RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 NEFMP07197 916 aa22.58■■□□□ 1.2
CLN3-203ENST00000357806 PHACTR3Q96KR7 559 aa22.58■■□□□ 1.2
CLN3-203ENST00000357806 GNAT3A8MTJ3 354 aa22.57■■□□□ 1.2
CLN3-203ENST00000357806 RNMTO43148 476 aaKnown RBP22.57■■□□□ 1.2
CLN3-203ENST00000357806 SLC15A2Q16348 729 aa22.57■■□□□ 1.2
CLN3-203ENST00000357806 ASAP1Q9ULH1 1129 aa22.57■■□□□ 1.2
CLN3-203ENST00000357806 UBR3Q6ZT12 1888 aa22.57■■□□□ 1.2
CLN3-203ENST00000357806 HMGB2P26583 209 aaKnown RBP22.56■■□□□ 1.2
CLN3-203ENST00000357806 PNNQ9H307 717 aaKnown RBP22.56■■□□□ 1.2
CLN3-203ENST00000357806 TJP1Q07157 1748 aa22.55■■□□□ 1.2
CLN3-203ENST00000357806 KCNQ4P56696 695 aa22.55■■□□□ 1.2
CLN3-203ENST00000357806 NFATC2IPQ8NCF5 419 aa22.55■■□□□ 1.2
CLN3-203ENST00000357806 LGR6Q9HBX8 967 aa22.55■■□□□ 1.2
CLN3-203ENST00000357806 ATG3Q9NT62 314 aa22.55■■□□□ 1.2
CLN3-203ENST00000357806 SLC52A2Q9HAB3 445 aa22.54■■□□□ 1.2
CLN3-203ENST00000357806 LOC102724428A0A0B4J2F2 783 aa22.53■■□□□ 1.2
CLN3-203ENST00000357806 ANP32CO43423 234 aa22.53■■□□□ 1.2
CLN3-203ENST00000357806 SIK1P57059 783 aa22.53■■□□□ 1.2
CLN3-203ENST00000357806 ZNF827Q17R98 1081 aa22.53■■□□□ 1.2
CLN3-203ENST00000357806 MAPK8IP3Q9UPT6 1336 aa22.52■■□□□ 1.2
CLN3-203ENST00000357806 WDR43Q15061 677 aaKnown RBP eCLIP22.52■■□□□ 1.2
CLN3-203ENST00000357806 PLEKHF1Q96S99 279 aa22.52■■□□□ 1.2
CLN3-203ENST00000357806 AKT1S1Q96B36 256 aa22.51■■□□□ 1.19
CLN3-203ENST00000357806 CEMIPQ8WUJ3 1361 aa22.51■■□□□ 1.19
CLN3-203ENST00000357806 TEFQ10587 303 aa22.49■■□□□ 1.19
CLN3-203ENST00000357806 RTF1Q92541 710 aaKnown RBP22.49■■□□□ 1.19
CLN3-203ENST00000357806 KCPQ6ZWJ8 1503 aa22.48■■□□□ 1.19
CLN3-203ENST00000357806 ATP6V1AP38606 617 aa22.48■■□□□ 1.19
CLN3-203ENST00000357806 IL17REQ8NFR9 667 aa22.48■■□□□ 1.19
CLN3-203ENST00000357806 RBM42Q9BTD8 480 aaKnown RBP22.48■■□□□ 1.19
CLN3-203ENST00000357806 MYH14Q7Z406 1995 aaKnown RBP22.48■■□□□ 1.19
CLN3-203ENST00000357806 COL24A1Q17RW2 1714 aa22.47■■□□□ 1.19
CLN3-203ENST00000357806 HTATSF1O43719 755 aaKnown RBP22.47■■□□□ 1.19
CLN3-203ENST00000357806 TFCP2L1Q9NZI6 479 aa22.47■■□□□ 1.19
CLN3-203ENST00000357806 KDM3BQ7LBC6 1761 aa22.46■■□□□ 1.19
CLN3-203ENST00000357806 ITPK1Q13572 414 aa22.45■■□□□ 1.18
CLN3-203ENST00000357806 NFE2L2Q16236 605 aa22.45■■□□□ 1.18
CLN3-203ENST00000357806 PTCD1O75127 700 aaKnown RBP22.44■■□□□ 1.18
CLN3-203ENST00000357806 LINC00116Q8NCU8 138 aa22.44■■□□□ 1.18
CLN3-203ENST00000357806 AK7Q96M32 723 aa22.44■■□□□ 1.18
CLN3-203ENST00000357806 PDGFDQ9GZP0 370 aaPredicted RBP22.44■■□□□ 1.18
CLN3-203ENST00000357806 SRCAPQ6ZRS2 3230 aa22.44■■□□□ 1.18
CLN3-203ENST00000357806 PNPLA7Q6ZV29 1317 aa22.43■■□□□ 1.18
CLN3-203ENST00000357806 C4AP0C0L4 1744 aa22.43■■□□□ 1.18
CLN3-203ENST00000357806 MCM10Q7L590 875 aa22.43■■□□□ 1.18
CLN3-203ENST00000357806 SLC4A9Q96Q91 983 aa22.43■■□□□ 1.18
CLN3-203ENST00000357806 SLC39A6Q13433 755 aa22.42■■□□□ 1.18
CLN3-203ENST00000357806 TTC5Q8N0Z6 440 aa22.42■■□□□ 1.18
CLN3-203ENST00000357806 ADAMTS8Q9UP79 889 aa22.41■■□□□ 1.18
CLN3-203ENST00000357806 CCDC146Q8IYE0 955 aa22.41■■□□□ 1.18
CLN3-203ENST00000357806 RUNDC1Q96C34 613 aa22.41■■□□□ 1.18
CLN3-203ENST00000357806 SPON1Q9HCB6 807 aa22.41■■□□□ 1.18
CLN3-203ENST00000357806 DCTN1Q14203 1278 aa22.4■■□□□ 1.18
CLN3-203ENST00000357806 LAMB4A4D0S4 1761 aa22.4■■□□□ 1.18
CLN3-203ENST00000357806 ZBTB7AO95365 584 aa22.39■■□□□ 1.17
CLN3-203ENST00000357806 FLAD1Q8NFF5 587 aa22.39■■□□□ 1.17
CLN3-203ENST00000357806 MTFR1LQ9H019 292 aa22.39■■□□□ 1.17
CLN3-203ENST00000357806 CNTNAP4Q9C0A0 1308 aa22.38■■□□□ 1.17
CLN3-203ENST00000357806 BTBD11A6QL63 1104 aa22.38■■□□□ 1.17
CLN3-203ENST00000357806 CCDC184Q52MB2 194 aa22.38■■□□□ 1.17
CLN3-203ENST00000357806 ZNF790Q6PG37 636 aa22.38■■□□□ 1.17
CLN3-203ENST00000357806 GNPATO15228 680 aa22.37■■□□□ 1.17
CLN3-203ENST00000357806 TMPOP42166 694 aaKnown RBP22.37■■□□□ 1.17
CLN3-203ENST00000357806 SLC16A10Q8TF71 515 aa22.37■■□□□ 1.17
CLN3-203ENST00000357806 MRS2Q9HD23 443 aa22.37■■□□□ 1.17
CLN3-203ENST00000357806 SSFA2P28290 1259 aa22.36■■□□□ 1.17
CLN3-203ENST00000357806 RIPK4P57078 832 aa22.36■■□□□ 1.17
CLN3-203ENST00000357806 LMOD3Q0VAK6 560 aa22.36■■□□□ 1.17
CLN3-203ENST00000357806 VSIG10Q8N0Z9 540 aa22.36■■□□□ 1.17
CLN3-203ENST00000357806 MSH5O43196 834 aa22.35■■□□□ 1.17
CLN3-203ENST00000357806 RC3H1Q5TC82 1133 aaKnown RBP22.35■■□□□ 1.17
CLN3-203ENST00000357806 COL23A1Q86Y22 540 aaPredicted RBP22.35■■□□□ 1.17
CLN3-203ENST00000357806 HEG1Q9ULI3 1381 aa22.35■■□□□ 1.17
CLN3-203ENST00000357806 PHF14O94880 888 aa22.34■■□□□ 1.17
CLN3-203ENST00000357806 FMNL2Q96PY5 1086 aa22.34■■□□□ 1.17
CLN3-203ENST00000357806 ATF5Q9Y2D1 282 aaPredicted RBP22.34■■□□□ 1.17
CLN3-203ENST00000357806 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.33■■□□□ 1.16
CLN3-203ENST00000357806 CRKLP46109 303 aaKnown RBP22.33■■□□□ 1.16
CLN3-203ENST00000357806 TAF7Q15545 349 aaPredicted RBP22.33■■□□□ 1.16
CLN3-203ENST00000357806 AMIGO3Q86WK7 504 aa22.33■■□□□ 1.16
CLN3-203ENST00000357806 DNAJC10Q8IXB1 793 aa22.33■■□□□ 1.16
CLN3-203ENST00000357806 ZNF496Q96IT1 587 aaPredicted RBP22.33■■□□□ 1.16
CLN3-203ENST00000357806 RTCBQ9Y3I0 505 aaKnown RBP22.33■■□□□ 1.16
CLN3-203ENST00000357806 RRP7AQ9Y3A4 280 aaKnown RBP22.32■■□□□ 1.16
CLN3-203ENST00000357806 NEUROD2Q15784 382 aa22.31■■□□□ 1.16
CLN3-203ENST00000357806 PNISRQ8TF01 805 aaKnown RBP22.31■■□□□ 1.16
CLN3-203ENST00000357806 THUMPD2Q9BTF0 503 aaKnown RBP22.31■■□□□ 1.16
CLN3-203ENST00000357806 PPP1R1BQ9UD71 204 aaPredicted RBP22.31■■□□□ 1.16
CLN3-203ENST00000357806 PTGER2P43116 358 aa22.3■■□□□ 1.16
CLN3-203ENST00000357806 KCNQ3O43525 872 aa22.29■■□□□ 1.16
CLN3-203ENST00000357806 RPS6KA4O75676 772 aa22.29■■□□□ 1.16
CLN3-203ENST00000357806 CYP19A1P11511 503 aaPredicted RBP22.29■■□□□ 1.16
CLN3-203ENST00000357806 ADRA2BP18089 450 aa22.29■■□□□ 1.16
CLN3-203ENST00000357806 TEX13AQ9BXU3 409 aaPredicted RBP22.28■■□□□ 1.16
CLN3-203ENST00000357806 CCDC87Q9NVE4 849 aa22.28■■□□□ 1.16
CLN3-203ENST00000357806 STARD3NLO95772 234 aa22.28■■□□□ 1.16
CLN3-203ENST00000357806 SMIM5Q71RC9 77 aa22.28■■□□□ 1.16
CLN3-203ENST00000357806 SGIP1Q9BQI5 828 aa22.28■■□□□ 1.16
CLN3-203ENST00000357806 TRAPPC3LQ5T215 181 aa22.27■■□□□ 1.16
CLN3-203ENST00000357806 INTS5Q6P9B9 1019 aaKnown RBP22.27■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms