6H9L7 571 aa27.95■■■□□ 2.06
RAPGEF1-203ENST00000372195 WASF1Q92558 559 aa27.95■■■□□ 2.06
RAPGEF1-203ENST00000372195 TROQ12816 1431 aaPredicted RBP27.94■■■□□ 2.06
RAPGEF1-203ENST00000372195 PIP4K2BP78356 416 aa27.94■■■□□ 2.06
RAPGEF1-203ENST00000372195 GLRX3O76003 335 aaKnown RBP27.94■■■□□ 2.06
RAPGEF1-203ENST00000372195 TRERF1Q96PN7 1200 aa27.93■■■□□ 2.06
RAPGEF1-203ENST00000372195 RAB11FIP3O75154 756 aa27.93■■■□□ 2.06
RAPGEF1-203ENST00000372195 TFIP11Q9UBB9 837 aaKnown RBP27.93■■■□□ 2.06
RAPGEF1-203ENST00000372195 IGHDP01880 384 aa27.93■■■□□ 2.06
RAPGEF1-203ENST00000372195 URI1O94763 535 aaPredicted RBP27.92■■■□□ 2.06
RAPGEF1-203ENST00000372195 BIN1O00499 593 aa27.92■■■□□ 2.06
RAPGEF1-203ENST00000372195 SLC4A8Q2Y0W8 1093 aa27.92■■■□□ 2.06
RAPGEF1-203ENST00000372195 CCDC148Q8NFR7 591 aa27.92■■■□□ 2.06
RAPGEF1-203ENST00000372195 CEP131Q9UPN4 1083 aa27.92■■■□□ 2.06
RAPGEF1-203ENST00000372195 U3KPZ7 1027 aaPredicted RBP27.92■■■□□ 2.06
RAPGEF1-203ENST00000372195 TRIM27P14373 513 aa27.91■■■□□ 2.06
RAPGEF1-203ENST00000372195 TAF4BQ92750 862 aa27.91■■■□□ 2.06
RAPGEF1-203ENST00000372195 SLC52A1Q9NWF4 448 aa27.91■■■□□ 2.06
RAPGEF1-203ENST00000372195 SFPQP23246 707 aaKnown RBP eCLIP27.91■■■□□ 2.06
RAPGEF1-203ENST00000372195 C8orf76Q96K31 380 aa27.91■■■□□ 2.06
RAPGEF1-203ENST00000372195 GJB2P29033 226 aa27.9■■■□□ 2.06
RAPGEF1-203ENST00000372195 JARID2Q92833 1246 aaPredicted RBP27.9■■■□□ 2.06
RAPGEF1-203ENST00000372195 IQCEQ6IPM2 695 aa27.9■■■□□ 2.06
RAPGEF1-203ENST00000372195 C16orf45Q96MC5 204 aaPredicted RBP27.9■■■□□ 2.06
RAPGEF1-203ENST00000372195 TXLNBQ8N3L3 684 aa27.89■■■□□ 2.06
RAPGEF1-203ENST00000372195 UBA5Q9GZZ9 404 aa27.89■■■□□ 2.06
RAPGEF1-203ENST00000372195 TMCO3Q6UWJ1 677 aa27.89■■■□□ 2.06
RAPGEF1-203ENST00000372195 TBC1D9Q6ZT07 1266 aa27.89■■■□□ 2.06
RAPGEF1-203ENST00000372195 NAIPQ13075 1403 aa27.89■■■□□ 2.05
RAPGEF1-203ENST00000372195 POLR3GO15318 223 aaPredicted RBP27.89■■■□□ 2.05
RAPGEF1-203ENST00000372195 ZNF397Q8NF99 534 aaPredicted RBP27.89■■■□□ 2.05
RAPGEF1-203ENST00000372195 ANO10Q9NW15 660 aa27.89■■■□□ 2.05
RAPGEF1-203ENST00000372195 POLR3DP05423 398 aaPredicted RBP27.88■■■□□ 2.05
RAPGEF1-203ENST00000372195 CCDC113Q9H0I3 377 aa27.88■■■□□ 2.05
RAPGEF1-203ENST00000372195 ALDH1L2Q3SY69 923 aa27.88■■■□□ 2.05
RAPGEF1-203ENST00000372195 SNAPC4Q5SXM2 1469 aa27.88■■■□□ 2.05
RAPGEF1-203ENST00000372195 RANBP6O60518 1105 aaKnown RBP27.88■■■□□ 2.05
RAPGEF1-203ENST00000372195 TOP1P11387 765 aaKnown RBP27.87■■■□□ 2.05
RAPGEF1-203ENST00000372195 ARHGEF11O15085 1522 aa27.87■■■□□ 2.05
RAPGEF1-203ENST00000372195 PLEKHH2Q8IVE3 1493 aa27.87■■■□□ 2.05
RAPGEF1-203ENST00000372195 FAM83GA6ND36 823 aa27.87■■■□□ 2.05
RAPGEF1-203ENST00000372195 NAPBQ9H115 298 aa27.87■■■□□ 2.05
RAPGEF1-203ENST00000372195 PANK2Q9BZ23 570 aa27.86■■■□□ 2.05
RAPGEF1-203ENST00000372195 MKNK2Q9HBH9 465 aa27.86■■■□□ 2.05
RAPGEF1-203ENST00000372195 SEC63Q9UGP8 760 aaKnown RBP27.85■■■□□ 2.05
RAPGEF1-203ENST00000372195 TNNT1P13805 278 aa27.85■■■□□ 2.05
RAPGEF1-203ENST00000372195 CCDC61Q9Y6R9 512 aa27.84■■■□□ 2.05
RAPGEF1-203ENST00000372195 SPDYE4A6NLX3 237 aa27.84■■■□□ 2.05
RAPGEF1-203ENST00000372195 PRKCSHP14314 528 aaPredicted RBP27.84■■■□□ 2.05
RAPGEF1-203ENST00000372195 SPA17Q15506 151 aa27.84■■■□□ 2.05
RAPGEF1-203ENST00000372195 GOLGA8BA8MQT2 603 aa27.84■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 81.4 ms